co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0010336: gibberellic acid homeostasis	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0090393: sepal giant cell development	0.00E+00
7	GO:0071370: cellular response to gibberellin stimulus	0.00E+00
8	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
9	GO:0006810: transport	2.09E-05
10	GO:0019464: glycine decarboxylation via glycine cleavage system	3.60E-05
11	GO:0006546: glycine catabolic process	3.60E-05
12	GO:0009611: response to wounding	1.22E-04
13	GO:0000066: mitochondrial ornithine transport	2.25E-04
14	GO:0019510: S-adenosylhomocysteine catabolic process	2.25E-04
15	GO:0010597: green leaf volatile biosynthetic process	2.25E-04
16	GO:0006659: phosphatidylserine biosynthetic process	2.25E-04
17	GO:0080167: response to karrikin	4.16E-04
18	GO:0000272: polysaccharide catabolic process	4.76E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.00E-04
20	GO:2000123: positive regulation of stomatal complex development	5.00E-04
21	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.00E-04
22	GO:0009629: response to gravity	5.00E-04
23	GO:0033353: S-adenosylmethionine cycle	5.00E-04
24	GO:0015786: UDP-glucose transport	5.00E-04
25	GO:0015712: hexose phosphate transport	5.00E-04
26	GO:0009767: photosynthetic electron transport chain	6.19E-04
27	GO:0019253: reductive pentose-phosphate cycle	6.96E-04
28	GO:0005985: sucrose metabolic process	7.77E-04
29	GO:0005977: glycogen metabolic process	8.13E-04
30	GO:0015783: GDP-fucose transport	8.13E-04
31	GO:0006011: UDP-glucose metabolic process	8.13E-04
32	GO:0017157: regulation of exocytosis	8.13E-04
33	GO:0006000: fructose metabolic process	8.13E-04
34	GO:0035436: triose phosphate transmembrane transport	8.13E-04
35	GO:0044375: regulation of peroxisome size	8.13E-04
36	GO:0009833: plant-type primary cell wall biogenesis	8.64E-04
37	GO:0009617: response to bacterium	1.01E-03
38	GO:0009695: jasmonic acid biosynthetic process	1.05E-03
39	GO:0031408: oxylipin biosynthetic process	1.15E-03
40	GO:0032877: positive regulation of DNA endoreduplication	1.16E-03
41	GO:0046713: borate transport	1.16E-03
42	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.16E-03
43	GO:0072334: UDP-galactose transmembrane transport	1.16E-03
44	GO:0042823: pyridoxal phosphate biosynthetic process	1.16E-03
45	GO:0006542: glutamine biosynthetic process	1.54E-03
46	GO:0019676: ammonia assimilation cycle	1.54E-03
47	GO:0048442: sepal development	1.54E-03
48	GO:0009765: photosynthesis, light harvesting	1.54E-03
49	GO:0045727: positive regulation of translation	1.54E-03
50	GO:2000038: regulation of stomatal complex development	1.54E-03
51	GO:0006021: inositol biosynthetic process	1.54E-03
52	GO:0015713: phosphoglycerate transport	1.54E-03
53	GO:0034440: lipid oxidation	1.54E-03
54	GO:0009902: chloroplast relocation	1.54E-03
55	GO:0009694: jasmonic acid metabolic process	1.54E-03
56	GO:0016094: polyprenol biosynthetic process	1.97E-03
57	GO:0010375: stomatal complex patterning	1.97E-03
58	GO:0019408: dolichol biosynthetic process	1.97E-03
59	GO:0016120: carotene biosynthetic process	1.97E-03
60	GO:0071555: cell wall organization	2.25E-03
61	GO:0071554: cell wall organization or biogenesis	2.30E-03
62	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.43E-03
63	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.43E-03
64	GO:0006559: L-phenylalanine catabolic process	2.43E-03
65	GO:0009117: nucleotide metabolic process	2.43E-03
66	GO:0010942: positive regulation of cell death	2.43E-03
67	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.91E-03
