Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
10GO:0006412: translation3.41E-17
11GO:0032544: plastid translation5.34E-16
12GO:0042254: ribosome biogenesis2.42E-10
13GO:0009773: photosynthetic electron transport in photosystem I4.12E-10
14GO:0009735: response to cytokinin9.51E-10
15GO:0015979: photosynthesis1.62E-09
16GO:0009658: chloroplast organization6.25E-07
17GO:0015976: carbon utilization1.02E-06
18GO:0010207: photosystem II assembly5.30E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process7.70E-06
20GO:0010027: thylakoid membrane organization9.77E-06
21GO:0006000: fructose metabolic process2.66E-05
22GO:0006518: peptide metabolic process2.66E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.79E-05
24GO:2000122: negative regulation of stomatal complex development1.02E-04
25GO:0006546: glycine catabolic process1.02E-04
26GO:0010037: response to carbon dioxide1.02E-04
27GO:0019253: reductive pentose-phosphate cycle1.35E-04
28GO:0006810: transport1.45E-04
29GO:0042742: defense response to bacterium1.45E-04
30GO:0009817: defense response to fungus, incompatible interaction2.21E-04
31GO:0042549: photosystem II stabilization2.25E-04
32GO:0010196: nonphotochemical quenching3.92E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.15E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process4.15E-04
35GO:0071277: cellular response to calcium ion4.15E-04
36GO:1904964: positive regulation of phytol biosynthetic process4.15E-04
37GO:0042371: vitamin K biosynthetic process4.15E-04
38GO:1902458: positive regulation of stomatal opening4.15E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway4.15E-04
40GO:0016117: carotenoid biosynthetic process4.50E-04
41GO:0000413: protein peptidyl-prolyl isomerization4.98E-04
42GO:0006002: fructose 6-phosphate metabolic process5.98E-04
43GO:0009657: plastid organization5.98E-04
44GO:0043039: tRNA aminoacylation8.99E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.99E-04
46GO:0006423: cysteinyl-tRNA aminoacylation8.99E-04
47GO:0006729: tetrahydrobiopterin biosynthetic process8.99E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process8.99E-04
49GO:2000123: positive regulation of stomatal complex development8.99E-04
50GO:0006415: translational termination1.13E-03
51GO:0015995: chlorophyll biosynthetic process1.40E-03
52GO:0006954: inflammatory response1.46E-03
53GO:0090391: granum assembly1.46E-03
54GO:0071492: cellular response to UV-A1.46E-03
55GO:0006696: ergosterol biosynthetic process1.46E-03
56GO:0090506: axillary shoot meristem initiation1.46E-03
57GO:0005986: sucrose biosynthetic process1.47E-03
58GO:0006094: gluconeogenesis1.47E-03
59GO:0055114: oxidation-reduction process1.56E-03
60GO:0010020: chloroplast fission1.65E-03
61GO:0006636: unsaturated fatty acid biosynthetic process2.06E-03
62GO:0043572: plastid fission2.11E-03
63GO:0007231: osmosensory signaling pathway2.11E-03
64GO:0006418: tRNA aminoacylation for protein translation2.53E-03
65GO:0061077: chaperone-mediated protein folding2.78E-03
66GO:0045454: cell redox homeostasis2.83E-03
67GO:0019464: glycine decarboxylation via glycine cleavage system2.84E-03
68GO:0009765: photosynthesis, light harvesting2.84E-03
69GO:0045727: positive regulation of translation2.84E-03
70GO:0033500: carbohydrate homeostasis2.84E-03
71GO:2000038: regulation of stomatal complex development2.84E-03
72GO:0071486: cellular response to high light intensity2.84E-03
73GO:0010375: stomatal complex patterning3.63E-03
74GO:0016120: carotene biosynthetic process3.63E-03
75GO:0006564: L-serine biosynthetic process3.63E-03
76GO:0010236: plastoquinone biosynthetic process3.63E-03
77GO:0045038: protein import into chloroplast thylakoid membrane3.63E-03
78GO:0031365: N-terminal protein amino acid modification3.63E-03
79GO:0006461: protein complex assembly3.63E-03
80GO:0016123: xanthophyll biosynthetic process3.63E-03
