GO Enrichment Analysis of Co-expressed Genes with
AT3G47560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 5.32E-05 |
| 8 | GO:0071482: cellular response to light stimulus | 7.06E-05 |
| 9 | GO:0006427: histidyl-tRNA aminoacylation | 9.88E-05 |
| 10 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 9.88E-05 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.88E-05 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 9.88E-05 |
| 13 | GO:0042371: vitamin K biosynthetic process | 9.88E-05 |
| 14 | GO:0006094: gluconeogenesis | 1.98E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.32E-04 |
| 16 | GO:0019563: glycerol catabolic process | 3.86E-04 |
| 17 | GO:0006518: peptide metabolic process | 3.86E-04 |
| 18 | GO:0032504: multicellular organism reproduction | 3.86E-04 |
| 19 | GO:0009152: purine ribonucleotide biosynthetic process | 5.54E-04 |
| 20 | GO:0046653: tetrahydrofolate metabolic process | 5.54E-04 |
| 21 | GO:0009800: cinnamic acid biosynthetic process | 5.54E-04 |
| 22 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.54E-04 |
| 23 | GO:2001141: regulation of RNA biosynthetic process | 5.54E-04 |
| 24 | GO:0042335: cuticle development | 5.80E-04 |
| 25 | GO:0000413: protein peptidyl-prolyl isomerization | 5.80E-04 |
| 26 | GO:0015976: carbon utilization | 7.37E-04 |
| 27 | GO:2000122: negative regulation of stomatal complex development | 7.37E-04 |
| 28 | GO:0010037: response to carbon dioxide | 7.37E-04 |
| 29 | GO:0080143: regulation of amino acid export | 9.32E-04 |
| 30 | GO:0031365: N-terminal protein amino acid modification | 9.32E-04 |
| 31 | GO:0042549: photosystem II stabilization | 1.14E-03 |
| 32 | GO:0006559: L-phenylalanine catabolic process | 1.14E-03 |
| 33 | GO:0032973: amino acid export | 1.14E-03 |
| 34 | GO:0010190: cytochrome b6f complex assembly | 1.14E-03 |
| 35 | GO:0006596: polyamine biosynthetic process | 1.14E-03 |
| 36 | GO:0006014: D-ribose metabolic process | 1.14E-03 |
| 37 | GO:0048759: xylem vessel member cell differentiation | 1.14E-03 |
| 38 | GO:0006751: glutathione catabolic process | 1.14E-03 |
| 39 | GO:0042372: phylloquinone biosynthetic process | 1.36E-03 |
| 40 | GO:0043090: amino acid import | 1.59E-03 |
| 41 | GO:0006865: amino acid transport | 1.69E-03 |
| 42 | GO:0009658: chloroplast organization | 1.77E-03 |
| 43 | GO:0006508: proteolysis | 2.09E-03 |
| 44 | GO:0009932: cell tip growth | 2.10E-03 |
| 45 | GO:0009657: plastid organization | 2.10E-03 |
| 46 | GO:0032544: plastid translation | 2.10E-03 |
| 47 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.37E-03 |
| 48 | GO:0006098: pentose-phosphate shunt | 2.37E-03 |
| 49 | GO:0080144: amino acid homeostasis | 2.37E-03 |
| 50 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.65E-03 |
| 51 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.65E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.95E-03 |
| 53 | GO:0006535: cysteine biosynthetic process from serine | 2.95E-03 |
| 54 | GO:0048829: root cap development | 2.95E-03 |
| 55 | GO:0000038: very long-chain fatty acid metabolic process | 3.25E-03 |
| 56 | GO:0019684: photosynthesis, light reaction | 3.25E-03 |
| 57 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.25E-03 |
| 58 | GO:0006352: DNA-templated transcription, initiation | 3.25E-03 |
| 59 | GO:0006096: glycolytic process | 3.59E-03 |
| 60 | GO:0009725: response to hormone | 3.89E-03 |
| 61 | GO:0006006: glucose metabolic process | 3.89E-03 |
| 62 | GO:0010143: cutin biosynthetic process | 4.22E-03 |
| 63 | GO:0010020: chloroplast fission | 4.22E-03 |
| 64 | GO:0019253: reductive pentose-phosphate cycle | 4.22E-03 |
| 65 | GO:0010207: photosystem II assembly | 4.22E-03 |
| 66 | GO:0019762: glucosinolate catabolic process | 4.92E-03 |
| 67 | GO:0010025: wax biosynthetic process | 4.92E-03 |
| 68 | GO:0006833: water transport | 4.92E-03 |
| 69 | GO:0019344: cysteine biosynthetic process | 5.28E-03 |
| 70 | GO:0016575: histone deacetylation | 5.65E-03 |
