co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046109: uridine biosynthetic process	0.00E+00
2	GO:0007141: male meiosis I	0.00E+00
3	GO:0035269: protein O-linked mannosylation	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
6	GO:0046686: response to cadmium ion	7.24E-05
7	GO:0009699: phenylpropanoid biosynthetic process	1.17E-04
8	GO:0010482: regulation of epidermal cell division	1.37E-04
9	GO:0080120: CAAX-box protein maturation	1.37E-04
10	GO:0071586: CAAX-box protein processing	1.37E-04
11	GO:0019567: arabinose biosynthetic process	1.37E-04
12	GO:0006422: aspartyl-tRNA aminoacylation	1.37E-04
13	GO:2000025: regulation of leaf formation	1.37E-04
14	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.14E-04
15	GO:0031349: positive regulation of defense response	3.16E-04
16	GO:0051258: protein polymerization	3.16E-04
17	GO:0060919: auxin influx	3.16E-04
18	GO:0097054: L-glutamate biosynthetic process	3.16E-04
19	GO:0010155: regulation of proton transport	3.16E-04
20	GO:0015824: proline transport	3.16E-04
21	GO:0009225: nucleotide-sugar metabolic process	3.99E-04
22	GO:0000209: protein polyubiquitination	4.24E-04
23	GO:0009734: auxin-activated signaling pathway	4.45E-04
24	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	5.15E-04
25	GO:0002230: positive regulation of defense response to virus by host	5.20E-04
26	GO:0071494: cellular response to UV-C	5.20E-04
27	GO:0090708: specification of plant organ axis polarity	5.20E-04
28	GO:0007131: reciprocal meiotic recombination	6.50E-04
29	GO:0006096: glycolytic process	7.27E-04
30	GO:0006537: glutamate biosynthetic process	7.44E-04
31	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.44E-04
32	GO:0072583: clathrin-dependent endocytosis	7.44E-04
33	GO:1902290: positive regulation of defense response to oomycetes	7.44E-04
34	GO:0001676: long-chain fatty acid metabolic process	7.44E-04
35	GO:2000114: regulation of establishment of cell polarity	7.44E-04
36	GO:0051567: histone H3-K9 methylation	9.85E-04
37	GO:0006542: glutamine biosynthetic process	9.85E-04
38	GO:0019676: ammonia assimilation cycle	9.85E-04
39	GO:0045227: capsule polysaccharide biosynthetic process	9.85E-04
40	GO:0033320: UDP-D-xylose biosynthetic process	9.85E-04
41	GO:0033358: UDP-L-arabinose biosynthetic process	9.85E-04
42	GO:0010363: regulation of plant-type hypersensitive response	9.85E-04
43	GO:0002098: tRNA wobble uridine modification	9.85E-04
44	GO:0000304: response to singlet oxygen	1.25E-03
45	GO:0098719: sodium ion import across plasma membrane	1.25E-03
46	GO:0018279: protein N-linked glycosylation via asparagine	1.25E-03
47	GO:0045116: protein neddylation	1.25E-03
48	GO:0010315: auxin efflux	1.53E-03
49	GO:0006014: D-ribose metabolic process	1.53E-03
50	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.53E-03
51	GO:0048232: male gamete generation	1.53E-03
52	GO:0070814: hydrogen sulfide biosynthetic process	1.53E-03
53	GO:0042732: D-xylose metabolic process	1.53E-03
54	GO:0042026: protein refolding	1.83E-03
55	GO:0006458: 'de novo' protein folding	1.83E-03
56	GO:0006694: steroid biosynthetic process	1.83E-03
57	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.83E-03
58	GO:1900057: positive regulation of leaf senescence	2.15E-03
59	GO:0048767: root hair elongation	2.29E-03
60	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.49E-03