81GO:0006665: sphingolipid metabolic process3.63E-03
82GO:0042335: cuticle development4.23E-03
83GO:0016554: cytidine to uridine editing4.49E-03
84GO:0010190: cytochrome b6f complex assembly4.49E-03
85GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.49E-03
86GO:0009955: adaxial/abaxial pattern specification5.42E-03
87GO:0010067: procambium histogenesis5.42E-03
88GO:0042372: phylloquinone biosynthetic process5.42E-03
89GO:1901259: chloroplast rRNA processing5.42E-03
90GO:0010189: vitamin E biosynthetic process5.42E-03
91GO:0010019: chloroplast-nucleus signaling pathway5.42E-03
92GO:0010555: response to mannitol5.42E-03
93GO:0006400: tRNA modification6.41E-03
94GO:0007267: cell-cell signaling7.26E-03
95GO:0030091: protein repair7.45E-03
96GO:0009642: response to light intensity7.45E-03
97GO:0009704: de-etiolation7.45E-03
98GO:2000070: regulation of response to water deprivation7.45E-03
99GO:0015996: chlorophyll catabolic process8.55E-03
100GO:0007186: G-protein coupled receptor signaling pathway8.55E-03
101GO:0006526: arginine biosynthetic process8.55E-03
102GO:0017004: cytochrome complex assembly8.55E-03
103GO:0009409: response to cold8.95E-03
104GO:0010206: photosystem II repair9.71E-03
105GO:0090333: regulation of stomatal closure9.71E-03
106GO:0018298: protein-chromophore linkage1.07E-02
107GO:0010205: photoinhibition1.09E-02
108GO:0043067: regulation of programmed cell death1.09E-02
109GO:0006779: porphyrin-containing compound biosynthetic process1.09E-02
110GO:0042761: very long-chain fatty acid biosynthetic process1.09E-02
111GO:1900865: chloroplast RNA modification1.09E-02
112GO:0009790: embryo development1.11E-02
113GO:0009793: embryo development ending in seed dormancy1.13E-02
114GO:0006633: fatty acid biosynthetic process1.22E-02
115GO:0006782: protoporphyrinogen IX biosynthetic process1.22E-02
116GO:0043069: negative regulation of programmed cell death1.22E-02
117GO:0006949: syncytium formation1.22E-02
118GO:0010119: regulation of stomatal movement1.24E-02
119GO:0006869: lipid transport1.25E-02
120GO:0006816: calcium ion transport1.35E-02
121GO:0043085: positive regulation of catalytic activity1.35E-02
122GO:0018119: peptidyl-cysteine S-nitrosylation1.35E-02
123GO:0045490: pectin catabolic process1.38E-02
124GO:0034599: cellular response to oxidative stress1.42E-02
125GO:0045037: protein import into chloroplast stroma1.49E-02
126GO:0006006: glucose metabolic process1.63E-02
127GO:0009767: photosynthetic electron transport chain1.63E-02
128GO:0010143: cutin biosynthetic process1.77E-02
129GO:0010223: secondary shoot formation1.77E-02
130GO:0005985: sucrose metabolic process1.92E-02
131GO:0070588: calcium ion transmembrane transport1.92E-02
132GO:0010025: wax biosynthetic process2.08E-02
133GO:0000027: ribosomal large subunit assembly2.24E-02
134GO:0019344: cysteine biosynthetic process2.24E-02
135GO:0006364: rRNA processing2.37E-02
136GO:0009768: photosynthesis, light harvesting in photosystem I2.40E-02
137GO:0031408: oxylipin biosynthetic process2.57E-02
138GO:0030245: cellulose catabolic process2.74E-02
139GO:0016226: iron-sulfur cluster assembly2.74E-02
140GO:0080092: regulation of pollen tube growth2.74E-02
141GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.91E-02
142GO:0001944: vasculature development2.91E-02
143GO:0010091: trichome branching3.09E-02
144GO:0019722: calcium-mediated signaling3.09E-02
145GO:0010089: xylem development3.09E-02
146GO:0010087: phloem or xylem histogenesis3.46E-02
147GO:0006520: cellular amino acid metabolic process3.65E-02
148GO:0006662: glycerol ether metabolic process3.65E-02
149GO:0010197: polar nucleus fusion3.65E-02
150GO:0010182: sugar mediated signaling pathway3.65E-02
151GO:0006814: sodium ion transport3.85E-02
152GO:0019252: starch biosynthetic process4.04E-02
153GO:0002229: defense response to oomycetes4.24E-02
154GO:0000302: response to reactive oxygen species4.24E-02
