co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
2	GO:0006353: DNA-templated transcription, termination	2.67E-07
3	GO:0015995: chlorophyll biosynthetic process	1.54E-06
4	GO:1901259: chloroplast rRNA processing	2.05E-05
5	GO:0015979: photosynthesis	2.35E-05
6	GO:0042255: ribosome assembly	3.68E-05
7	GO:0010027: thylakoid membrane organization	4.33E-05
8	GO:0032544: plastid translation	4.70E-05
9	GO:0032365: intracellular lipid transport	7.58E-05
10	GO:0009735: response to cytokinin	1.21E-04
11	GO:0010020: chloroplast fission	1.55E-04
12	GO:0018026: peptidyl-lysine monomethylation	1.81E-04
13	GO:0006568: tryptophan metabolic process	1.81E-04
14	GO:0006457: protein folding	2.42E-04
15	GO:0090391: granum assembly	3.05E-04
16	GO:0015675: nickel cation transport	3.05E-04
17	GO:0033014: tetrapyrrole biosynthetic process	4.41E-04
18	GO:0006986: response to unfolded protein	4.41E-04
19	GO:0051085: chaperone mediated protein folding requiring cofactor	4.41E-04
20	GO:0010239: chloroplast mRNA processing	4.41E-04
21	GO:0032502: developmental process	5.81E-04
22	GO:0045038: protein import into chloroplast thylakoid membrane	7.44E-04
23	GO:0007094: mitotic spindle assembly checkpoint	7.44E-04
24	GO:0006412: translation	8.27E-04
25	GO:0042793: transcription from plastid promoter	9.07E-04
26	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.08E-03
27	GO:0009658: chloroplast organization	1.14E-03
28	GO:0009772: photosynthetic electron transport in photosystem II	1.26E-03
29	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.26E-03
30	GO:0010196: nonphotochemical quenching	1.26E-03
31	GO:0006605: protein targeting	1.46E-03
32	GO:0009231: riboflavin biosynthetic process	1.46E-03
33	GO:0048564: photosystem I assembly	1.46E-03
34	GO:0045292: mRNA cis splicing, via spliceosome	1.46E-03
35	GO:0006783: heme biosynthetic process	1.87E-03
36	GO:0000373: Group II intron splicing	1.87E-03
37	GO:1900865: chloroplast RNA modification	2.09E-03
38	GO:0031425: chloroplast RNA processing	2.09E-03
39	GO:0045036: protein targeting to chloroplast	2.32E-03
40	GO:0009073: aromatic amino acid family biosynthetic process	2.56E-03
41	GO:0009767: photosynthetic electron transport chain	3.06E-03
42	GO:2000012: regulation of auxin polar transport	3.06E-03
43	GO:0010207: photosystem II assembly	3.32E-03
44	GO:0051321: meiotic cell cycle	4.73E-03
45	GO:0030245: cellulose catabolic process	5.03E-03
46	GO:0009451: RNA modification	5.34E-03
47	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.34E-03
48	GO:0008380: RNA splicing	6.22E-03
49	GO:0080022: primary root development	6.31E-03
50	GO:0008033: tRNA processing	6.31E-03
51	GO:0007059: chromosome segregation	6.99E-03
52	GO:0009791: post-embryonic development	7.34E-03
53	GO:0016032: viral process	8.05E-03
54	GO:0009828: plant-type cell wall loosening	8.79E-03
55	GO:0030001: metal ion transport	1.55E-02
56	GO:0009664: plant-type cell wall organization	1.99E-02
57	GO:0006364: rRNA processing	2.10E-02
58	GO:0051603: proteolysis involved in cellular protein catabolic process	2.15E-02
59	GO:0009742: brassinosteroid mediated signaling pathway	2.81E-02
60	GO:0009793: embryo development ending in seed dormancy	3.51E-02
61	GO:0007166: cell surface receptor signaling pathway	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0030899: calcium-dependent ATPase activity	0.00E+00
2	GO:0019843: rRNA binding	1.02E-09
3	GO:0016851: magnesium chelatase activity	4.37E-09
4	GO:0051087: chaperone binding	6.09E-06
5	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	7.58E-05
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.58E-05
7	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	7.58E-05