61	GO:0009819: drought recovery	2.49E-03
62	GO:0006491: N-glycan processing	2.49E-03
63	GO:0048766: root hair initiation	2.49E-03
64	GO:0006506: GPI anchor biosynthetic process	2.49E-03
65	GO:0048658: anther wall tapetum development	2.49E-03
66	GO:0006102: isocitrate metabolic process	2.49E-03
67	GO:0010928: regulation of auxin mediated signaling pathway	2.49E-03
68	GO:0035265: organ growth	2.49E-03
69	GO:0007389: pattern specification process	2.85E-03
70	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.85E-03
71	GO:0006099: tricarboxylic acid cycle	2.87E-03
72	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.22E-03
73	GO:0080144: amino acid homeostasis	3.22E-03
74	GO:0048589: developmental growth	3.22E-03
75	GO:0006631: fatty acid metabolic process	3.26E-03
76	GO:0051453: regulation of intracellular pH	3.60E-03
77	GO:1900426: positive regulation of defense response to bacterium	3.60E-03
78	GO:0010018: far-red light signaling pathway	3.60E-03
79	GO:0006896: Golgi to vacuole transport	4.00E-03
80	GO:0051026: chiasma assembly	4.00E-03
81	GO:0000103: sulfate assimilation	4.00E-03
82	GO:0048829: root cap development	4.00E-03
83	GO:0018119: peptidyl-cysteine S-nitrosylation	4.42E-03
84	GO:0048765: root hair cell differentiation	4.42E-03
85	GO:0006486: protein glycosylation	4.75E-03
86	GO:0071365: cellular response to auxin stimulus	4.85E-03
87	GO:0000266: mitochondrial fission	4.85E-03
88	GO:0051603: proteolysis involved in cellular protein catabolic process	4.92E-03
89	GO:0006511: ubiquitin-dependent protein catabolic process	4.96E-03
90	GO:0045454: cell redox homeostasis	5.18E-03
91	GO:0006807: nitrogen compound metabolic process	5.30E-03
92	GO:0006006: glucose metabolic process	5.30E-03
93	GO:0055046: microgametogenesis	5.30E-03
94	GO:0007034: vacuolar transport	5.76E-03
95	GO:0010540: basipetal auxin transport	5.76E-03
96	GO:0048467: gynoecium development	5.76E-03
97	GO:0046688: response to copper ion	6.23E-03
98	GO:0034976: response to endoplasmic reticulum stress	6.71E-03
99	GO:0042753: positive regulation of circadian rhythm	6.71E-03
100	GO:0000162: tryptophan biosynthetic process	6.71E-03
101	GO:0006281: DNA repair	6.75E-03
102	GO:2000377: regulation of reactive oxygen species metabolic process	7.22E-03
103	GO:0010026: trichome differentiation	7.73E-03
104	GO:0006825: copper ion transport	7.73E-03
105	GO:0061077: chaperone-mediated protein folding	8.26E-03
106	GO:0030433: ubiquitin-dependent ERAD pathway	8.79E-03
107	GO:0007005: mitochondrion organization	8.79E-03
108	GO:0009058: biosynthetic process	8.92E-03
109	GO:0009294: DNA mediated transformation	9.35E-03
110	GO:0006012: galactose metabolic process	9.35E-03
111	GO:0009561: megagametogenesis	9.92E-03
112	GO:0080022: primary root development	1.11E-02
113	GO:0042631: cellular response to water deprivation	1.11E-02
114	GO:0006468: protein phosphorylation	1.16E-02
115	GO:0008360: regulation of cell shape	1.17E-02
116	GO:0071472: cellular response to salt stress	1.17E-02
117	GO:0010150: leaf senescence	1.17E-02
118	GO:0006814: sodium ion transport	1.23E-02
119	GO:0009735: response to cytokinin	1.25E-02
120	GO:0019252: starch biosynthetic process	1.29E-02
121	GO:0009556: microsporogenesis	1.29E-02
122	GO:0006623: protein targeting to vacuole	1.29E-02
123	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.31E-02
124	GO:0071554: cell wall organization or biogenesis	1.36E-02
