co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070584: mitochondrion morphogenesis	0.00E+00
2	GO:0009877: nodulation	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0030644: cellular chloride ion homeostasis	0.00E+00
6	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
7	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-22
9	GO:0018298: protein-chromophore linkage	1.62E-14
10	GO:0015979: photosynthesis	9.12E-14
11	GO:0009644: response to high light intensity	8.14E-10
12	GO:0009645: response to low light intensity stimulus	3.15E-09
13	GO:0010218: response to far red light	7.58E-09
14	GO:0010114: response to red light	2.75E-08
15	GO:0009416: response to light stimulus	7.67E-08
16	GO:0009637: response to blue light	5.12E-07
17	GO:0009409: response to cold	5.39E-07
18	GO:0009769: photosynthesis, light harvesting in photosystem II	6.60E-07
19	GO:0007623: circadian rhythm	2.16E-05
20	GO:0006351: transcription, DNA-templated	6.55E-05
21	GO:0010196: nonphotochemical quenching	6.70E-05
22	GO:0006355: regulation of transcription, DNA-templated	8.26E-05
23	GO:0080167: response to karrikin	9.36E-05
24	GO:0015812: gamma-aminobutyric acid transport	1.31E-04
25	GO:0032958: inositol phosphate biosynthetic process	1.31E-04
26	GO:0009970: cellular response to sulfate starvation	1.92E-04
27	GO:0006883: cellular sodium ion homeostasis	3.03E-04
28	GO:0051170: nuclear import	3.03E-04
29	GO:1902884: positive regulation of response to oxidative stress	3.03E-04
30	GO:0042542: response to hydrogen peroxide	3.53E-04
31	GO:1902448: positive regulation of shade avoidance	4.99E-04
32	GO:0006598: polyamine catabolic process	4.99E-04
33	GO:1901562: response to paraquat	4.99E-04
34	GO:0048511: rhythmic process	5.61E-04
35	GO:0010017: red or far-red light signaling pathway	6.13E-04
36	GO:0006020: inositol metabolic process	7.14E-04
37	GO:0010601: positive regulation of auxin biosynthetic process	7.14E-04
38	GO:0044211: CTP salvage	7.14E-04
39	GO:0031936: negative regulation of chromatin silencing	7.14E-04
40	GO:0009765: photosynthesis, light harvesting	9.47E-04
41	GO:2000306: positive regulation of photomorphogenesis	9.47E-04
42	GO:0010600: regulation of auxin biosynthetic process	9.47E-04
43	GO:0044206: UMP salvage	9.47E-04
44	GO:1901002: positive regulation of response to salt stress	9.47E-04
45	GO:0030104: water homeostasis	9.47E-04
46	GO:0009755: hormone-mediated signaling pathway	9.47E-04
47	GO:0016123: xanthophyll biosynthetic process	1.20E-03
48	GO:0010438: cellular response to sulfur starvation	1.20E-03
49	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.20E-03
50	GO:0043097: pyrimidine nucleoside salvage	1.20E-03
51	GO:0045962: positive regulation of development, heterochronic	1.47E-03
52	GO:0006206: pyrimidine nucleobase metabolic process	1.47E-03
53	GO:0009635: response to herbicide	1.47E-03
54	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.67E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.76E-03
56	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
57	GO:0031930: mitochondria-nucleus signaling pathway	1.76E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.76E-03
59	GO:0015995: chlorophyll biosynthetic process	1.85E-03
60	GO:0009414: response to water deprivation	1.97E-03
61	GO:0010161: red light signaling pathway	2.06E-03
62	GO:1900056: negative regulation of leaf senescence	2.06E-03
63	GO:0048437: floral organ development	2.06E-03
64	GO:0080111: DNA demethylation	2.06E-03
65	GO:0000160: phosphorelay signal transduction system	2.15E-03
66	GO:0009737: response to abscisic acid	2.22E-03
67	GO:0010928: regulation of auxin mediated signaling pathway	2.39E-03
68	GO:0009819: drought recovery	2.39E-03
69	GO:0042255: ribosome assembly	2.39E-03
70	GO:0010439: regulation of glucosinolate biosynthetic process	2.39E-03
71	GO:0010078: maintenance of root meristem identity	2.39E-03
72	GO:0009704: de-etiolation	2.39E-03
73	GO:2000070: regulation of response to water deprivation	2.39E-03
74	GO:0009735: response to cytokinin	2.47E-03