| 71 | GO:0003333: amino acid transmembrane transport | 6.03E-03 |
| 72 | GO:0006633: fatty acid biosynthetic process | 6.76E-03 |
| 73 | GO:0006284: base-excision repair | 7.23E-03 |
| 74 | GO:0080022: primary root development | 8.07E-03 |
| 75 | GO:0034220: ion transmembrane transport | 8.07E-03 |
| 76 | GO:0010087: phloem or xylem histogenesis | 8.07E-03 |
| 77 | GO:0048868: pollen tube development | 8.50E-03 |
| 78 | GO:0008380: RNA splicing | 8.86E-03 |
| 79 | GO:0019252: starch biosynthetic process | 9.39E-03 |
| 80 | GO:0071281: cellular response to iron ion | 1.08E-02 |
| 81 | GO:0001666: response to hypoxia | 1.28E-02 |
| 82 | GO:0010027: thylakoid membrane organization | 1.28E-02 |
| 83 | GO:0015995: chlorophyll biosynthetic process | 1.43E-02 |
| 84 | GO:0016311: dephosphorylation | 1.49E-02 |
| 85 | GO:0018298: protein-chromophore linkage | 1.54E-02 |
| 86 | GO:0010119: regulation of stomatal movement | 1.71E-02 |
| 87 | GO:0009853: photorespiration | 1.82E-02 |
| 88 | GO:0016051: carbohydrate biosynthetic process | 1.82E-02 |
| 89 | GO:0009637: response to blue light | 1.82E-02 |
| 90 | GO:0006412: translation | 1.83E-02 |
| 91 | GO:0030001: metal ion transport | 2.00E-02 |
| 92 | GO:0010114: response to red light | 2.18E-02 |
| 93 | GO:0009926: auxin polar transport | 2.18E-02 |
| 94 | GO:0006397: mRNA processing | 2.21E-02 |
| 95 | GO:0042538: hyperosmotic salinity response | 2.57E-02 |
| 96 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.77E-02 |
| 97 | GO:0009735: response to cytokinin | 3.43E-02 |
| 98 | GO:0009416: response to light stimulus | 3.75E-02 |
| 99 | GO:0009058: biosynthetic process | 4.22E-02 |
| 100 | GO:0055085: transmembrane transport | 4.74E-02 |
| 101 | GO:0006457: protein folding | 4.83E-02 |
| 102 | GO:0006413: translational initiation | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 3 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 4 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 5 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 8 | GO:0004045: aminoacyl-tRNA hydrolase activity | 8.78E-06 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.65E-05 |
| 10 | GO:0004807: triose-phosphate isomerase activity | 9.88E-05 |
| 11 | GO:0004821: histidine-tRNA ligase activity | 9.88E-05 |
| 12 | GO:0016768: spermine synthase activity | 9.88E-05 |
| 13 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.32E-04 |
| 14 | GO:0050017: L-3-cyanoalanine synthase activity | 2.32E-04 |
| 15 | GO:0003839: gamma-glutamylcyclotransferase activity | 2.32E-04 |
| 16 | GO:0005528: FK506 binding | 3.16E-04 |
| 17 | GO:0050734: hydroxycinnamoyltransferase activity | 3.86E-04 |
| 18 | GO:0045548: phenylalanine ammonia-lyase activity | 3.86E-04 |
| 19 | GO:0030267: glyoxylate reductase (NADP) activity | 3.86E-04 |
| 20 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.86E-04 |
| 21 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.86E-04 |
| 22 | GO:0001872: (1->3)-beta-D-glucan binding | 5.54E-04 |
| 23 | GO:0048487: beta-tubulin binding | 5.54E-04 |
| 24 | GO:0019843: rRNA binding | 6.91E-04 |
| 25 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 7.37E-04 |
| 26 | GO:0016987: sigma factor activity | 7.37E-04 |
| 27 | GO:0010328: auxin influx transmembrane transporter activity | 7.37E-04 |
| 28 | GO:0043495: protein anchor | 7.37E-04 |
| 29 | GO:0001053: plastid sigma factor activity | 7.37E-04 |
| 30 | GO:0008725: DNA-3-methyladenine glycosylase activity | 9.32E-04 |
| 31 | GO:0009922: fatty acid elongase activity | 9.32E-04 |
| 32 | GO:0004332: fructose-bisphosphate aldolase activity | 1.14E-03 |
| 33 | GO:0016208: AMP binding | 1.14E-03 |
| 34 | GO:0004124: cysteine synthase activity | 1.36E-03 |
| 35 | GO:0004747: ribokinase activity | 1.36E-03 |
| 36 | GO:0051753: mannan synthase activity | 1.36E-03 |
| 37 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.36E-03 |
| 38 | GO:0008235: metalloexopeptidase activity | 1.59E-03 |