125	GO:0000302: response to reactive oxygen species	1.36E-02
126	GO:0010193: response to ozone	1.36E-02
127	GO:0080156: mitochondrial mRNA modification	1.36E-02
128	GO:0009555: pollen development	1.40E-02
129	GO:0009617: response to bacterium	1.40E-02
130	GO:0010583: response to cyclopentenone	1.42E-02
131	GO:0031047: gene silencing by RNA	1.42E-02
132	GO:0009630: gravitropism	1.42E-02
133	GO:0030163: protein catabolic process	1.49E-02
134	GO:0010252: auxin homeostasis	1.55E-02
135	GO:0009639: response to red or far red light	1.55E-02
136	GO:0006914: autophagy	1.55E-02
137	GO:0006310: DNA recombination	1.55E-02
138	GO:0071805: potassium ion transmembrane transport	1.62E-02
139	GO:0006974: cellular response to DNA damage stimulus	1.90E-02
140	GO:0042128: nitrate assimilation	1.90E-02
141	GO:0030244: cellulose biosynthetic process	2.12E-02
142	GO:0009832: plant-type cell wall biogenesis	2.20E-02
143	GO:0010043: response to zinc ion	2.36E-02
144	GO:0007568: aging	2.36E-02
145	GO:0046777: protein autophosphorylation	2.41E-02
146	GO:0006865: amino acid transport	2.43E-02
147	GO:0045087: innate immune response	2.51E-02
148	GO:0016051: carbohydrate biosynthetic process	2.51E-02
149	GO:0015979: photosynthesis	2.57E-02
150	GO:0008283: cell proliferation	3.01E-02
151	GO:0009926: auxin polar transport	3.01E-02
152	GO:0009965: leaf morphogenesis	3.27E-02
153	GO:0009408: response to heat	3.32E-02
154	GO:0006260: DNA replication	3.45E-02
155	GO:0009664: plant-type cell wall organization	3.54E-02
156	GO:0009809: lignin biosynthetic process	3.72E-02
157	GO:0009585: red, far-red light phototransduction	3.72E-02
158	GO:0010224: response to UV-B	3.82E-02
159	GO:0009733: response to auxin	3.91E-02
160	GO:0009620: response to fungus	4.49E-02
161	GO:0055114: oxidation-reduction process	4.50E-02
162	GO:0050832: defense response to fungus	4.55E-02
163	GO:0016569: covalent chromatin modification	4.58E-02
164	GO:0018105: peptidyl-serine phosphorylation	4.88E-02
165	GO:0051726: regulation of cell cycle	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050220: prostaglandin-E synthase activity	0.00E+00
2	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
3	GO:0015930: glutamate synthase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
6	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
7	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
8	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
9	GO:0005507: copper ion binding	5.11E-06
10	GO:0005524: ATP binding	1.33E-05
11	GO:0010209: vacuolar sorting signal binding	1.37E-04
12	GO:0016041: glutamate synthase (ferredoxin) activity	1.37E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.37E-04
14	GO:0004815: aspartate-tRNA ligase activity	1.37E-04
15	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.16E-04
16	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.16E-04
17	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.16E-04
18	GO:0019781: NEDD8 activating enzyme activity	3.16E-04
19	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	3.16E-04
20	GO:0004750: ribulose-phosphate 3-epimerase activity	3.16E-04
21	GO:0031624: ubiquitin conjugating enzyme binding	3.55E-04
22	GO:0008253: 5'-nucleotidase activity	5.20E-04
23	GO:0004148: dihydrolipoyl dehydrogenase activity	5.20E-04
24	GO:0015193: L-proline transmembrane transporter activity	5.20E-04