155GO:0007264: small GTPase mediated signal transduction4.44E-02
156GO:1901657: glycosyl compound metabolic process4.65E-02
157GO:0042744: hydrogen peroxide catabolic process4.78E-02
158GO:0019760: glucosinolate metabolic process4.86E-02
159GO:0009828: plant-type cell wall loosening4.86E-02
160GO:0055085: transmembrane transport4.90E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
5GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
17GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
18GO:0019843: rRNA binding2.00E-21
19GO:0003735: structural constituent of ribosome8.99E-20
20GO:0051920: peroxiredoxin activity7.13E-08
21GO:0016209: antioxidant activity2.52E-07
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.22E-07
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.70E-06
24GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.66E-05
25GO:0016149: translation release factor activity, codon specific5.79E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.02E-04
27GO:0004089: carbonate dehydratase activity1.13E-04
28GO:0005528: FK506 binding2.18E-04
29GO:0004222: metalloendopeptidase activity2.60E-04
30GO:0004601: peroxidase activity3.18E-04
31GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.15E-04
32GO:0080132: fatty acid alpha-hydroxylase activity4.15E-04
33GO:0004831: tyrosine-tRNA ligase activity4.15E-04
34GO:0051996: squalene synthase activity4.15E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.15E-04
36GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.15E-04
37GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.15E-04
38GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.98E-04
39GO:0003747: translation release factor activity7.15E-04
40GO:0004817: cysteine-tRNA ligase activity8.99E-04
41GO:0016630: protochlorophyllide reductase activity8.99E-04
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.99E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.99E-04
44GO:0008967: phosphoglycolate phosphatase activity8.99E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.99E-04
46GO:0042389: omega-3 fatty acid desaturase activity8.99E-04
47GO:0004617: phosphoglycerate dehydrogenase activity8.99E-04
48GO:0004047: aminomethyltransferase activity8.99E-04
49GO:0016168: chlorophyll binding1.22E-03
50GO:0050734: hydroxycinnamoyltransferase activity1.46E-03
51GO:0002161: aminoacyl-tRNA editing activity1.46E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.46E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.46E-03
54GO:0008266: poly(U) RNA binding1.65E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity2.11E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.11E-03
57GO:0043023: ribosomal large subunit binding2.11E-03
58GO:0008097: 5S rRNA binding2.11E-03
59GO:0008508: bile acid:sodium symporter activity2.11E-03
60GO:0043495: protein anchor2.84E-03
61GO:0004659: prenyltransferase activity2.84E-03
62GO:0030570: pectate lyase activity3.32E-03
63GO:0022891: substrate-specific transmembrane transporter activity3.32E-03
64GO:0009922: fatty acid elongase activity3.63E-03
65GO:0003959: NADPH dehydrogenase activity3.63E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor3.63E-03
67GO:0004040: amidase activity3.63E-03
68GO:0051287: NAD binding3.81E-03
69GO:0004812: aminoacyl-tRNA ligase activity3.91E-03
70GO:0004130: cytochrome-c peroxidase activity4.49E-03
71GO:0016208: AMP binding4.49E-03
72GO:0042578: phosphoric ester hydrolase activity4.49E-03
73GO:0016688: L-ascorbate peroxidase activity4.49E-03
74GO:0008200: ion channel inhibitor activity4.49E-03
75GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.42E-03
76GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.42E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.42E-03
78GO:0048038: quinone binding5.63E-03
79GO:0008235: metalloexopeptidase activity6.41E-03
80GO:0019899: enzyme binding6.41E-03
