co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0006066: alcohol metabolic process	0.00E+00
6	GO:0042493: response to drug	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	5.34E-07
8	GO:0015979: photosynthesis	2.40E-06
9	GO:0090391: granum assembly	1.22E-05
10	GO:0016024: CDP-diacylglycerol biosynthetic process	3.55E-05
11	GO:0010027: thylakoid membrane organization	4.40E-05
12	GO:0006655: phosphatidylglycerol biosynthetic process	1.15E-04
13	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.55E-04
14	GO:1901259: chloroplast rRNA processing	1.58E-04
15	GO:0009772: photosynthetic electron transport in photosystem II	2.07E-04
16	GO:0010196: nonphotochemical quenching	2.07E-04
17	GO:0042335: cuticle development	2.19E-04
18	GO:0034337: RNA folding	2.72E-04
19	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.72E-04
20	GO:0071588: hydrogen peroxide mediated signaling pathway	2.72E-04
21	GO:0042759: long-chain fatty acid biosynthetic process	2.72E-04
22	GO:0042371: vitamin K biosynthetic process	2.72E-04
23	GO:0006106: fumarate metabolic process	2.72E-04
24	GO:0032544: plastid translation	3.23E-04
25	GO:0010206: photosystem II repair	3.90E-04
26	GO:0009828: plant-type cell wall loosening	4.17E-04
27	GO:0010024: phytochromobilin biosynthetic process	5.99E-04
28	GO:0010115: regulation of abscisic acid biosynthetic process	5.99E-04
29	GO:0006898: receptor-mediated endocytosis	5.99E-04
30	GO:0034755: iron ion transmembrane transport	5.99E-04
31	GO:0010541: acropetal auxin transport	5.99E-04
32	GO:1900033: negative regulation of trichome patterning	5.99E-04
33	GO:0001736: establishment of planar polarity	5.99E-04
34	GO:0046856: phosphatidylinositol dephosphorylation	6.22E-04
35	GO:0015995: chlorophyll biosynthetic process	6.44E-04
36	GO:0009735: response to cytokinin	8.14E-04
37	GO:0046168: glycerol-3-phosphate catabolic process	9.72E-04
38	GO:0006788: heme oxidation	9.72E-04
39	GO:0006013: mannose metabolic process	9.72E-04
40	GO:0010160: formation of animal organ boundary	9.72E-04
41	GO:0016045: detection of bacterium	9.72E-04
42	GO:0010359: regulation of anion channel activity	9.72E-04
43	GO:0010025: wax biosynthetic process	1.12E-03
44	GO:0051017: actin filament bundle assembly	1.24E-03
45	GO:0016042: lipid catabolic process	1.28E-03
46	GO:0009413: response to flooding	1.39E-03
47	GO:0010371: regulation of gibberellin biosynthetic process	1.39E-03
48	GO:0051513: regulation of monopolar cell growth	1.39E-03
49	GO:0051639: actin filament network formation	1.39E-03
50	GO:0010239: chloroplast mRNA processing	1.39E-03
51	GO:0080170: hydrogen peroxide transmembrane transport	1.39E-03
52	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.39E-03
53	GO:0006072: glycerol-3-phosphate metabolic process	1.39E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.39E-03
55	GO:0009650: UV protection	1.39E-03
56	GO:1901332: negative regulation of lateral root development	1.39E-03
57	GO:0009664: plant-type cell wall organization	1.80E-03
58	GO:0048629: trichome patterning	1.86E-03
59	GO:0010109: regulation of photosynthesis	1.86E-03
60	GO:0051764: actin crosslink formation	1.86E-03
61	GO:0045727: positive regulation of translation	1.86E-03
62	GO:0030104: water homeostasis	1.86E-03
63	GO:0080022: primary root development	2.27E-03
64	GO:0034220: ion transmembrane transport	2.27E-03
65	GO:0010236: plastoquinone biosynthetic process	2.37E-03
66	GO:0009958: positive gravitropism	2.45E-03
67	GO:0010305: leaf vascular tissue pattern formation	2.45E-03
68	GO:0006751: glutathione catabolic process	2.93E-03
69	GO:0009913: epidermal cell differentiation	2.93E-03
70	GO:0060918: auxin transport	2.93E-03
71	GO:0006561: proline biosynthetic process	2.93E-03
72	GO:0000302: response to reactive oxygen species	3.02E-03
73	GO:0080167: response to karrikin	3.16E-03
