co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051503: adenine nucleotide transport	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:0010028: xanthophyll cycle	1.97E-05
4	GO:0019253: reductive pentose-phosphate cycle	2.16E-05
5	GO:0033014: tetrapyrrole biosynthetic process	1.36E-04
6	GO:0010731: protein glutathionylation	1.36E-04
7	GO:2001141: regulation of RNA biosynthetic process	1.36E-04
8	GO:0046902: regulation of mitochondrial membrane permeability	1.36E-04
9	GO:0019464: glycine decarboxylation via glycine cleavage system	1.86E-04
10	GO:0009853: photorespiration	2.37E-04
11	GO:0009744: response to sucrose	3.07E-04
12	GO:0009854: oxidative photosynthetic carbon pathway	3.57E-04
13	GO:0006096: glycolytic process	4.86E-04
14	GO:0071482: cellular response to light stimulus	5.50E-04
15	GO:0006783: heme biosynthetic process	6.19E-04
16	GO:0098656: anion transmembrane transport	6.19E-04
17	GO:0006779: porphyrin-containing compound biosynthetic process	6.90E-04
18	GO:0006352: DNA-templated transcription, initiation	8.37E-04
19	GO:0018119: peptidyl-cysteine S-nitrosylation	8.37E-04
20	GO:0006006: glucose metabolic process	9.90E-04
21	GO:0009767: photosynthetic electron transport chain	9.90E-04
22	GO:0080092: regulation of pollen tube growth	1.59E-03
23	GO:0009409: response to cold	2.00E-03
24	GO:0032259: methylation	2.56E-03
25	GO:0008152: metabolic process	2.94E-03
26	GO:0009416: response to light stimulus	4.70E-03
27	GO:0009636: response to toxic substance	5.56E-03
28	GO:0051603: proteolysis involved in cellular protein catabolic process	6.46E-03
29	GO:0048367: shoot system development	7.24E-03
30	GO:0048316: seed development	7.24E-03
31	GO:0006470: protein dephosphorylation	1.30E-02
32	GO:0006810: transport	1.40E-02
33	GO:0046686: response to cadmium ion	1.49E-02
34	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.52E-02
35	GO:0080167: response to karrikin	1.87E-02
36	GO:0045454: cell redox homeostasis	2.13E-02
37	GO:0048364: root development	2.55E-02
38	GO:0055114: oxidation-reduction process	3.27E-02
39	GO:0009735: response to cytokinin	3.49E-02
40	GO:0055085: transmembrane transport	4.41E-02
41	GO:0006457: protein folding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
3	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.97E-05
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.97E-05
5	GO:0004325: ferrochelatase activity	1.97E-05
6	GO:0004618: phosphoglycerate kinase activity	5.10E-05
7	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.10E-05
8	GO:0004324: ferredoxin-NADP+ reductase activity	9.05E-05
9	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.36E-04
10	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.36E-04
11	GO:0001053: plastid sigma factor activity	1.86E-04
12	GO:0016987: sigma factor activity	1.86E-04
13	GO:0003959: NADPH dehydrogenase activity	2.40E-04
14	GO:0005471: ATP:ADP antiporter activity	2.40E-04
15	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.57E-04
16	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.37E-04
17	GO:0005315: inorganic phosphate transmembrane transporter activity	9.90E-04
18	GO:0031072: heat shock protein binding	9.90E-04
19	GO:0008266: poly(U) RNA binding	1.07E-03
20	GO:0004725: protein tyrosine phosphatase activity	1.23E-03
21	GO:0008168: methyltransferase activity	1.43E-03
22	GO:0003756: protein disulfide isomerase activity	1.78E-03
23	GO:0008514: organic anion transmembrane transporter activity	1.78E-03
24	GO:0008080: N-acetyltransferase activity	2.08E-03
25	GO:0048038: quinone binding	2.40E-03
26	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.61E-03
27	GO:0016597: amino acid binding	2.95E-03
28	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.55E-03
29	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.45E-03
30	GO:0050661: NADP binding	4.72E-03
31	GO:0004364: glutathione transferase activity	4.99E-03
32	GO:0004185: serine-type carboxypeptidase activity	5.13E-03
33	GO:0051287: NAD binding	5.86E-03
34	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.31E-03
35	GO:0080043: quercetin 3-O-glucosyltransferase activity	7.56E-03
36	GO:0080044: quercetin 7-O-glucosyltransferase activity	7.56E-03
37	GO:0051082: unfolded protein binding	8.05E-03
38	GO:0016746: transferase activity, transferring acyl groups	8.22E-03
39	GO:0016491: oxidoreductase activity	1.25E-02
40	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
41	GO:0016787: hydrolase activity	2.05E-02
42	GO:0016740: transferase activity	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.58E-11
2	GO:0009570: chloroplast stroma	1.09E-06
3	GO:0010319: stromule	1.98E-06
4	GO:0009941: chloroplast envelope	4.68E-06
5	GO:0009535: chloroplast thylakoid membrane	6.99E-06
6	GO:0005960: glycine cleavage complex	1.36E-04
7	GO:0055035: plastid thylakoid membrane	2.40E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.19E-04
9	GO:0009579: thylakoid	7.16E-04
10	GO:0009508: plastid chromosome	9.90E-04
11	GO:0031969: chloroplast membrane	1.82E-03
12	GO:0009295: nucleoid	2.84E-03
13	GO:0031977: thylakoid lumen	4.86E-03
14	GO:0009534: chloroplast thylakoid	5.67E-03
15	GO:0048046: apoplast	6.98E-03
16	GO:0009706: chloroplast inner membrane	8.05E-03
17	GO:0005743: mitochondrial inner membrane	2.35E-02
18	GO:0043231: intracellular membrane-bounded organelle	2.65E-02
19	GO:0005618: cell wall	3.78E-02