81GO:0008237: metallopeptidase activity7.26E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity7.45E-03
83GO:0004033: aldo-keto reductase (NADP) activity7.45E-03
84GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.71E-03
85GO:0008047: enzyme activator activity1.22E-02
86GO:0005089: Rho guanyl-nucleotide exchange factor activity1.35E-02
87GO:0004177: aminopeptidase activity1.35E-02
88GO:0000049: tRNA binding1.49E-02
89GO:0045551: cinnamyl-alcohol dehydrogenase activity1.49E-02
90GO:0005262: calcium channel activity1.63E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.90E-02
92GO:0031409: pigment binding2.08E-02
93GO:0004857: enzyme inhibitor activity2.24E-02
94GO:0051536: iron-sulfur cluster binding2.24E-02
95GO:0043424: protein histidine kinase binding2.40E-02
96GO:0008289: lipid binding2.44E-02
97GO:0004176: ATP-dependent peptidase activity2.57E-02
98GO:0033612: receptor serine/threonine kinase binding2.57E-02
99GO:0008810: cellulase activity2.91E-02
100GO:0030599: pectinesterase activity3.17E-02
101GO:0005102: receptor binding3.28E-02
102GO:0047134: protein-disulfide reductase activity3.28E-02
103GO:0052689: carboxylic ester hydrolase activity3.55E-02
104GO:0008080: N-acetyltransferase activity3.65E-02
105GO:0050662: coenzyme binding3.85E-02
106GO:0004791: thioredoxin-disulfide reductase activity3.85E-02
107GO:0019901: protein kinase binding4.04E-02
108GO:0016762: xyloglucan:xyloglucosyl transferase activity4.24E-02
109GO:0016740: transferase activity4.63E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.65E-02
111GO:0016759: cellulose synthase activity4.86E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast1.16E-84
3GO:0009570: chloroplast stroma7.17E-51
4GO:0009535: chloroplast thylakoid membrane1.86E-43
5GO:0009941: chloroplast envelope1.94E-43
6GO:0009579: thylakoid1.04E-29
7GO:0009534: chloroplast thylakoid1.33E-21
8GO:0005840: ribosome1.01E-18
9GO:0009543: chloroplast thylakoid lumen9.83E-17
10GO:0048046: apoplast1.29E-13
11GO:0031977: thylakoid lumen2.22E-13
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.39E-11
13GO:0009654: photosystem II oxygen evolving complex3.98E-07
14GO:0000311: plastid large ribosomal subunit2.96E-06
15GO:0030095: chloroplast photosystem II5.30E-06
16GO:0010319: stromule7.25E-06
17GO:0031969: chloroplast membrane1.43E-05
18GO:0015934: large ribosomal subunit2.70E-05
19GO:0009523: photosystem II6.16E-05
20GO:0019898: extrinsic component of membrane6.16E-05
21GO:0009536: plastid7.49E-05
22GO:0009706: chloroplast inner membrane2.37E-04
23GO:0042651: thylakoid membrane2.50E-04
24GO:0009533: chloroplast stromal thylakoid3.92E-04
25GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.15E-04
26GO:0009515: granal stacked thylakoid4.15E-04
27GO:0009923: fatty acid elongase complex4.15E-04
28GO:0009344: nitrite reductase complex [NAD(P)H]4.15E-04
29GO:0009547: plastid ribosome4.15E-04
30GO:0042170: plastid membrane8.99E-04
31GO:0009528: plastid inner membrane1.46E-03
32GO:0010287: plastoglobule1.71E-03
33GO:0005960: glycine cleavage complex2.11E-03
34GO:0015935: small ribosomal subunit2.78E-03
35GO:0009532: plastid stroma2.78E-03
36GO:0009527: plastid outer membrane2.84E-03
37GO:0005618: cell wall3.10E-03
38GO:0022626: cytosolic ribosome3.10E-03
39GO:0046658: anchored component of plasma membrane4.69E-03
40GO:0016020: membrane5.94E-03
41GO:0009505: plant-type cell wall7.58E-03
42GO:0009539: photosystem II reaction center8.55E-03
43GO:0005763: mitochondrial small ribosomal subunit9.71E-03
44GO:0016324: apical plasma membrane1.22E-02
45GO:0031012: extracellular matrix1.63E-02
46GO:0000312: plastid small ribosomal subunit1.77E-02
47GO:0030076: light-harvesting complex1.92E-02
48GO:0005875: microtubule associated complex2.08E-02
49GO:0031225: anchored component of membrane2.39E-02
50GO:0022625: cytosolic large ribosomal subunit3.34E-02
51GO:0009522: photosystem I3.85E-02
Gene type



Gene DE type