Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49470

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0042407: cristae formation0.00E+00
3GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
4GO:0006573: valine metabolic process0.00E+00
5GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0009735: response to cytokinin3.54E-05
9GO:0006412: translation4.15E-05
10GO:0006546: glycine catabolic process5.13E-05
11GO:0015976: carbon utilization5.13E-05
12GO:0010190: cytochrome b6f complex assembly1.18E-04
13GO:0042549: photosystem II stabilization1.18E-04
14GO:0061077: chaperone-mediated protein folding1.24E-04
15GO:0042026: protein refolding1.62E-04
16GO:0016117: carotenoid biosynthetic process2.04E-04
17GO:0000413: protein peptidyl-prolyl isomerization2.27E-04
18GO:0006551: leucine metabolic process2.77E-04
19GO:0032544: plastid translation3.32E-04
20GO:0006457: protein folding4.61E-04
21GO:0006779: porphyrin-containing compound biosynthetic process4.74E-04
22GO:0009658: chloroplast organization4.89E-04
23GO:0042254: ribosome biogenesis5.05E-04
24GO:0006782: protoporphyrinogen IX biosynthetic process5.52E-04
25GO:0006695: cholesterol biosynthetic process6.09E-04
26GO:0006423: cysteinyl-tRNA aminoacylation6.09E-04
27GO:2000123: positive regulation of stomatal complex development6.09E-04
28GO:0010275: NAD(P)H dehydrogenase complex assembly6.09E-04
29GO:0043039: tRNA aminoacylation6.09E-04
30GO:0009773: photosynthetic electron transport in photosystem I6.38E-04
31GO:0006415: translational termination6.38E-04
32GO:0018119: peptidyl-cysteine S-nitrosylation6.38E-04
33GO:0015979: photosynthesis9.04E-04
34GO:0010020: chloroplast fission9.28E-04
35GO:0010207: photosystem II assembly9.28E-04
36GO:0006518: peptide metabolic process9.88E-04
37GO:0006696: ergosterol biosynthetic process9.88E-04
38GO:0080147: root hair cell development1.27E-03
39GO:0019344: cysteine biosynthetic process1.27E-03
40GO:0006418: tRNA aminoacylation for protein translation1.40E-03
41GO:0006241: CTP biosynthetic process1.41E-03
42GO:0006165: nucleoside diphosphate phosphorylation1.41E-03
43GO:0006228: UTP biosynthetic process1.41E-03
44GO:0001678: cellular glucose homeostasis1.41E-03
45GO:0043572: plastid fission1.41E-03
46GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.41E-03
47GO:0051085: chaperone mediated protein folding requiring cofactor1.41E-03
48GO:0010239: chloroplast mRNA processing1.41E-03
49GO:2000122: negative regulation of stomatal complex development1.89E-03
50GO:2000038: regulation of stomatal complex development1.89E-03
51GO:0010037: response to carbon dioxide1.89E-03
52GO:0006808: regulation of nitrogen utilization1.89E-03
53GO:0019464: glycine decarboxylation via glycine cleavage system1.89E-03
54GO:0009765: photosynthesis, light harvesting1.89E-03
55GO:0006183: GTP biosynthetic process1.89E-03
56GO:0010375: stomatal complex patterning2.41E-03
57GO:0016120: carotene biosynthetic process2.41E-03
58GO:0010236: plastoquinone biosynthetic process2.41E-03
59GO:0031365: N-terminal protein amino acid modification2.41E-03
60GO:0016123: xanthophyll biosynthetic process2.41E-03
61GO:0009793: embryo development ending in seed dormancy2.70E-03
62GO:0006810: transport2.87E-03
63GO:0010358: leaf shaping2.98E-03
64GO:0016554: cytidine to uridine editing2.98E-03
65GO:0006796: phosphate-containing compound metabolic process2.98E-03
66GO:0006014: D-ribose metabolic process2.98E-03
67GO:0046835: carbohydrate phosphorylation3.58E-03
68GO:0042372: phylloquinone biosynthetic process3.58E-03
69GO:0009612: response to mechanical stimulus3.58E-03
70GO:0009082: branched-chain amino acid biosynthetic process3.58E-03
71GO:0006458: 'de novo' protein folding3.58E-03