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	3.52E-03
76	GO:0042372: phylloquinone biosynthetic process	3.52E-03
77	GO:0017148: negative regulation of translation	3.52E-03
78	GO:0009416: response to light stimulus	3.71E-03
79	GO:1900056: negative regulation of leaf senescence	4.15E-03
80	GO:1900057: positive regulation of leaf senescence	4.15E-03
81	GO:0010444: guard mother cell differentiation	4.15E-03
82	GO:0031540: regulation of anthocyanin biosynthetic process	4.82E-03
83	GO:0055075: potassium ion homeostasis	4.82E-03
84	GO:0048564: photosystem I assembly	4.82E-03
85	GO:0008610: lipid biosynthetic process	4.82E-03
86	GO:0006353: DNA-templated transcription, termination	4.82E-03
87	GO:0006605: protein targeting	4.82E-03
88	GO:0009627: systemic acquired resistance	4.86E-03
89	GO:0010311: lateral root formation	5.97E-03
90	GO:0045490: pectin catabolic process	6.18E-03
91	GO:0009051: pentose-phosphate shunt, oxidative branch	6.25E-03
92	GO:0009245: lipid A biosynthetic process	6.25E-03
93	GO:0009631: cold acclimation	6.57E-03
94	GO:0009638: phototropism	7.03E-03
95	GO:0034599: cellular response to oxidative stress	7.53E-03
96	GO:0006949: syncytium formation	7.82E-03
97	GO:0006535: cysteine biosynthetic process from serine	7.82E-03
98	GO:0009688: abscisic acid biosynthetic process	7.82E-03
99	GO:0048829: root cap development	7.82E-03
100	GO:0048765: root hair cell differentiation	8.66E-03
101	GO:0000038: very long-chain fatty acid metabolic process	8.66E-03
102	GO:0052544: defense response by callose deposition in cell wall	8.66E-03
103	GO:0008285: negative regulation of cell proliferation	8.66E-03
104	GO:0006879: cellular iron ion homeostasis	8.66E-03
105	GO:0009750: response to fructose	8.66E-03
106	GO:0009926: auxin polar transport	9.30E-03
107	GO:0009640: photomorphogenesis	9.30E-03
108	GO:0008361: regulation of cell size	9.52E-03
109	GO:0015706: nitrate transport	9.52E-03
110	GO:0009734: auxin-activated signaling pathway	9.63E-03
111	GO:0009826: unidimensional cell growth	1.03E-02
112	GO:0010229: inflorescence development	1.04E-02
113	GO:0050826: response to freezing	1.04E-02
114	GO:0010588: cotyledon vascular tissue pattern formation	1.04E-02
115	GO:2000012: regulation of auxin polar transport	1.04E-02
116	GO:0010102: lateral root morphogenesis	1.04E-02
117	GO:0009785: blue light signaling pathway	1.04E-02
118	GO:0010628: positive regulation of gene expression	1.04E-02
119	GO:0006108: malate metabolic process	1.04E-02
120	GO:0006006: glucose metabolic process	1.04E-02
121	GO:0009658: chloroplast organization	1.08E-02
122	GO:0042254: ribosome biogenesis	1.10E-02
123	GO:0010540: basipetal auxin transport	1.13E-02
124	GO:0048467: gynoecium development	1.13E-02
125	GO:0010143: cutin biosynthetic process	1.13E-02
126	GO:0010207: photosystem II assembly	1.13E-02
127	GO:0010167: response to nitrate	1.23E-02
128	GO:0071732: cellular response to nitric oxide	1.23E-02
129	GO:0010030: positive regulation of seed germination	1.23E-02
130	GO:0006364: rRNA processing	1.26E-02
131	GO:0006833: water transport	1.33E-02
132	GO:0042023: DNA endoreduplication	1.33E-02
133	GO:0019344: cysteine biosynthetic process	1.43E-02
134	GO:0080147: root hair cell development	1.43E-02
135	GO:2000377: regulation of reactive oxygen species metabolic process	1.43E-02
136	GO:0010073: meristem maintenance	1.53E-02
137	GO:0019953: sexual reproduction	1.53E-02
138	GO:0007017: microtubule-based process	1.53E-02
139	GO:0009733: response to auxin	1.55E-02
140	GO:0048511: rhythmic process	1.64E-02
141	GO:0003333: amino acid transmembrane transport	1.64E-02
142	GO:0030245: cellulose catabolic process	1.75E-02
143	GO:0009624: response to nematode	1.79E-02
144	GO:0010227: floral organ abscission	1.86E-02
145	GO:0009411: response to UV	1.86E-02
146	GO:0071369: cellular response to ethylene stimulus	1.86E-02