68	GO:0045926: negative regulation of growth	2.91E-03
69	GO:0010076: maintenance of floral meristem identity	2.91E-03
70	GO:0017148: negative regulation of translation	2.91E-03
71	GO:0007267: cell-cell signaling	2.95E-03
72	GO:0080027: response to herbivore	3.43E-03
73	GO:0048573: photoperiodism, flowering	3.89E-03
74	GO:0031540: regulation of anthocyanin biosynthetic process	3.98E-03
75	GO:0052543: callose deposition in cell wall	3.98E-03
76	GO:0016559: peroxisome fission	3.98E-03
77	GO:0007155: cell adhesion	3.98E-03
78	GO:0009813: flavonoid biosynthetic process	4.53E-03
79	GO:0006002: fructose 6-phosphate metabolic process	4.56E-03
80	GO:0022900: electron transport chain	4.56E-03
81	GO:0032544: plastid translation	4.56E-03
82	GO:0010218: response to far red light	4.75E-03
83	GO:0007568: aging	4.98E-03
84	GO:0010119: regulation of stomatal movement	4.98E-03
85	GO:0009056: catabolic process	5.16E-03
86	GO:0048589: developmental growth	5.16E-03
87	GO:0009853: photorespiration	5.46E-03
88	GO:0010192: mucilage biosynthetic process	6.45E-03
89	GO:0051555: flavonol biosynthetic process	6.45E-03
90	GO:0048441: petal development	6.45E-03
91	GO:0010114: response to red light	7.04E-03
92	GO:0019684: photosynthesis, light reaction	7.13E-03
93	GO:0009773: photosynthetic electron transport in photosystem I	7.13E-03
94	GO:0043085: positive regulation of catalytic activity	7.13E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	7.13E-03
96	GO:0050826: response to freezing	8.57E-03
97	GO:0009725: response to hormone	8.57E-03
98	GO:0006094: gluconeogenesis	8.57E-03
99	GO:0005986: sucrose biosynthetic process	8.57E-03
100	GO:0009887: animal organ morphogenesis	9.33E-03
101	GO:0048768: root hair cell tip growth	9.33E-03
102	GO:0048440: carpel development	9.33E-03
103	GO:0007031: peroxisome organization	1.01E-02
104	GO:0042343: indole glucosinolate metabolic process	1.01E-02
105	GO:0006833: water transport	1.09E-02
106	GO:0007010: cytoskeleton organization	1.17E-02
107	GO:0009768: photosynthesis, light harvesting in photosystem I	1.26E-02
108	GO:0042545: cell wall modification	1.32E-02
109	GO:0098542: defense response to other organism	1.34E-02
110	GO:0006366: transcription from RNA polymerase II promoter	1.34E-02
111	GO:0006730: one-carbon metabolic process	1.43E-02
112	GO:0009294: DNA mediated transformation	1.53E-02
113	GO:0016042: lipid catabolic process	1.58E-02
114	GO:0005975: carbohydrate metabolic process	1.61E-02
115	GO:0048443: stamen development	1.62E-02
116	GO:0006284: base-excision repair	1.62E-02
117	GO:0019722: calcium-mediated signaling	1.62E-02
118	GO:0046686: response to cadmium ion	1.68E-02
119	GO:0016117: carotenoid biosynthetic process	1.71E-02
120	GO:0009753: response to jasmonic acid	1.79E-02
121	GO:0015991: ATP hydrolysis coupled proton transport	1.81E-02
122	GO:0042631: cellular response to water deprivation	1.81E-02
123	GO:0042335: cuticle development	1.81E-02
124	GO:0080022: primary root development	1.81E-02
125	GO:0034220: ion transmembrane transport	1.81E-02
126	GO:0008152: metabolic process	1.85E-02
127	GO:0009741: response to brassinosteroid	1.91E-02
128	GO:0006520: cellular amino acid metabolic process	1.91E-02
129	GO:0006662: glycerol ether metabolic process	1.91E-02
130	GO:0007059: chromosome segregation	2.01E-02
131	GO:0015986: ATP synthesis coupled proton transport	2.01E-02
132	GO:0009791: post-embryonic development	2.11E-02
133	GO:0019252: starch biosynthetic process	2.11E-02
134	GO:0008654: phospholipid biosynthetic process	2.11E-02
135	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.22E-02
