Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
5GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
6GO:0006792: regulation of sulfur utilization0.00E+00
7GO:0010439: regulation of glucosinolate biosynthetic process1.96E-06
8GO:0050691: regulation of defense response to virus by host1.21E-05
9GO:0048438: floral whorl development1.21E-05
10GO:0019354: siroheme biosynthetic process1.21E-05
11GO:0010220: positive regulation of vernalization response3.21E-05
12GO:0080168: abscisic acid transport5.78E-05
13GO:0006556: S-adenosylmethionine biosynthetic process5.78E-05
14GO:0010200: response to chitin7.01E-05
15GO:0009751: response to salicylic acid1.16E-04
16GO:1902183: regulation of shoot apical meristem development1.59E-04
17GO:0010438: cellular response to sulfur starvation1.59E-04
18GO:0006555: methionine metabolic process1.98E-04
19GO:0000060: protein import into nucleus, translocation1.98E-04
20GO:0031347: regulation of defense response2.02E-04
21GO:0009809: lignin biosynthetic process2.26E-04
22GO:0010076: maintenance of floral meristem identity2.39E-04
23GO:0010077: maintenance of inflorescence meristem identity2.39E-04
24GO:2000070: regulation of response to water deprivation3.27E-04
25GO:0030162: regulation of proteolysis3.27E-04
26GO:0015780: nucleotide-sugar transport4.21E-04
27GO:0006779: porphyrin-containing compound biosynthetic process4.69E-04
28GO:1903507: negative regulation of nucleic acid-templated transcription5.71E-04
29GO:0010015: root morphogenesis5.71E-04
30GO:0009739: response to gibberellin6.14E-04
31GO:0016925: protein sumoylation6.23E-04
32GO:0010582: floral meristem determinacy6.23E-04
33GO:0002237: response to molecule of bacterial origin7.31E-04
34GO:2000022: regulation of jasmonic acid mediated signaling pathway1.08E-03
35GO:0006730: one-carbon metabolic process1.08E-03
36GO:0009411: response to UV1.14E-03
37GO:0045454: cell redox homeostasis1.21E-03
38GO:0010584: pollen exine formation1.21E-03
39GO:0006342: chromatin silencing1.40E-03
40GO:0009753: response to jasmonic acid1.59E-03
41GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.61E-03
42GO:0002229: defense response to oomycetes1.61E-03
43GO:0048573: photoperiodism, flowering2.30E-03
44GO:0042542: response to hydrogen peroxide3.33E-03
45GO:0008643: carbohydrate transport3.61E-03
46GO:0006855: drug transmembrane transport3.80E-03
47GO:0000165: MAPK cascade3.90E-03
48GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.90E-03
49GO:0009909: regulation of flower development4.50E-03
50GO:0009742: brassinosteroid mediated signaling pathway5.56E-03
51GO:0009733: response to auxin5.85E-03
52GO:0009845: seed germination6.58E-03
53GO:0009409: response to cold7.05E-03
54GO:0006413: translational initiation7.42E-03
55GO:0007623: circadian rhythm7.79E-03
56GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process8.43E-03
57GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.00E-02
58GO:0009658: chloroplast organization1.06E-02
59GO:0009737: response to abscisic acid1.11E-02
60GO:0009723: response to ethylene1.17E-02
61GO:0080167: response to karrikin1.23E-02
62GO:0032259: methylation1.57E-02
63GO:0006629: lipid metabolic process1.62E-02
64GO:0006355: regulation of transcription, DNA-templated1.92E-02
65GO:0009873: ethylene-activated signaling pathway1.95E-02
66GO:0009611: response to wounding2.48E-02
67GO:0045893: positive regulation of transcription, DNA-templated2.69E-02
68GO:0006351: transcription, DNA-templated3.19E-02
69GO:0042742: defense response to bacterium4.04E-02
70GO:0030154: cell differentiation4.29E-02
71GO:0055114: oxidation-reduction process4.72E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
3GO:0090440: abscisic acid transporter activity1.21E-05
4GO:0046982: protein heterodimerization activity4.68E-05
5GO:0004478: methionine adenosyltransferase activity5.78E-05
6GO:0031386: protein tag1.59E-04
7GO:0004784: superoxide dismutase activity1.98E-04
8GO:0005338: nucleotide-sugar transmembrane transporter activity2.82E-04
9GO:0016621: cinnamoyl-CoA reductase activity2.82E-04
10GO:0004860: protein kinase inhibitor activity5.71E-04
11GO:0003712: transcription cofactor activity7.88E-04
12GO:0003714: transcription corepressor activity9.02E-04
13GO:0004402: histone acetyltransferase activity1.34E-03
14GO:0015238: drug transmembrane transporter activity2.55E-03
15GO:0031625: ubiquitin protein ligase binding4.50E-03
16GO:0016874: ligase activity5.13E-03
17GO:0015035: protein disulfide oxidoreductase activity5.45E-03
18GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding6.82E-03
19GO:0015297: antiporter activity7.55E-03
20GO:0005351: sugar:proton symporter activity7.67E-03
21GO:0003743: translation initiation factor activity8.69E-03
22GO:0042802: identical protein binding9.21E-03
23GO:0008168: methyltransferase activity1.03E-02
24GO:0042803: protein homodimerization activity1.45E-02
25GO:0009055: electron carrier activity1.71E-02
26GO:0043565: sequence-specific DNA binding2.68E-02
27GO:0030246: carbohydrate binding3.02E-02
28GO:0005515: protein binding3.07E-02
29GO:0003700: transcription factor activity, sequence-specific DNA binding3.08E-02
30GO:0005516: calmodulin binding3.27E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0042644: chloroplast nucleoid4.21E-04
3GO:0000790: nuclear chromatin1.27E-03
4GO:0005770: late endosome1.40E-03
5GO:0009295: nucleoid1.91E-03
6GO:0019005: SCF ubiquitin ligase complex2.46E-03
7GO:0000786: nucleosome2.80E-03
8GO:0031902: late endosome membrane3.24E-03
9GO:0009579: thylakoid2.77E-02
10GO:0009534: chloroplast thylakoid2.79E-02
Gene type



Gene DE type