147	GO:0048443: stamen development	1.97E-02
148	GO:0009306: protein secretion	1.97E-02
149	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.09E-02
150	GO:0032259: methylation	2.20E-02
151	GO:0010087: phloem or xylem histogenesis	2.21E-02
152	GO:0042631: cellular response to water deprivation	2.21E-02
153	GO:0010182: sugar mediated signaling pathway	2.33E-02
154	GO:0071472: cellular response to salt stress	2.33E-02
155	GO:0042752: regulation of circadian rhythm	2.45E-02
156	GO:0015986: ATP synthesis coupled proton transport	2.45E-02
157	GO:0042744: hydrogen peroxide catabolic process	2.56E-02
158	GO:0006633: fatty acid biosynthetic process	2.82E-02
159	GO:0016032: viral process	2.84E-02
160	GO:0030163: protein catabolic process	2.97E-02
161	GO:0071281: cellular response to iron ion	2.97E-02
162	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
163	GO:0010252: auxin homeostasis	3.10E-02
164	GO:0009639: response to red or far red light	3.10E-02
165	GO:0009739: response to gibberellin	3.47E-02
166	GO:0042128: nitrate assimilation	3.80E-02
167	GO:0010218: response to far red light	4.55E-02
168	GO:0007568: aging	4.71E-02
169	GO:0048527: lateral root development	4.71E-02
170	GO:0006865: amino acid transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
4	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0047661: amino-acid racemase activity	0.00E+00
7	GO:0005528: FK506 binding	7.69E-10
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-06
9	GO:0019843: rRNA binding	9.76E-06
10	GO:0001872: (1->3)-beta-D-glucan binding	2.76E-05
11	GO:0016851: magnesium chelatase activity	2.76E-05
12	GO:0004130: cytochrome-c peroxidase activity	1.15E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.15E-04
14	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.15E-04
15	GO:0004333: fumarate hydratase activity	2.72E-04
16	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.72E-04
17	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-04
18	GO:0016746: transferase activity, transferring acyl groups	5.37E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	5.99E-04
20	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.11E-04
21	GO:0052689: carboxylic ester hydrolase activity	8.16E-04
22	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.72E-04
23	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.39E-03
24	GO:0043023: ribosomal large subunit binding	1.39E-03
25	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.69E-03
26	GO:0030570: pectate lyase activity	1.79E-03
27	GO:0004659: prenyltransferase activity	1.86E-03
28	GO:0010011: auxin binding	1.86E-03
29	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.86E-03
30	GO:0010328: auxin influx transmembrane transporter activity	1.86E-03
31	GO:0004392: heme oxygenase (decyclizing) activity	1.86E-03
32	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.86E-03
33	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
34	GO:0031177: phosphopantetheine binding	2.93E-03
35	GO:0016688: L-ascorbate peroxidase activity	2.93E-03
36	GO:0051015: actin filament binding	3.43E-03
37	GO:0004559: alpha-mannosidase activity	3.52E-03
38	GO:0004124: cysteine synthase activity	3.52E-03
39	GO:0016832: aldehyde-lyase activity	3.52E-03
40	GO:0051753: mannan synthase activity	3.52E-03
41	GO:0004017: adenylate kinase activity	3.52E-03
42	GO:0000035: acyl binding	3.52E-03
43	GO:0016791: phosphatase activity	3.65E-03
44	GO:0015250: water channel activity	4.36E-03
45	GO:0016829: lyase activity	4.54E-03
46	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.82E-03
47	GO:0043022: ribosome binding	4.82E-03
48	GO:0030247: polysaccharide binding	5.13E-03
49	GO:0015112: nitrate transmembrane transporter activity	7.03E-03
50	GO:0005381: iron ion transmembrane transporter activity	7.03E-03
51	GO:0015020: glucuronosyltransferase activity	7.82E-03
