Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0045740: positive regulation of DNA replication0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0019253: reductive pentose-phosphate cycle1.09E-08
8GO:0006400: tRNA modification1.82E-05
9GO:0009443: pyridoxal 5'-phosphate salvage5.79E-05
10GO:0043686: co-translational protein modification5.79E-05
11GO:0010028: xanthophyll cycle5.79E-05
12GO:0018119: peptidyl-cysteine S-nitrosylation6.78E-05
13GO:0009658: chloroplast organization7.41E-05
14GO:0015979: photosynthesis1.38E-04
15GO:0030388: fructose 1,6-bisphosphate metabolic process1.41E-04
16GO:0010275: NAD(P)H dehydrogenase complex assembly1.41E-04
17GO:0006096: glycolytic process1.59E-04
18GO:0071492: cellular response to UV-A2.40E-04
19GO:0006696: ergosterol biosynthetic process2.40E-04
20GO:0006000: fructose metabolic process2.40E-04
21GO:0010581: regulation of starch biosynthetic process2.40E-04
22GO:0016117: carotenoid biosynthetic process2.68E-04
23GO:0033014: tetrapyrrole biosynthetic process3.49E-04
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.49E-04
25GO:0006020: inositol metabolic process3.49E-04
26GO:0051513: regulation of monopolar cell growth3.49E-04
27GO:0016556: mRNA modification3.49E-04
28GO:0009735: response to cytokinin4.65E-04
29GO:0006021: inositol biosynthetic process4.66E-04
30GO:0071486: cellular response to high light intensity4.66E-04
31GO:0045727: positive regulation of translation4.66E-04
32GO:0031365: N-terminal protein amino acid modification5.92E-04
33GO:0010304: PSII associated light-harvesting complex II catabolic process7.24E-04
34GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity7.24E-04
35GO:0046855: inositol phosphate dephosphorylation7.24E-04
36GO:0007050: cell cycle arrest1.01E-03
37GO:0000082: G1/S transition of mitotic cell cycle1.01E-03
38GO:0048564: photosystem I assembly1.16E-03
39GO:0005978: glycogen biosynthetic process1.16E-03
40GO:0019430: removal of superoxide radicals1.32E-03
41GO:0032544: plastid translation1.32E-03
42GO:0006002: fructose 6-phosphate metabolic process1.32E-03
43GO:0010206: photosystem II repair1.48E-03
44GO:0006783: heme biosynthetic process1.48E-03
45GO:0098656: anion transmembrane transport1.48E-03
46GO:0009051: pentose-phosphate shunt, oxidative branch1.48E-03
47GO:0010205: photoinhibition1.65E-03
48GO:0006779: porphyrin-containing compound biosynthetic process1.65E-03
49GO:0010380: regulation of chlorophyll biosynthetic process1.65E-03
50GO:0043085: positive regulation of catalytic activity2.02E-03
51GO:0000272: polysaccharide catabolic process2.02E-03
52GO:0009773: photosynthetic electron transport in photosystem I2.02E-03
53GO:0006790: sulfur compound metabolic process2.21E-03
54GO:0006006: glucose metabolic process2.41E-03
55GO:0006094: gluconeogenesis2.41E-03
56GO:0005986: sucrose biosynthetic process2.41E-03
57GO:0010102: lateral root morphogenesis2.41E-03
58GO:0009409: response to cold2.43E-03
59GO:0010207: photosystem II assembly2.62E-03
60GO:0010020: chloroplast fission2.62E-03
61GO:0006810: transport2.75E-03
62GO:0046854: phosphatidylinositol phosphorylation2.82E-03
63GO:0005985: sucrose metabolic process2.82E-03
64GO:0046686: response to cadmium ion3.01E-03
65GO:0009416: response to light stimulus3.19E-03
66GO:0009611: response to wounding3.28E-03
67GO:0042631: cellular response to water deprivation4.95E-03
68GO:0006814: sodium ion transport5.48E-03
69GO:0019252: starch biosynthetic process5.75E-03
70GO:0009791: post-embryonic development5.75E-03
71GO:0030163: protein catabolic process6.59E-03
72GO:0045454: cell redox homeostasis8.40E-03
73GO:0048573: photoperiodism, flowering8.71E-03
74GO:0018298: protein-chromophore linkage9.36E-03
75GO:0009817: defense response to fungus, incompatible interaction9.36E-03
76GO:0010311: lateral root formation9.69E-03
77GO:0048527: lateral root development1.04E-02
78GO:0008152: metabolic process1.14E-02
79GO:0006839: mitochondrial transport1.21E-02
80GO:0009744: response to sucrose1.32E-02
81GO:0009644: response to high light intensity1.40E-02
82GO:0006364: rRNA processing1.63E-02
83GO:0055114: oxidation-reduction process1.71E-02
84GO:0048367: shoot system development1.88E-02
85GO:0055085: transmembrane transport2.34E-02
86GO:0009845: seed germination2.60E-02
87GO:0042744: hydrogen peroxide catabolic process2.70E-02
88GO:0006414: translational elongation2.75E-02