25	GO:0004751: ribose-5-phosphate isomerase activity	5.20E-04
26	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	5.20E-04
27	GO:0004781: sulfate adenylyltransferase (ATP) activity	5.20E-04
28	GO:0016805: dipeptidase activity	5.20E-04
29	GO:0004324: ferredoxin-NADP+ reductase activity	5.20E-04
30	GO:0016531: copper chaperone activity	5.20E-04
31	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	5.20E-04
32	GO:0016656: monodehydroascorbate reductase (NADH) activity	7.44E-04
33	GO:0035198: miRNA binding	7.44E-04
34	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	7.44E-04
35	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	7.44E-04
36	GO:0003995: acyl-CoA dehydrogenase activity	9.85E-04
37	GO:0050373: UDP-arabinose 4-epimerase activity	9.85E-04
38	GO:0010328: auxin influx transmembrane transporter activity	9.85E-04
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.25E-03
40	GO:0051538: 3 iron, 4 sulfur cluster binding	1.25E-03
41	GO:0004356: glutamate-ammonia ligase activity	1.25E-03
42	GO:0008641: small protein activating enzyme activity	1.25E-03
43	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.53E-03
44	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.53E-03
45	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.53E-03
46	GO:0036402: proteasome-activating ATPase activity	1.53E-03
47	GO:0048040: UDP-glucuronate decarboxylase activity	1.53E-03
48	GO:0004526: ribonuclease P activity	1.53E-03
49	GO:0102391: decanoate--CoA ligase activity	1.83E-03
50	GO:0004747: ribokinase activity	1.83E-03
51	GO:0003978: UDP-glucose 4-epimerase activity	1.83E-03
52	GO:0004559: alpha-mannosidase activity	1.83E-03
53	GO:0070403: NAD+ binding	1.83E-03
54	GO:0004467: long-chain fatty acid-CoA ligase activity	2.15E-03
55	GO:0008235: metalloexopeptidase activity	2.15E-03
56	GO:0008865: fructokinase activity	2.49E-03
57	GO:0003824: catalytic activity	2.71E-03
58	GO:0003843: 1,3-beta-D-glucan synthase activity	2.85E-03
59	GO:0030955: potassium ion binding	3.60E-03
60	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.60E-03
61	GO:0004743: pyruvate kinase activity	3.60E-03
62	GO:0050660: flavin adenine dinucleotide binding	3.77E-03
63	GO:0004713: protein tyrosine kinase activity	4.00E-03
64	GO:0051287: NAD binding	4.27E-03
65	GO:0061630: ubiquitin protein ligase activity	4.39E-03
66	GO:0015386: potassium:proton antiporter activity	4.42E-03
67	GO:0004129: cytochrome-c oxidase activity	4.42E-03
68	GO:0001054: RNA polymerase I activity	4.42E-03
69	GO:0004177: aminopeptidase activity	4.42E-03
70	GO:0008559: xenobiotic-transporting ATPase activity	4.42E-03
71	GO:0044183: protein binding involved in protein folding	4.42E-03
72	GO:0010329: auxin efflux transmembrane transporter activity	5.30E-03
73	GO:0004175: endopeptidase activity	5.76E-03
74	GO:0017025: TBP-class protein binding	6.23E-03
75	GO:0051536: iron-sulfur cluster binding	7.22E-03
76	GO:0043130: ubiquitin binding	7.22E-03
77	GO:0004298: threonine-type endopeptidase activity	8.26E-03
78	GO:0008408: 3'-5' exonuclease activity	8.26E-03
79	GO:0003756: protein disulfide isomerase activity	9.92E-03
80	GO:0004402: histone acetyltransferase activity	1.11E-02
81	GO:0030276: clathrin binding	1.17E-02
82	GO:0016853: isomerase activity	1.23E-02
83	GO:0004674: protein serine/threonine kinase activity	1.29E-02