136	GO:0007264: small GTPase mediated signal transduction	2.32E-02
137	GO:0010583: response to cyclopentenone	2.32E-02
138	GO:0019761: glucosinolate biosynthetic process	2.32E-02
139	GO:0048235: pollen sperm cell differentiation	2.32E-02
140	GO:0045490: pectin catabolic process	2.35E-02
141	GO:0007623: circadian rhythm	2.35E-02
142	GO:1901657: glycosyl compound metabolic process	2.43E-02
143	GO:0009414: response to water deprivation	2.49E-02
144	GO:0016125: sterol metabolic process	2.54E-02
145	GO:0051607: defense response to virus	2.77E-02
146	GO:0009911: positive regulation of flower development	2.88E-02
147	GO:0030154: cell differentiation	2.93E-02
148	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.00E-02
149	GO:0042128: nitrate assimilation	3.12E-02
150	GO:0009817: defense response to fungus, incompatible interaction	3.48E-02
151	GO:0030244: cellulose biosynthetic process	3.48E-02
152	GO:0018298: protein-chromophore linkage	3.48E-02
153	GO:0055114: oxidation-reduction process	3.51E-02
154	GO:0048767: root hair elongation	3.61E-02
155	GO:0009832: plant-type cell wall biogenesis	3.61E-02
156	GO:0009658: chloroplast organization	3.63E-02
157	GO:0009407: toxin catabolic process	3.73E-02
158	GO:0051301: cell division	3.73E-02
159	GO:0009409: response to cold	4.01E-02
160	GO:0007049: cell cycle	4.05E-02
161	GO:0009637: response to blue light	4.12E-02
162	GO:0009867: jasmonic acid mediated signaling pathway	4.12E-02
163	GO:0016051: carbohydrate biosynthetic process	4.12E-02
164	GO:0034599: cellular response to oxidative stress	4.25E-02
165	GO:0006839: mitochondrial transport	4.52E-02
166	GO:0006631: fatty acid metabolic process	4.66E-02
167	GO:0042542: response to hydrogen peroxide	4.79E-02
168	GO:0009926: auxin polar transport	4.93E-02
169	GO:0009744: response to sucrose	4.93E-02
170	GO:0051707: response to other organism	4.93E-02
171	GO:0008283: cell proliferation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:1990055: phenylacetaldehyde synthase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
7	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
8	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
9	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
10	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
11	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
12	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.97E-05
14	GO:0016787: hydrolase activity	8.50E-05
15	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.17E-04
16	GO:0044715: 8-oxo-dGDP phosphatase activity	2.25E-04
17	GO:0004837: tyrosine decarboxylase activity	2.25E-04
18	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.25E-04
19	GO:0004013: adenosylhomocysteinase activity	2.25E-04
20	GO:0010313: phytochrome binding	2.25E-04
21	GO:0004575: sucrose alpha-glucosidase activity	3.51E-04
22	GO:0052689: carboxylic ester hydrolase activity	4.99E-04
23	GO:0004618: phosphoglycerate kinase activity	5.00E-04
24	GO:0010297: heteropolysaccharide binding	5.00E-04
25	GO:0004047: aminomethyltransferase activity	5.00E-04
26	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	5.00E-04
27	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.00E-04
28	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	5.00E-04
29	GO:0000064: L-ornithine transmembrane transporter activity	5.00E-04
30	GO:0004512: inositol-3-phosphate synthase activity	5.00E-04
31	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	5.00E-04
32	GO:0071917: triose-phosphate transmembrane transporter activity	8.13E-04