52	GO:0047372: acylglycerol lipase activity	8.66E-03
53	GO:0008794: arsenate reductase (glutaredoxin) activity	8.66E-03
54	GO:0031072: heat shock protein binding	1.04E-02
55	GO:0004565: beta-galactosidase activity	1.04E-02
56	GO:0010329: auxin efflux transmembrane transporter activity	1.04E-02
57	GO:0004022: alcohol dehydrogenase (NAD) activity	1.04E-02
58	GO:0015293: symporter activity	1.05E-02
59	GO:0008266: poly(U) RNA binding	1.13E-02
60	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.33E-02
61	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.33E-02
62	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.33E-02
63	GO:0005515: protein binding	1.45E-02
64	GO:0008810: cellulase activity	1.86E-02
65	GO:0004871: signal transducer activity	1.89E-02
66	GO:0003756: protein disulfide isomerase activity	1.97E-02
67	GO:0008080: N-acetyltransferase activity	2.33E-02
68	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.33E-02
69	GO:0050662: coenzyme binding	2.45E-02
70	GO:0009055: electron carrier activity	2.53E-02
71	GO:0004518: nuclease activity	2.84E-02
72	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.89E-02
73	GO:0046910: pectinesterase inhibitor activity	2.89E-02
74	GO:0005200: structural constituent of cytoskeleton	3.24E-02
75	GO:0016597: amino acid binding	3.38E-02
76	GO:0005509: calcium ion binding	3.45E-02
77	GO:0008375: acetylglucosaminyltransferase activity	3.80E-02
78	GO:0003735: structural constituent of ribosome	4.04E-02
79	GO:0008236: serine-type peptidase activity	4.10E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-02
81	GO:0005215: transporter activity	4.48E-02
82	GO:0008168: methyltransferase activity	4.60E-02
83	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	4.44E-18
3	GO:0009543: chloroplast thylakoid lumen	3.90E-17
4	GO:0009534: chloroplast thylakoid	1.58E-15
5	GO:0009579: thylakoid	4.15E-13
6	GO:0009535: chloroplast thylakoid membrane	8.97E-13
7	GO:0031977: thylakoid lumen	1.49E-11
8	GO:0009570: chloroplast stroma	2.04E-10
9	GO:0009941: chloroplast envelope	2.60E-08
10	GO:0009654: photosystem II oxygen evolving complex	3.66E-06
11	GO:0010007: magnesium chelatase complex	1.22E-05
12	GO:0019898: extrinsic component of membrane	1.82E-05
13	GO:0005618: cell wall	1.51E-04
14	GO:0045239: tricarboxylic acid cycle enzyme complex	2.72E-04
15	GO:0043674: columella	2.72E-04
16	GO:0030093: chloroplast photosystem I	5.99E-04
17	GO:0005886: plasma membrane	6.88E-04
18	GO:0030095: chloroplast photosystem II	9.06E-04
19	GO:0009509: chromoplast	9.72E-04
20	GO:0016020: membrane	9.81E-04
21	GO:0005840: ribosome	1.29E-03
22	GO:0015630: microtubule cytoskeleton	1.39E-03
23	GO:0032432: actin filament bundle	1.39E-03
24	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.39E-03
25	GO:0031225: anchored component of membrane	2.34E-03
26	GO:0048046: apoplast	2.78E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.93E-03
28	GO:0031969: chloroplast membrane	3.16E-03
29	GO:0010287: plastoglobule	3.83E-03
30	GO:0009986: cell surface	4.15E-03
31	GO:0009533: chloroplast stromal thylakoid	4.15E-03
32	GO:0042807: central vacuole	4.15E-03
33	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.25E-03
34	GO:0008180: COP9 signalosome	6.25E-03
35	GO:0090404: pollen tube tip	8.66E-03
36	GO:0005884: actin filament	8.66E-03
37	GO:0046658: anchored component of plasma membrane	8.84E-03
38	GO:0032040: small-subunit processome	9.52E-03
39	GO:0009508: plastid chromosome	1.04E-02
40	GO:0005576: extracellular region	1.78E-02
41	GO:0015629: actin cytoskeleton	1.86E-02
42	GO:0009505: plant-type cell wall	1.87E-02
43	GO:0009523: photosystem II	2.58E-02
44	GO:0010319: stromule	3.24E-02
45	GO:0009295: nucleoid	3.24E-02
46	GO:0005768: endosome	3.33E-02
47	GO:0019005: SCF ubiquitin ligase complex	4.25E-02
48	GO:0000151: ubiquitin ligase complex	4.25E-02