84	GO:0015385: sodium:proton antiporter activity	1.49E-02
85	GO:0016413: O-acetyltransferase activity	1.69E-02
86	GO:0000287: magnesium ion binding	1.78E-02
87	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.90E-02
88	GO:0004806: triglyceride lipase activity	1.98E-02
89	GO:0004683: calmodulin-dependent protein kinase activity	1.98E-02
90	GO:0004222: metalloendopeptidase activity	2.28E-02
91	GO:0050897: cobalt ion binding	2.36E-02
92	GO:0030145: manganese ion binding	2.36E-02
93	GO:0003697: single-stranded DNA binding	2.51E-02
94	GO:0016301: kinase activity	2.53E-02
95	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.68E-02
96	GO:0050661: NADP binding	2.76E-02
97	GO:0005509: calcium ion binding	3.07E-02
98	GO:0043621: protein self-association	3.19E-02
99	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.72E-02
100	GO:0015171: amino acid transmembrane transporter activity	4.00E-02
101	GO:0016874: ligase activity	4.58E-02
102	GO:0051082: unfolded protein binding	4.78E-02
103	GO:0015035: protein disulfide oxidoreductase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	8.94E-09
2	GO:0005782: peroxisomal matrix	3.53E-06
3	GO:0005886: plasma membrane	1.22E-05
4	GO:0005783: endoplasmic reticulum	2.58E-05
5	GO:0000502: proteasome complex	5.35E-05
6	GO:0031595: nuclear proteasome complex	7.18E-05
7	GO:0032580: Golgi cisterna membrane	1.11E-04
8	GO:0045334: clathrin-coated endocytic vesicle	1.37E-04
9	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	1.37E-04
10	GO:0005737: cytoplasm	2.28E-04
11	GO:0008541: proteasome regulatory particle, lid subcomplex	2.39E-04
12	GO:0033185: dolichol-phosphate-mannose synthase complex	3.16E-04
13	GO:0005901: caveola	3.16E-04
14	GO:0005719: nuclear euchromatin	7.44E-04
15	GO:0033588: Elongator holoenzyme complex	7.44E-04
16	GO:0008250: oligosaccharyltransferase complex	1.25E-03
17	GO:0005746: mitochondrial respiratory chain	1.25E-03
18	GO:0031597: cytosolic proteasome complex	1.83E-03
19	GO:0005774: vacuolar membrane	2.05E-03
20	GO:0000151: ubiquitin ligase complex	2.18E-03
21	GO:0000148: 1,3-beta-D-glucan synthase complex	2.85E-03
22	GO:0005736: DNA-directed RNA polymerase I complex	3.22E-03
23	GO:0030665: clathrin-coated vesicle membrane	3.60E-03
24	GO:0008540: proteasome regulatory particle, base subcomplex	3.60E-03
25	GO:0005777: peroxisome	3.84E-03
26	GO:0017119: Golgi transport complex	4.00E-03
27	GO:0016021: integral component of membrane	4.28E-03
28	GO:0005789: endoplasmic reticulum membrane	4.83E-03
29	GO:0005773: vacuole	5.20E-03
30	GO:0005747: mitochondrial respiratory chain complex I	5.80E-03
31	GO:0030176: integral component of endoplasmic reticulum membrane	6.23E-03
32	GO:0005758: mitochondrial intermembrane space	7.22E-03
33	GO:0005839: proteasome core complex	8.26E-03
34	GO:0000790: nuclear chromatin	1.05E-02
35	GO:0005770: late endosome	1.17E-02
36	GO:0005794: Golgi apparatus	1.27E-02
37	GO:0009504: cell plate	1.29E-02
38	GO:0009506: plasmodesma	1.48E-02
39	GO:0005778: peroxisomal membrane	1.62E-02
40	GO:0005788: endoplasmic reticulum lumen	1.83E-02
41	GO:0009507: chloroplast	2.07E-02
42	GO:0009570: chloroplast stroma	2.23E-02
43	GO:0005802: trans-Golgi network	2.54E-02
44	GO:0031902: late endosome membrane	2.84E-02
45	GO:0005622: intracellular	2.89E-02
46	GO:0005768: endosome	2.98E-02
47	GO:0010008: endosome membrane	4.29E-02
48	GO:0016020: membrane	4.38E-02