33	GO:0005457: GDP-fucose transmembrane transporter activity	8.13E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	8.13E-04
35	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	8.13E-04
36	GO:0016165: linoleate 13S-lipoxygenase activity	8.13E-04
37	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.13E-04
38	GO:0016757: transferase activity, transferring glycosyl groups	1.13E-03
39	GO:0035529: NADH pyrophosphatase activity	1.16E-03
40	GO:0048027: mRNA 5'-UTR binding	1.16E-03
41	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	1.16E-03
42	GO:0005460: UDP-glucose transmembrane transporter activity	1.16E-03
43	GO:0015120: phosphoglycerate transmembrane transporter activity	1.54E-03
44	GO:0019905: syntaxin binding	1.54E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.54E-03
46	GO:0008453: alanine-glyoxylate transaminase activity	1.54E-03
47	GO:0098599: palmitoyl hydrolase activity	1.54E-03
48	GO:0045430: chalcone isomerase activity	1.54E-03
49	GO:0046527: glucosyltransferase activity	1.54E-03
50	GO:0052793: pectin acetylesterase activity	1.54E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	1.54E-03
52	GO:0004301: epoxide hydrolase activity	1.54E-03
53	GO:0004356: glutamate-ammonia ligase activity	1.97E-03
54	GO:0008725: DNA-3-methyladenine glycosylase activity	1.97E-03
55	GO:0005459: UDP-galactose transmembrane transporter activity	1.97E-03
56	GO:0045547: dehydrodolichyl diphosphate synthase activity	1.97E-03
57	GO:0002094: polyprenyltransferase activity	1.97E-03
58	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.97E-03
59	GO:0017137: Rab GTPase binding	1.97E-03
60	GO:0019901: protein kinase binding	2.15E-03
61	GO:0048038: quinone binding	2.30E-03
62	GO:0080030: methyl indole-3-acetate esterase activity	2.43E-03
63	GO:0008474: palmitoyl-(protein) hydrolase activity	2.43E-03
64	GO:0008429: phosphatidylethanolamine binding	2.43E-03
65	GO:0000210: NAD+ diphosphatase activity	2.43E-03
66	GO:0102229: amylopectin maltohydrolase activity	2.43E-03
67	GO:0042578: phosphoric ester hydrolase activity	2.43E-03
68	GO:0016759: cellulose synthase activity	2.78E-03
69	GO:0051753: mannan synthase activity	2.91E-03
70	GO:0016161: beta-amylase activity	2.91E-03
71	GO:0016413: O-acetyltransferase activity	3.13E-03
72	GO:0016621: cinnamoyl-CoA reductase activity	3.43E-03
73	GO:0043295: glutathione binding	3.43E-03
74	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.98E-03
75	GO:0004564: beta-fructofuranosidase activity	3.98E-03
76	GO:0015297: antiporter activity	4.09E-03
77	GO:0004222: metalloendopeptidase activity	4.75E-03
78	GO:0008047: enzyme activator activity	6.45E-03
79	GO:0047372: acylglycerol lipase activity	7.13E-03
80	GO:0004860: protein kinase inhibitor activity	7.13E-03
81	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.13E-03
82	GO:0003824: catalytic activity	9.17E-03
83	GO:0008083: growth factor activity	9.33E-03
84	GO:0045330: aspartyl esterase activity	1.05E-02
85	GO:0031409: pigment binding	1.09E-02
86	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.09E-02
87	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.09E-02
88	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.09E-02
89	GO:0001046: core promoter sequence-specific DNA binding	1.17E-02
90	GO:0016740: transferase activity	1.21E-02
91	GO:0030599: pectinesterase activity	1.28E-02
92	GO:0022857: transmembrane transporter activity	1.28E-02
93	GO:0004176: ATP-dependent peptidase activity	1.34E-02
94	GO:0016760: cellulose synthase (UDP-forming) activity	1.53E-02
95	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.62E-02