| 39 | GO:0019899: enzyme binding | 1.59E-03 |
| 40 | GO:0008865: fructokinase activity | 1.84E-03 |
| 41 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.10E-03 |
| 42 | GO:0004177: aminopeptidase activity | 3.25E-03 |
| 43 | GO:0015171: amino acid transmembrane transporter activity | 3.36E-03 |
| 44 | GO:0004089: carbonate dehydratase activity | 3.89E-03 |
| 45 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.92E-03 |
| 46 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.92E-03 |
| 47 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.92E-03 |
| 48 | GO:0004407: histone deacetylase activity | 5.28E-03 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 6.82E-03 |
| 50 | GO:0001085: RNA polymerase II transcription factor binding | 8.50E-03 |
| 51 | GO:0042802: identical protein binding | 9.44E-03 |
| 52 | GO:0016740: transferase activity | 1.01E-02 |
| 53 | GO:0016788: hydrolase activity, acting on ester bonds | 1.17E-02 |
| 54 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.18E-02 |
| 55 | GO:0015250: water channel activity | 1.28E-02 |
| 56 | GO:0016168: chlorophyll binding | 1.33E-02 |
| 57 | GO:0102483: scopolin beta-glucosidase activity | 1.43E-02 |
| 58 | GO:0030247: polysaccharide binding | 1.43E-02 |
| 59 | GO:0004721: phosphoprotein phosphatase activity | 1.43E-02 |
| 60 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.49E-02 |
| 61 | GO:0008236: serine-type peptidase activity | 1.49E-02 |
| 62 | GO:0052689: carboxylic ester hydrolase activity | 1.58E-02 |
| 63 | GO:0004222: metalloendopeptidase activity | 1.65E-02 |
| 64 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.71E-02 |
| 65 | GO:0005509: calcium ion binding | 1.74E-02 |
| 66 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.88E-02 |
| 67 | GO:0003993: acid phosphatase activity | 1.88E-02 |
| 68 | GO:0008422: beta-glucosidase activity | 1.94E-02 |
| 69 | GO:0050661: NADP binding | 2.00E-02 |
| 70 | GO:0003924: GTPase activity | 2.11E-02 |
| 71 | GO:0004185: serine-type carboxypeptidase activity | 2.18E-02 |
| 72 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.31E-02 |
| 73 | GO:0043621: protein self-association | 2.31E-02 |
| 74 | GO:0005198: structural molecule activity | 2.37E-02 |
| 75 | GO:0015293: symporter activity | 2.37E-02 |
| 76 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.70E-02 |
| 77 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.11E-02 |
| 78 | GO:0016874: ligase activity | 3.32E-02 |
| 79 | GO:0030170: pyridoxal phosphate binding | 4.38E-02 |
| 80 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.46E-02 |
| 81 | GO:0003735: structural constituent of ribosome | 4.52E-02 |
| 82 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.99E-18 |
| 2 | GO:0009543: chloroplast thylakoid lumen | 3.62E-14 |
| 3 | GO:0031977: thylakoid lumen | 1.53E-12 |
| 4 | GO:0009579: thylakoid | 7.73E-11 |
| 5 | GO:0009570: chloroplast stroma | 3.47E-10 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 8.00E-08 |
| 7 | GO:0009654: photosystem II oxygen evolving complex | 1.11E-05 |
| 8 | GO:0009941: chloroplast envelope | 1.97E-05 |
| 9 | GO:0019898: extrinsic component of membrane | 3.77E-05 |
| 10 | GO:0042651: thylakoid membrane | 3.49E-04 |
| 11 | GO:0030529: intracellular ribonucleoprotein complex | 1.09E-03 |
| 12 | GO:0046658: anchored component of plasma membrane | 1.45E-03 |
| 13 | GO:0009534: chloroplast thylakoid | 2.08E-03 |
| 14 | GO:0030095: chloroplast photosystem II | 4.22E-03 |
| 15 | GO:0000312: plastid small ribosomal subunit | 4.22E-03 |
| 16 | GO:0005840: ribosome | 4.89E-03 |
| 17 | GO:0009532: plastid stroma | 6.03E-03 |
| 18 | GO:0009523: photosystem II | 9.39E-03 |
| 19 | GO:0005778: peroxisomal membrane | 1.18E-02 |
| 20 | GO:0031225: anchored component of membrane | 1.38E-02 |
| 21 | GO:0005667: transcription factor complex | 1.38E-02 |
| 22 | GO:0015934: large ribosomal subunit | 1.71E-02 |
| 23 | GO:0005618: cell wall | 3.58E-02 |
| 24 | GO:0005777: peroxisome | 4.29E-02 |