co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009991: response to extracellular stimulus	0.00E+00
2	GO:0006593: ornithine catabolic process	0.00E+00
3	GO:0019544: arginine catabolic process to glutamate	1.13E-05
4	GO:0034214: protein hexamerization	1.13E-05
5	GO:0051646: mitochondrion localization	5.40E-05
6	GO:0070534: protein K63-linked ubiquitination	1.14E-04
7	GO:0046907: intracellular transport	1.49E-04
8	GO:0033365: protein localization to organelle	1.86E-04
9	GO:0006561: proline biosynthetic process	1.86E-04
10	GO:0006301: postreplication repair	1.86E-04
11	GO:0070814: hydrogen sulfide biosynthetic process	1.86E-04
12	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.86E-04
13	GO:0046470: phosphatidylcholine metabolic process	2.66E-04
14	GO:0030968: endoplasmic reticulum unfolded protein response	3.52E-04
15	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.97E-04
16	GO:2000280: regulation of root development	4.44E-04
17	GO:0007064: mitotic sister chromatid cohesion	4.91E-04
18	GO:0000103: sulfate assimilation	4.91E-04
19	GO:0019538: protein metabolic process	4.91E-04
20	GO:0072593: reactive oxygen species metabolic process	5.39E-04
21	GO:0009887: animal organ morphogenesis	6.92E-04
22	GO:0010039: response to iron ion	7.45E-04
23	GO:0010053: root epidermal cell differentiation	7.45E-04
24	GO:0006825: copper ion transport	9.08E-04
25	GO:0010154: fruit development	1.33E-03
26	GO:0006635: fatty acid beta-oxidation	1.52E-03
27	GO:0016032: viral process	1.59E-03
28	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.02E-03
29	GO:0009816: defense response to bacterium, incompatible interaction	2.02E-03
30	GO:0009817: defense response to fungus, incompatible interaction	2.32E-03
31	GO:0006811: ion transport	2.48E-03
32	GO:0048527: lateral root development	2.56E-03
33	GO:0009867: jasmonic acid mediated signaling pathway	2.72E-03
34	GO:0006631: fatty acid metabolic process	3.06E-03
35	GO:0042538: hyperosmotic salinity response	3.77E-03
36	GO:0009626: plant-type hypersensitive response	4.63E-03
37	GO:0009845: seed germination	6.20E-03
38	GO:0006633: fatty acid biosynthetic process	6.87E-03
39	GO:0010468: regulation of gene expression	8.30E-03
40	GO:0007165: signal transduction	9.94E-03
41	GO:0006970: response to osmotic stress	1.05E-02
42	GO:0009723: response to ethylene	1.10E-02
43	GO:0080167: response to karrikin	1.16E-02
44	GO:0045454: cell redox homeostasis	1.32E-02
45	GO:0048364: root development	1.57E-02
46	GO:0009651: response to salt stress	1.61E-02
47	GO:0009738: abscisic acid-activated signaling pathway	2.24E-02
48	GO:0035556: intracellular signal transduction	2.38E-02
49	GO:0006511: ubiquitin-dependent protein catabolic process	2.85E-02
50	GO:0006468: protein phosphorylation	3.71E-02
51	GO:0009414: response to water deprivation	3.73E-02
52	GO:0006979: response to oxidative stress	3.82E-02
53	GO:0015031: protein transport	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
2	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.00E-05
3	GO:0004781: sulfate adenylyltransferase (ATP) activity	5.40E-05
4	GO:0016531: copper chaperone activity	5.40E-05
5	GO:0004300: enoyl-CoA hydratase activity	8.23E-05
6	GO:0004416: hydroxyacylglutathione hydrolase activity	8.23E-05
7	GO:0102391: decanoate--CoA ligase activity	2.25E-04
8	GO:0004467: long-chain fatty acid-CoA ligase activity	2.66E-04
9	GO:0015288: porin activity	3.08E-04
10	GO:0015266: protein channel activity	6.40E-04
11	GO:0008408: 3'-5' exonuclease activity	9.65E-04
12	GO:0004871: signal transducer activity	1.17E-03
13	GO:0047134: protein-disulfide reductase activity	1.20E-03
14	GO:0004791: thioredoxin-disulfide reductase activity	1.39E-03
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.32E-03
16	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.89E-03
17	GO:0035091: phosphatidylinositol binding	3.41E-03
18	GO:0031625: ubiquitin protein ligase binding	4.24E-03
19	GO:0030170: pyridoxal phosphate binding	6.31E-03
20	GO:0008270: zinc ion binding	8.46E-03
21	GO:0042802: identical protein binding	8.67E-03
22	GO:0003682: chromatin binding	1.04E-02
23	GO:0061630: ubiquitin protein ligase activity	1.20E-02
24	GO:0042803: protein homodimerization activity	1.36E-02
25	GO:0003924: GTPase activity	1.53E-02
26	GO:0005524: ATP binding	1.60E-02
27	GO:0016887: ATPase activity	2.08E-02
28	GO:0000166: nucleotide binding	2.29E-02
29	GO:0005509: calcium ion binding	3.58E-02
30	GO:0005506: iron ion binding	3.75E-02
31	GO:0003824: catalytic activity	4.06E-02
32	GO:0004842: ubiquitin-protein transferase activity	4.78E-02
33	GO:0004672: protein kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009527: plastid outer membrane	1.14E-04
2	GO:0031372: UBC13-MMS2 complex	1.14E-04
3	GO:0032586: protein storage vacuole membrane	1.14E-04
4	GO:0000326: protein storage vacuole	3.52E-04
5	GO:0046930: pore complex	3.52E-04
6	GO:0005758: mitochondrial intermembrane space	8.54E-04
7	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.14E-03
8	GO:0005778: peroxisomal membrane	1.80E-03
9	GO:0009707: chloroplast outer membrane	2.32E-03
10	GO:0000502: proteasome complex	3.95E-03
11	GO:0005834: heterotrimeric G-protein complex	4.63E-03
12	GO:0005759: mitochondrial matrix	6.87E-03
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.06E-02
14	GO:0009941: chloroplast envelope	2.26E-02
15	GO:0005777: peroxisome	2.53E-02
16	GO:0005737: cytoplasm	3.13E-02
17	GO:0009570: chloroplast stroma	3.15E-02
18	GO:0005783: endoplasmic reticulum	3.35E-02
19	GO:0005622: intracellular	3.46E-02
20	GO:0005739: mitochondrion	4.72E-02