co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032497: detection of lipopolysaccharide	0.00E+00
2	GO:0045022: early endosome to late endosome transport	0.00E+00
3	GO:0044249: cellular biosynthetic process	0.00E+00
4	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
5	GO:0070291: N-acylethanolamine metabolic process	0.00E+00
6	GO:0019509: L-methionine salvage from methylthioadenosine	2.61E-05
7	GO:0006635: fatty acid beta-oxidation	3.28E-05
8	GO:0035494: SNARE complex disassembly	8.78E-05
9	GO:0098721: uracil import across plasma membrane	8.78E-05
10	GO:0098702: adenine import across plasma membrane	8.78E-05
11	GO:1903648: positive regulation of chlorophyll catabolic process	8.78E-05
12	GO:0098710: guanine import across plasma membrane	8.78E-05
13	GO:0035344: hypoxanthine transport	8.78E-05
14	GO:1902000: homogentisate catabolic process	2.08E-04
15	GO:0009072: aromatic amino acid family metabolic process	3.48E-04
16	GO:0006572: tyrosine catabolic process	5.01E-04
17	GO:0051259: protein oligomerization	5.01E-04
18	GO:0010222: stem vascular tissue pattern formation	6.66E-04
19	GO:0070534: protein K63-linked ubiquitination	6.66E-04
20	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.03E-03
21	GO:0006301: postreplication repair	1.03E-03
22	GO:0006555: methionine metabolic process	1.03E-03
23	GO:0048573: photoperiodism, flowering	1.09E-03
24	GO:0048280: vesicle fusion with Golgi apparatus	1.23E-03
25	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.23E-03
26	GO:0006499: N-terminal protein myristoylation	1.32E-03
27	GO:1900057: positive regulation of leaf senescence	1.44E-03
28	GO:0006333: chromatin assembly or disassembly	1.44E-03
29	GO:0010044: response to aluminum ion	1.44E-03
30	GO:0098869: cellular oxidant detoxification	1.44E-03
31	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.44E-03
32	GO:0006605: protein targeting	1.66E-03
33	GO:0016559: peroxisome fission	1.66E-03
34	GO:0006972: hyperosmotic response	1.89E-03
35	GO:0046777: protein autophosphorylation	2.07E-03
36	GO:0008202: steroid metabolic process	2.39E-03
37	GO:0009641: shade avoidance	2.65E-03
38	GO:0006896: Golgi to vacuole transport	2.65E-03
39	GO:0000266: mitochondrial fission	3.21E-03
40	GO:0007034: vacuolar transport	3.80E-03
41	GO:0010039: response to iron ion	4.10E-03
42	GO:0071732: cellular response to nitric oxide	4.10E-03
43	GO:0010053: root epidermal cell differentiation	4.10E-03
44	GO:0010167: response to nitrate	4.10E-03
45	GO:2000377: regulation of reactive oxygen species metabolic process	4.74E-03
46	GO:0009695: jasmonic acid biosynthetic process	5.07E-03
47	GO:0051302: regulation of cell division	5.07E-03
48	GO:0009269: response to desiccation	5.42E-03
49	GO:0007005: mitochondrion organization	5.76E-03
50	GO:0071369: cellular response to ethylene stimulus	6.12E-03
51	GO:0071215: cellular response to abscisic acid stimulus	6.12E-03
52	GO:0010150: leaf senescence	6.35E-03
53	GO:0042147: retrograde transport, endosome to Golgi	6.86E-03
54	GO:0010051: xylem and phloem pattern formation	7.24E-03
55	GO:0042631: cellular response to water deprivation	7.24E-03
56	GO:0048544: recognition of pollen	8.02E-03
57	GO:0061025: membrane fusion	8.02E-03
58	GO:0009749: response to glucose	8.42E-03
59	GO:0006623: protein targeting to vacuole	8.42E-03
60	GO:0006891: intra-Golgi vesicle-mediated transport	8.83E-03
61	GO:0009630: gravitropism	9.24E-03
62	GO:0007264: small GTPase mediated signal transduction	9.24E-03
63	GO:0071281: cellular response to iron ion	9.67E-03
64	GO:0006914: autophagy	1.01E-02
65	GO:0019760: glucosinolate metabolic process	1.01E-02
66	GO:0010286: heat acclimation	1.05E-02
67	GO:0016579: protein deubiquitination	1.10E-02
68	GO:0009911: positive regulation of flower development	1.14E-02
69	GO:0006888: ER to Golgi vesicle-mediated transport	1.28E-02
70	GO:0008219: cell death	1.38E-02
71	GO:0009817: defense response to fungus, incompatible interaction	1.38E-02
72	GO:0045454: cell redox homeostasis	1.46E-02
73	GO:0009414: response to water deprivation	1.53E-02
74	GO:0006865: amino acid transport	1.58E-02
75	GO:0042742: defense response to bacterium	1.58E-02
76	GO:0006979: response to oxidative stress	1.59E-02
77	GO:0045087: innate immune response	1.63E-02
78	GO:0006099: tricarboxylic acid cycle	1.68E-02
79	GO:0006897: endocytosis	1.84E-02
80	GO:0009926: auxin polar transport	1.95E-02
81	GO:0009640: photomorphogenesis	1.95E-02
82	GO:0009651: response to salt stress	2.22E-02
83	GO:0055114: oxidation-reduction process	2.39E-02
84	GO:0051603: proteolysis involved in cellular protein catabolic process	2.47E-02
85	GO:0009909: regulation of flower development	2.60E-02
86	GO:0006096: glycolytic process	2.72E-02
87	GO:0046686: response to cadmium ion	2.75E-02
88	GO:0035556: intracellular signal transduction	3.38E-02
89	GO:0009845: seed germination	3.85E-02
90	GO:0007165: signal transduction	3.94E-02
91	GO:0055085: transmembrane transport	4.06E-02
92	GO:0006633: fatty acid biosynthetic process	4.28E-02
93	GO:0006511: ubiquitin-dependent protein catabolic process	4.34E-02
94	GO:0006413: translational initiation	4.35E-02