72GO:0009099: valine biosynthetic process3.58E-03
73GO:0009854: oxidative photosynthetic carbon pathway3.58E-03
74GO:0010555: response to mannitol3.58E-03
75GO:0042742: defense response to bacterium4.12E-03
76GO:0009645: response to low light intensity stimulus4.23E-03
77GO:0009642: response to light intensity4.90E-03
78GO:0015995: chlorophyll biosynthetic process5.26E-03
79GO:0009657: plastid organization5.62E-03
80GO:0009097: isoleucine biosynthetic process5.62E-03
81GO:0009932: cell tip growth5.62E-03
82GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.62E-03
83GO:0045337: farnesyl diphosphate biosynthetic process6.37E-03
84GO:0010206: photosystem II repair6.37E-03
85GO:0033384: geranyl diphosphate biosynthetic process6.37E-03
86GO:0006783: heme biosynthetic process6.37E-03
87GO:1900865: chloroplast RNA modification7.15E-03
88GO:0043067: regulation of programmed cell death7.15E-03
89GO:0016051: carbohydrate biosynthetic process7.40E-03
90GO:0009409: response to cold7.46E-03
91GO:0009870: defense response signaling pathway, resistance gene-dependent7.97E-03
92GO:0006535: cysteine biosynthetic process from serine7.97E-03
93GO:0019684: photosynthesis, light reaction8.82E-03
94GO:0009089: lysine biosynthetic process via diaminopimelate8.82E-03
95GO:0043085: positive regulation of catalytic activity8.82E-03
96GO:0045037: protein import into chloroplast stroma9.70E-03
97GO:0006790: sulfur compound metabolic process9.70E-03
98GO:0009718: anthocyanin-containing compound biosynthetic process1.06E-02
99GO:0009767: photosynthetic electron transport chain1.06E-02
100GO:0019253: reductive pentose-phosphate cycle1.16E-02
101GO:0046854: phosphatidylinositol phosphorylation1.25E-02
102GO:0006636: unsaturated fatty acid biosynthetic process1.35E-02
103GO:0006508: proteolysis1.40E-02
104GO:0000027: ribosomal large subunit assembly1.46E-02
105GO:0006096: glycolytic process1.53E-02
106GO:0007017: microtubule-based process1.56E-02
107GO:0007005: mitochondrion organization1.78E-02
108GO:0080092: regulation of pollen tube growth1.78E-02
109GO:0045454: cell redox homeostasis1.84E-02
110GO:0009411: response to UV1.89E-02
111GO:0000271: polysaccharide biosynthetic process2.25E-02
112GO:0045489: pectin biosynthetic process2.37E-02
113GO:0008360: regulation of cell shape2.37E-02
114GO:0006662: glycerol ether metabolic process2.37E-02
115GO:0010197: polar nucleus fusion2.37E-02
116GO:0009741: response to brassinosteroid2.37E-02
117GO:0010268: brassinosteroid homeostasis2.37E-02
118GO:0055114: oxidation-reduction process2.46E-02
119GO:0007018: microtubule-based movement2.50E-02
120GO:0019252: starch biosynthetic process2.63E-02
121GO:0016132: brassinosteroid biosynthetic process2.76E-02
122GO:0046686: response to cadmium ion2.81E-02
123GO:0006633: fatty acid biosynthetic process2.90E-02
124GO:0016125: sterol metabolic process3.16E-02
125GO:0071805: potassium ion transmembrane transport3.30E-02
126GO:0007267: cell-cell signaling3.30E-02
127GO:0010027: thylakoid membrane organization3.58E-02
128GO:0016126: sterol biosynthetic process3.58E-02
129GO:0008380: RNA splicing3.79E-02
130GO:0009627: systemic acquired resistance3.87E-02
131GO:0042128: nitrate assimilation3.87E-02
132GO:0010411: xyloglucan metabolic process4.02E-02
133GO:0071555: cell wall organization4.02E-02
134GO:0009817: defense response to fungus, incompatible interaction4.33E-02
135GO:0048481: plant ovule development4.33E-02
136GO:0008219: cell death4.33E-02
137GO:0000160: phosphorelay signal transduction system4.48E-02
138GO:0009407: toxin catabolic process4.64E-02
139GO:0009826: unidimensional cell growth4.72E-02