75	GO:0010099: regulation of photomorphogenesis	2.73E-03
76	GO:0015996: chlorophyll catabolic process	2.73E-03
77	GO:0009827: plant-type cell wall modification	2.73E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	2.73E-03
79	GO:0009658: chloroplast organization	2.90E-03
80	GO:0090333: regulation of stomatal closure	3.08E-03
81	GO:0009640: photomorphogenesis	3.32E-03
82	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.46E-03
83	GO:0010380: regulation of chlorophyll biosynthetic process	3.46E-03
84	GO:0008643: carbohydrate transport	3.59E-03
85	GO:0009641: shade avoidance	3.84E-03
86	GO:0010162: seed dormancy process	3.84E-03
87	GO:0006995: cellular response to nitrogen starvation	3.84E-03
88	GO:0055062: phosphate ion homeostasis	3.84E-03
89	GO:0006535: cysteine biosynthetic process from serine	3.84E-03
90	GO:0009688: abscisic acid biosynthetic process	3.84E-03
91	GO:0042538: hyperosmotic salinity response	4.17E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	4.24E-03
93	GO:0009682: induced systemic resistance	4.24E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	4.24E-03
95	GO:0009585: red, far-red light phototransduction	4.47E-03
96	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.65E-03
97	GO:0018107: peptidyl-threonine phosphorylation	5.08E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	5.08E-03
99	GO:0009767: photosynthetic electron transport chain	5.08E-03
100	GO:0050826: response to freezing	5.08E-03
101	GO:0009266: response to temperature stimulus	5.52E-03
102	GO:0010207: photosystem II assembly	5.52E-03
103	GO:0090351: seedling development	5.97E-03
104	GO:0009408: response to heat	6.24E-03
105	GO:0019344: cysteine biosynthetic process	6.91E-03
106	GO:0006874: cellular calcium ion homeostasis	7.40E-03
107	GO:0010431: seed maturation	7.91E-03
108	GO:0009269: response to desiccation	7.91E-03
109	GO:0003333: amino acid transmembrane transport	7.91E-03
110	GO:0071215: cellular response to abscisic acid stimulus	8.95E-03
111	GO:0009625: response to insect	8.95E-03
112	GO:0045492: xylan biosynthetic process	9.49E-03
113	GO:0010182: sugar mediated signaling pathway	1.12E-02
114	GO:0042752: regulation of circadian rhythm	1.18E-02
115	GO:0006814: sodium ion transport	1.18E-02
116	GO:0009556: microsporogenesis	1.24E-02
117	GO:0000302: response to reactive oxygen species	1.30E-02
118	GO:0009611: response to wounding	1.33E-02
119	GO:0032502: developmental process	1.36E-02
120	GO:0035556: intracellular signal transduction	1.39E-02
121	GO:1901657: glycosyl compound metabolic process	1.42E-02
122	GO:0045893: positive regulation of transcription, DNA-templated	1.54E-02
123	GO:0010286: heat acclimation	1.55E-02
124	GO:0046686: response to cadmium ion	1.61E-02
125	GO:0009651: response to salt stress	1.69E-02
126	GO:0055114: oxidation-reduction process	1.83E-02
127	GO:0006970: response to osmotic stress	1.84E-02
128	GO:0048573: photoperiodism, flowering	1.89E-02
129	GO:0009723: response to ethylene	1.97E-02
130	GO:0009817: defense response to fungus, incompatible interaction	2.03E-02
131	GO:0048481: plant ovule development	2.03E-02
132	GO:0006811: ion transport	2.18E-02
133	GO:0010200: response to chitin	2.19E-02
134	GO:0009910: negative regulation of flower development	2.25E-02
135	GO:0009631: cold acclimation	2.25E-02
136	GO:0010119: regulation of stomatal movement	2.25E-02
137	GO:0044550: secondary metabolite biosynthetic process	2.30E-02
138	GO:0006865: amino acid transport	2.33E-02
139	GO:0009867: jasmonic acid mediated signaling pathway	2.41E-02
140	GO:0007165: signal transduction	2.48E-02
141	GO:0045892: negative regulation of transcription, DNA-templated	2.57E-02
142	GO:0051707: response to other organism	2.88E-02
143	GO:0006629: lipid metabolic process	3.12E-02
144	GO:0009965: leaf morphogenesis	3.13E-02
145	GO:0009753: response to jasmonic acid	3.35E-02
146	GO:0006812: cation transport	3.39E-02
147	GO:0030154: cell differentiation	3.49E-02
148	GO:0009909: regulation of flower development	3.83E-02