89GO:0007623: circadian rhythm3.09E-02
90GO:0010468: regulation of gene expression3.51E-02
91GO:0048366: leaf development4.74E-02
RankGO TermAdjusted P value
1GO:0015229: L-ascorbic acid transporter activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0004618: phosphoglycerate kinase activity1.97E-07
7GO:0004325: ferrochelatase activity5.79E-05
8GO:0042586: peptide deformylase activity5.79E-05
9GO:0051996: squalene synthase activity5.79E-05
10GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.41E-04
11GO:0010297: heteropolysaccharide binding1.41E-04
12GO:0052832: inositol monophosphate 3-phosphatase activity1.41E-04
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.41E-04
14GO:0008934: inositol monophosphate 1-phosphatase activity1.41E-04
15GO:0052833: inositol monophosphate 4-phosphatase activity1.41E-04
16GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.41E-04
17GO:0008967: phosphoglycolate phosphatase activity1.41E-04
18GO:0070402: NADPH binding2.40E-04
19GO:0003913: DNA photolyase activity2.40E-04
20GO:0004148: dihydrolipoyl dehydrogenase activity2.40E-04
21GO:0050662: coenzyme binding3.37E-04
22GO:0017057: 6-phosphogluconolactonase activity3.49E-04
23GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity3.49E-04
24GO:0008508: bile acid:sodium symporter activity3.49E-04
25GO:0048038: quinone binding3.87E-04
26GO:0008878: glucose-1-phosphate adenylyltransferase activity4.66E-04
27GO:0004659: prenyltransferase activity4.66E-04
28GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.66E-04
29GO:0016773: phosphotransferase activity, alcohol group as acceptor5.92E-04
30GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity7.24E-04
31GO:0004222: metalloendopeptidase activity7.87E-04
32GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.63E-04
33GO:0003746: translation elongation factor activity8.97E-04
34GO:0009881: photoreceptor activity1.01E-03
35GO:0004033: aldo-keto reductase (NADP) activity1.16E-03
36GO:0008135: translation factor activity, RNA binding1.32E-03
37GO:0008047: enzyme activator activity1.83E-03
38GO:0005315: inorganic phosphate transmembrane transporter activity2.41E-03
39GO:0004565: beta-galactosidase activity2.41E-03
40GO:0004176: ATP-dependent peptidase activity3.72E-03
41GO:0016740: transferase activity4.10E-03
42GO:0008194: UDP-glycosyltransferase activity4.11E-03
43GO:0022891: substrate-specific transmembrane transporter activity4.20E-03
44GO:0008514: organic anion transmembrane transporter activity4.44E-03
45GO:0004791: thioredoxin-disulfide reductase activity5.48E-03
46GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.59E-03
47GO:0008237: metallopeptidase activity7.18E-03
48GO:0016168: chlorophyll binding8.08E-03
49GO:0050897: cobalt ion binding1.04E-02
50GO:0050661: NADP binding1.21E-02
51GO:0051539: 4 iron, 4 sulfur cluster binding1.21E-02
52GO:0051287: NAD binding1.51E-02
53GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.88E-02
54GO:0080043: quercetin 3-O-glucosyltransferase activity1.97E-02
55GO:0080044: quercetin 7-O-glucosyltransferase activity1.97E-02
56GO:0016758: transferase activity, transferring hexosyl groups2.41E-02
57GO:0019843: rRNA binding2.46E-02
58GO:0003824: catalytic activity4.09E-02
59GO:0008168: methyltransferase activity4.11E-02
60GO:0050660: flavin adenine dinucleotide binding4.68E-02
61GO:0016491: oxidoreductase activity4.90E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast2.55E-21
5GO:0009570: chloroplast stroma1.24E-12
6GO:0009941: chloroplast envelope3.09E-11
7GO:0009535: chloroplast thylakoid membrane2.73E-08
8GO:0010319: stromule3.71E-07
9GO:0009706: chloroplast inner membrane1.07E-05
10GO:0048046: apoplast2.39E-05
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.87E-05
12GO:0009579: thylakoid9.99E-05
13GO:0031969: chloroplast membrane1.10E-04
14GO:0000427: plastid-encoded plastid RNA polymerase complex1.41E-04
15GO:0005853: eukaryotic translation elongation factor 1 complex2.40E-04
16GO:0010287: plastoglobule2.59E-04
17GO:0055035: plastid thylakoid membrane5.92E-04
18GO:0009523: photosystem II5.75E-03
19GO:0009536: plastid1.01E-02
20GO:0043231: intracellular membrane-bounded organelle1.14E-02
21GO:0005747: mitochondrial respiratory chain complex I1.88E-02
22GO:0009534: chloroplast thylakoid2.23E-02
23GO:0005654: nucleoplasm2.41E-02
24GO:0005759: mitochondrial matrix2.89E-02
Gene type



Gene DE type





AT4G34090