140GO:0010119: regulation of stomatal movement4.79E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0004822: isoleucine-tRNA ligase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.19E-11
11GO:0019843: rRNA binding1.53E-09
12GO:0003735: structural constituent of ribosome1.50E-06
13GO:0005528: FK506 binding3.08E-06
14GO:0016149: translation release factor activity, codon specific2.85E-05
15GO:0051920: peroxiredoxin activity1.62E-04
16GO:0004033: aldo-keto reductase (NADP) activity2.69E-04
17GO:0016209: antioxidant activity2.69E-04
18GO:0004831: tyrosine-tRNA ligase activity2.77E-04
19GO:0004655: porphobilinogen synthase activity2.77E-04
20GO:0051996: squalene synthase activity2.77E-04
21GO:0003838: sterol 24-C-methyltransferase activity2.77E-04
22GO:0003984: acetolactate synthase activity2.77E-04
23GO:0010012: steroid 22-alpha hydroxylase activity2.77E-04
24GO:0003747: translation release factor activity3.99E-04
25GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.09E-04
26GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.09E-04
27GO:0050017: L-3-cyanoalanine synthase activity6.09E-04
28GO:0042389: omega-3 fatty acid desaturase activity6.09E-04
29GO:0004618: phosphoglycerate kinase activity6.09E-04
30GO:0004047: aminomethyltransferase activity6.09E-04
31GO:0004817: cysteine-tRNA ligase activity6.09E-04
32GO:0044183: protein binding involved in protein folding6.38E-04
33GO:0004089: carbonate dehydratase activity8.26E-04
34GO:0004222: metalloendopeptidase activity8.56E-04
35GO:0017150: tRNA dihydrouridine synthase activity9.88E-04
36GO:0002161: aminoacyl-tRNA editing activity9.88E-04
37GO:0004148: dihydrolipoyl dehydrogenase activity9.88E-04
38GO:0030267: glyoxylate reductase (NADP) activity9.88E-04
39GO:0004550: nucleoside diphosphate kinase activity1.41E-03
40GO:0008097: 5S rRNA binding1.41E-03
41GO:0004375: glycine dehydrogenase (decarboxylating) activity1.41E-03
42GO:0005536: glucose binding1.89E-03
43GO:0004396: hexokinase activity1.89E-03
44GO:0019158: mannokinase activity1.89E-03
45GO:0005319: lipid transporter activity1.89E-03
46GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.89E-03
47GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.89E-03
48GO:0004045: aminoacyl-tRNA hydrolase activity1.89E-03
49GO:0004812: aminoacyl-tRNA ligase activity2.16E-03
50GO:0016773: phosphotransferase activity, alcohol group as acceptor2.41E-03
51GO:0016208: AMP binding2.98E-03
52GO:0016462: pyrophosphatase activity2.98E-03
53GO:0008200: ion channel inhibitor activity2.98E-03
54GO:0080030: methyl indole-3-acetate esterase activity2.98E-03
55GO:0051082: unfolded protein binding3.19E-03
56GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.58E-03
57GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.58E-03
58GO:0004747: ribokinase activity3.58E-03
59GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.58E-03
60GO:0004124: cysteine synthase activity3.58E-03
61GO:0016722: oxidoreductase activity, oxidizing metal ions3.98E-03
62GO:0008237: metallopeptidase activity3.98E-03
63GO:0016831: carboxy-lyase activity4.23E-03
64GO:0008235: metalloexopeptidase activity4.23E-03
65GO:0004427: inorganic diphosphatase activity4.23E-03
66GO:0008865: fructokinase activity4.90E-03
67GO:0008236: serine-type peptidase activity5.55E-03
68GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.62E-03
69GO:0003843: 1,3-beta-D-glucan synthase activity5.62E-03
70GO:0004337: geranyltranstransferase activity6.37E-03
71GO:0030145: manganese ion binding6.75E-03
72GO:0008047: enzyme activator activity7.97E-03
73GO:0005089: Rho guanyl-nucleotide exchange factor activity8.82E-03
74GO:0004177: aminopeptidase activity8.82E-03
75GO:0004161: dimethylallyltranstransferase activity8.82E-03
76GO:0000049: tRNA binding9.70E-03