95	GO:0010228: vegetative to reproductive phase transition of meristem	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0103073: anandamide amidohydrolase activity	0.00E+00
2	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
3	GO:0102077: oleamide hydrolase activity	0.00E+00
4	GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity	0.00E+00
5	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
6	GO:0004334: fumarylacetoacetase activity	0.00E+00
7	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
8	GO:0004300: enoyl-CoA hydratase activity	3.77E-06
9	GO:0015207: adenine transmembrane transporter activity	8.78E-05
10	GO:0019707: protein-cysteine S-acyltransferase activity	8.78E-05
11	GO:0030275: LRR domain binding	8.78E-05
12	GO:0035671: enone reductase activity	8.78E-05
13	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	8.78E-05
14	GO:0015208: guanine transmembrane transporter activity	8.78E-05
15	GO:0015294: solute:cation symporter activity	8.78E-05
16	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	8.78E-05
17	GO:0030544: Hsp70 protein binding	8.78E-05
18	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	2.08E-04
19	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.08E-04
20	GO:0005483: soluble NSF attachment protein activity	3.48E-04
21	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.48E-04
22	GO:0005047: signal recognition particle binding	3.48E-04
23	GO:0004108: citrate (Si)-synthase activity	5.01E-04
24	GO:0030527: structural constituent of chromatin	5.01E-04
25	GO:0004165: dodecenoyl-CoA delta-isomerase activity	5.01E-04
26	GO:0016004: phospholipase activator activity	6.66E-04
27	GO:0019905: syntaxin binding	6.66E-04
28	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	6.66E-04
29	GO:0015210: uracil transmembrane transporter activity	6.66E-04
30	GO:0004040: amidase activity	8.44E-04
31	GO:0004602: glutathione peroxidase activity	1.23E-03
32	GO:0050897: cobalt ion binding	1.39E-03
33	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.66E-03
34	GO:0000989: transcription factor activity, transcription factor binding	2.14E-03
35	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.14E-03
36	GO:0009672: auxin:proton symporter activity	2.39E-03
37	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.39E-03
38	GO:0005525: GTP binding	2.61E-03
39	GO:0008234: cysteine-type peptidase activity	2.88E-03
40	GO:0031625: ubiquitin protein ligase binding	2.88E-03
41	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.21E-03
42	GO:0004725: protein tyrosine phosphatase activity	4.42E-03
43	GO:0043424: protein histidine kinase binding	5.07E-03
44	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.42E-03
45	GO:0016853: isomerase activity	8.02E-03
46	GO:0004872: receptor activity	8.42E-03
47	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.83E-03
48	GO:0004197: cysteine-type endopeptidase activity	9.24E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.67E-03
50	GO:0004674: protein serine/threonine kinase activity	1.26E-02
51	GO:0030247: polysaccharide binding	1.28E-02
52	GO:0005096: GTPase activator activity	1.43E-02
53	GO:0003746: translation elongation factor activity	1.63E-02
54	GO:0000149: SNARE binding	1.74E-02
55	GO:0003924: GTPase activity	1.81E-02
56	GO:0005484: SNAP receptor activity	1.95E-02
57	GO:0004672: protein kinase activity	2.56E-02
58	GO:0015171: amino acid transmembrane transporter activity	2.60E-02
59	GO:0022857: transmembrane transporter activity	2.97E-02
60	GO:0005515: protein binding	2.98E-02
61	GO:0016301: kinase activity	4.02E-02
62	GO:0043565: sequence-specific DNA binding	4.11E-02
63	GO:0005507: copper ion binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0000323: lytic vacuole	3.77E-06
4	GO:0005773: vacuole	3.85E-04
5	GO:0031372: UBC13-MMS2 complex	6.66E-04
6	GO:0005851: eukaryotic translation initiation factor 2B complex	1.03E-03
7	GO:0030140: trans-Golgi network transport vesicle	1.03E-03
8	GO:0000815: ESCRT III complex	1.23E-03
9	GO:0005777: peroxisome	1.51E-03
10	GO:0012507: ER to Golgi transport vesicle membrane	1.66E-03
11	GO:0031201: SNARE complex	1.79E-03
12	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.89E-03
13	GO:0031901: early endosome membrane	2.14E-03
14	GO:0005768: endosome	3.05E-03
15	GO:0005886: plasma membrane	3.15E-03
16	GO:0005764: lysosome	3.80E-03
17	GO:0005769: early endosome	4.42E-03
18	GO:0005741: mitochondrial outer membrane	5.42E-03
19	GO:0005789: endoplasmic reticulum membrane	6.81E-03
20	GO:0005774: vacuolar membrane	6.86E-03
21	GO:0005770: late endosome	7.62E-03
22	GO:0005783: endoplasmic reticulum	7.65E-03
23	GO:0000785: chromatin	9.24E-03
24	GO:0005778: peroxisomal membrane	1.05E-02
25	GO:0005802: trans-Golgi network	1.17E-02
26	GO:0000325: plant-type vacuole	1.53E-02
27	GO:0031902: late endosome membrane	1.84E-02
28	GO:0043231: intracellular membrane-bounded organelle	1.99E-02
29	GO:0009506: plasmodesma	2.60E-02
30	GO:0016021: integral component of membrane	2.96E-02
31	GO:0005759: mitochondrial matrix	4.28E-02
32	GO:0005794: Golgi apparatus	4.52E-02
33	GO:0005615: extracellular space	4.95E-02