96	GO:0047134: protein-disulfide reductase activity	1.71E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	2.01E-02
98	GO:0005355: glucose transmembrane transporter activity	2.01E-02
99	GO:0050662: coenzyme binding	2.01E-02
100	GO:0004872: receptor activity	2.11E-02
101	GO:0004518: nuclease activity	2.32E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.43E-02
103	GO:0008194: UDP-glycosyltransferase activity	2.63E-02
104	GO:0008483: transaminase activity	2.65E-02
105	GO:0008237: metallopeptidase activity	2.65E-02
106	GO:0005200: structural constituent of cytoskeleton	2.65E-02
107	GO:0015250: water channel activity	2.88E-02
108	GO:0005215: transporter activity	2.99E-02
109	GO:0016168: chlorophyll binding	3.00E-02
110	GO:0102483: scopolin beta-glucosidase activity	3.24E-02
111	GO:0005096: GTPase activator activity	3.61E-02
112	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.73E-02
113	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.86E-02
114	GO:0050897: cobalt ion binding	3.86E-02
115	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.12E-02
116	GO:0050660: flavin adenine dinucleotide binding	4.19E-02
117	GO:0003993: acid phosphatase activity	4.25E-02
118	GO:0008422: beta-glucosidase activity	4.39E-02
119	GO:0004497: monooxygenase activity	4.49E-02
120	GO:0050661: NADP binding	4.52E-02
121	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.71E-02
122	GO:0004364: glutathione transferase activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	3.66E-07
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.84E-06
5	GO:0005775: vacuolar lumen	1.97E-05
6	GO:0005960: glycine cleavage complex	1.97E-05
7	GO:0009941: chloroplast envelope	9.78E-05
8	GO:0009535: chloroplast thylakoid membrane	9.94E-05
9	GO:0009570: chloroplast stroma	3.30E-04
10	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	5.00E-04
11	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.00E-04
12	GO:0000325: plant-type vacuole	6.23E-04
13	GO:0030095: chloroplast photosystem II	6.96E-04
14	GO:0009509: chromoplast	8.13E-04
15	GO:0009654: photosystem II oxygen evolving complex	1.05E-03
16	GO:0031225: anchored component of membrane	1.34E-03
17	GO:0019898: extrinsic component of membrane	2.15E-03
18	GO:0010168: ER body	2.43E-03
19	GO:0009543: chloroplast thylakoid lumen	2.88E-03
20	GO:0009579: thylakoid	3.11E-03
21	GO:0009534: chloroplast thylakoid	3.16E-03
22	GO:0009505: plant-type cell wall	3.52E-03
23	GO:0005773: vacuole	3.55E-03
24	GO:0048046: apoplast	3.80E-03
25	GO:0000139: Golgi membrane	4.10E-03
26	GO:0005779: integral component of peroxisomal membrane	4.56E-03
27	GO:0005576: extracellular region	4.57E-03
28	GO:0046658: anchored component of plasma membrane	6.20E-03
29	GO:0031902: late endosome membrane	6.49E-03
30	GO:0005765: lysosomal membrane	7.13E-03
31	GO:0048471: perinuclear region of cytoplasm	7.13E-03
32	GO:0005794: Golgi apparatus	7.56E-03
33	GO:0016020: membrane	8.12E-03
34	GO:0031012: extracellular matrix	8.57E-03
35	GO:0019013: viral nucleocapsid	8.57E-03
36	GO:0016021: integral component of membrane	8.65E-03
37	GO:0030076: light-harvesting complex	1.01E-02
38	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.01E-02
39	GO:0010287: plastoglobule	1.61E-02
40	GO:0009522: photosystem I	2.01E-02
41	GO:0009523: photosystem II	2.11E-02
42	GO:0071944: cell periphery	2.43E-02
43	GO:0010319: stromule	2.65E-02
44	GO:0005778: peroxisomal membrane	2.65E-02
45	GO:0005618: cell wall	3.22E-02
46	GO:0009536: plastid	3.48E-02
47	GO:0009707: chloroplast outer membrane	3.48E-02
48	GO:0005777: peroxisome	3.97E-02
49	GO:0005819: spindle	4.39E-02