8	GO:0003735: structural constituent of ribosome	8.07E-05
9	GO:0016630: protochlorophyllide reductase activity	1.81E-04
10	GO:0015099: nickel cation transmembrane transporter activity	1.81E-04
11	GO:0000774: adenyl-nucleotide exchange factor activity	1.81E-04
12	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.05E-04
13	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.05E-04
14	GO:0051082: unfolded protein binding	3.30E-04
15	GO:0003727: single-stranded RNA binding	3.52E-04
16	GO:0016279: protein-lysine N-methyltransferase activity	5.87E-04
17	GO:0005319: lipid transporter activity	5.87E-04
18	GO:0043495: protein anchor	5.87E-04
19	GO:0003723: RNA binding	6.02E-04
20	GO:0003959: NADPH dehydrogenase activity	7.44E-04
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.86E-03
22	GO:0042803: protein homodimerization activity	1.97E-03
23	GO:0047617: acyl-CoA hydrolase activity	2.09E-03
24	GO:0003690: double-stranded DNA binding	2.22E-03
25	GO:0005543: phospholipid binding	2.56E-03
26	GO:0008266: poly(U) RNA binding	3.32E-03
27	GO:0005528: FK506 binding	4.15E-03
28	GO:0016887: ATPase activity	4.21E-03
29	GO:0003729: mRNA binding	4.83E-03
30	GO:0008810: cellulase activity	5.34E-03
31	GO:0008080: N-acetyltransferase activity	6.64E-03
32	GO:0010181: FMN binding	6.99E-03
33	GO:0005507: copper ion binding	7.83E-03
34	GO:0003746: translation elongation factor activity	1.42E-02
35	GO:0004519: endonuclease activity	1.61E-02
36	GO:0004185: serine-type carboxypeptidase activity	1.70E-02
37	GO:0016491: oxidoreductase activity	1.74E-02
38	GO:0043621: protein self-association	1.79E-02
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.47E-02
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.78E-02
41	GO:0005525: GTP binding	4.31E-02
42	GO:0042802: identical protein binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.31E-31
2	GO:0009570: chloroplast stroma	2.75E-28
3	GO:0009941: chloroplast envelope	2.06E-17
4	GO:0009579: thylakoid	1.06E-11
5	GO:0010007: magnesium chelatase complex	1.22E-06
6	GO:0009535: chloroplast thylakoid membrane	1.76E-06
7	GO:0009534: chloroplast thylakoid	1.98E-06
8	GO:0009706: chloroplast inner membrane	2.21E-05
9	GO:0009543: chloroplast thylakoid lumen	3.45E-05
10	GO:0009295: nucleoid	3.61E-05
11	GO:0009515: granal stacked thylakoid	7.58E-05
12	GO:0009547: plastid ribosome	7.58E-05
13	GO:0005840: ribosome	1.04E-04
14	GO:0009508: plastid chromosome	1.36E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.81E-04
16	GO:0005828: kinetochore microtubule	5.87E-04
17	GO:0005759: mitochondrial matrix	5.89E-04
18	GO:0000776: kinetochore	7.44E-04
19	GO:0000777: condensed chromosome kinetochore	1.08E-03
20	GO:0031977: thylakoid lumen	1.48E-03
21	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.66E-03
22	GO:0005876: spindle microtubule	2.09E-03
23	GO:0090404: pollen tube tip	2.56E-03
24	GO:0000311: plastid large ribosomal subunit	2.80E-03
25	GO:0005578: proteinaceous extracellular matrix	3.06E-03
26	GO:0000312: plastid small ribosomal subunit	3.32E-03
27	GO:0030095: chloroplast photosystem II	3.32E-03
28	GO:0009536: plastid	3.60E-03
29	GO:0043234: protein complex	3.86E-03
30	GO:0042651: thylakoid membrane	4.43E-03
31	GO:0009654: photosystem II oxygen evolving complex	4.43E-03
32	GO:0009532: plastid stroma	4.73E-03
33	GO:0009523: photosystem II	7.34E-03
34	GO:0019898: extrinsic component of membrane	7.34E-03
35	GO:0030529: intracellular ribonucleoprotein complex	9.95E-03
36	GO:0043231: intracellular membrane-bounded organelle	1.63E-02
37	GO:0005623: cell	3.22E-02
38	GO:0009524: phragmoplast	3.28E-02
39	GO:0022627: cytosolic small ribosomal subunit	4.85E-02