77GO:0051537: 2 iron, 2 sulfur cluster binding1.03E-02
78GO:0031072: heat shock protein binding1.06E-02
79GO:0005198: structural molecule activity1.07E-02
80GO:0045735: nutrient reservoir activity1.53E-02
81GO:0015079: potassium ion transmembrane transporter activity1.56E-02
82GO:0004176: ATP-dependent peptidase activity1.67E-02
83GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.78E-02
84GO:0003756: protein disulfide isomerase activity2.01E-02
85GO:0047134: protein-disulfide reductase activity2.13E-02
86GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.37E-02
87GO:0004791: thioredoxin-disulfide reductase activity2.50E-02
88GO:0016853: isomerase activity2.50E-02
89GO:0019901: protein kinase binding2.63E-02
90GO:0016762: xyloglucan:xyloglucosyl transferase activity2.76E-02
91GO:0048038: quinone binding2.76E-02
92GO:0000156: phosphorelay response regulator activity3.02E-02
93GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.02E-02
94GO:0008483: transaminase activity3.30E-02
95GO:0005200: structural constituent of cytoskeleton3.30E-02
96GO:0016597: amino acid binding3.44E-02
97GO:0005509: calcium ion binding3.58E-02
98GO:0016798: hydrolase activity, acting on glycosyl bonds4.02E-02
99GO:0042802: identical protein binding4.04E-02
100GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.17E-02
101GO:0004601: peroxidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0009507: chloroplast2.40E-52
3GO:0009570: chloroplast stroma8.13E-37
4GO:0009941: chloroplast envelope1.34E-28
5GO:0009543: chloroplast thylakoid lumen2.41E-20
6GO:0009535: chloroplast thylakoid membrane3.58E-19
7GO:0009579: thylakoid3.13E-14
8GO:0031977: thylakoid lumen3.86E-13
9GO:0009654: photosystem II oxygen evolving complex7.86E-08
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.74E-07
11GO:0009534: chloroplast thylakoid1.82E-07
12GO:0019898: extrinsic component of membrane1.92E-05
13GO:0048046: apoplast3.12E-05
14GO:0000311: plastid large ribosomal subunit3.70E-05
15GO:0030095: chloroplast photosystem II5.55E-05
16GO:0005840: ribosome9.78E-05
17GO:0043190: ATP-binding cassette (ABC) transporter complex2.77E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]2.77E-04
19GO:0010319: stromule4.66E-04
20GO:0009706: chloroplast inner membrane5.34E-04
21GO:0042170: plastid membrane6.09E-04
22GO:0031969: chloroplast membrane7.16E-04
23GO:0031012: extracellular matrix8.26E-04
24GO:0005875: microtubule associated complex1.15E-03
25GO:0005960: glycine cleavage complex1.41E-03
26GO:0022626: cytosolic ribosome3.59E-03
27GO:0009533: chloroplast stromal thylakoid4.23E-03
28GO:0000148: 1,3-beta-D-glucan synthase complex5.62E-03
29GO:0009539: photosystem II reaction center5.62E-03
30GO:0045298: tubulin complex6.37E-03
31GO:0009505: plant-type cell wall6.42E-03
32GO:0015934: large ribosomal subunit6.75E-03
33GO:0016324: apical plasma membrane7.97E-03
34GO:0046658: anchored component of plasma membrane9.14E-03
35GO:0005618: cell wall9.56E-03
36GO:0031307: integral component of mitochondrial outer membrane9.70E-03
37GO:0009508: plastid chromosome1.06E-02
38GO:0000312: plastid small ribosomal subunit1.16E-02
39GO:0005874: microtubule1.40E-02
40GO:0042651: thylakoid membrane1.56E-02
41GO:0022625: cytosolic large ribosomal subunit1.56E-02
42GO:0009532: plastid stroma1.67E-02
43GO:0009536: plastid1.88E-02
44GO:0005871: kinesin complex2.13E-02
45GO:0010287: plastoglobule2.19E-02
46GO:0009523: photosystem II2.63E-02
47GO:0031225: anchored component of membrane2.75E-02
48GO:0009295: nucleoid3.30E-02
49GO:0005778: peroxisomal membrane3.30E-02
50GO:0030529: intracellular ribonucleoprotein complex3.58E-02
51GO:0009707: chloroplast outer membrane4.33E-02
Gene type



Gene DE type