149	GO:0043086: negative regulation of catalytic activity	4.01E-02
150	GO:0009553: embryo sac development	4.48E-02
151	GO:0009624: response to nematode	4.58E-02
152	GO:0018105: peptidyl-serine phosphorylation	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
9	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
10	GO:0031409: pigment binding	8.70E-21
11	GO:0016168: chlorophyll binding	5.30E-17
12	GO:0005515: protein binding	2.07E-05
13	GO:0000829: inositol heptakisphosphate kinase activity	1.31E-04
14	GO:0080079: cellobiose glucosidase activity	1.31E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	1.31E-04
16	GO:0102293: pheophytinase b activity	1.31E-04
17	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.31E-04
18	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.31E-04
19	GO:0016630: protochlorophyllide reductase activity	3.03E-04
20	GO:0015180: L-alanine transmembrane transporter activity	3.03E-04
21	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.03E-04
22	GO:0047746: chlorophyllase activity	3.03E-04
23	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.10E-04
24	GO:0046872: metal ion binding	4.92E-04
25	GO:0046592: polyamine oxidase activity	4.99E-04
26	GO:0004096: catalase activity	4.99E-04
27	GO:0009001: serine O-acetyltransferase activity	7.14E-04
28	GO:0015189: L-lysine transmembrane transporter activity	7.14E-04
29	GO:0015181: arginine transmembrane transporter activity	7.14E-04
30	GO:0003677: DNA binding	7.68E-04
31	GO:0004845: uracil phosphoribosyltransferase activity	9.47E-04
32	GO:0005313: L-glutamate transmembrane transporter activity	9.47E-04
33	GO:0004930: G-protein coupled receptor activity	9.47E-04
34	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.20E-03
35	GO:0000156: phosphorelay response regulator activity	1.25E-03
36	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.47E-03
37	GO:0004629: phospholipase C activity	1.47E-03
38	GO:0015297: antiporter activity	1.57E-03
39	GO:0004849: uridine kinase activity	1.76E-03
40	GO:0004435: phosphatidylinositol phospholipase C activity	1.76E-03
41	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	2.73E-03
42	GO:0071949: FAD binding	3.08E-03
43	GO:0000989: transcription factor activity, transcription factor binding	3.08E-03
44	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.08E-03
45	GO:0047372: acylglycerol lipase activity	4.24E-03
46	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.65E-03
47	GO:0015171: amino acid transmembrane transporter activity	4.95E-03
48	GO:0004565: beta-galactosidase activity	5.08E-03
49	GO:0004022: alcohol dehydrogenase (NAD) activity	5.08E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	5.08E-03
51	GO:0008131: primary amine oxidase activity	5.52E-03
52	GO:0005217: intracellular ligand-gated ion channel activity	5.97E-03
53	GO:0003712: transcription cofactor activity	5.97E-03
54	GO:0004970: ionotropic glutamate receptor activity	5.97E-03
55	GO:0005216: ion channel activity	7.40E-03
56	GO:0004707: MAP kinase activity	7.91E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.17E-03
58	GO:0008514: organic anion transmembrane transporter activity	9.49E-03
59	GO:0003727: single-stranded RNA binding	9.49E-03
60	GO:0005351: sugar:proton symporter activity	1.07E-02
61	GO:0102483: scopolin beta-glucosidase activity	1.89E-02
62	GO:0004497: monooxygenase activity	2.12E-02
63	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.18E-02
64	GO:0050897: cobalt ion binding	2.25E-02
65	GO:0003993: acid phosphatase activity	2.48E-02
66	GO:0008422: beta-glucosidase activity	2.56E-02
67	GO:0016787: hydrolase activity	2.59E-02
68	GO:0042393: histone binding	2.64E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	3.05E-02
70	GO:0005198: structural molecule activity	3.13E-02
71	GO:0015293: symporter activity	3.13E-02
72	GO:0044212: transcription regulatory region DNA binding	3.14E-02
73	GO:0043565: sequence-specific DNA binding	3.44E-02
74	GO:0005215: transporter activity	3.56E-02
75	GO:0031625: ubiquitin protein ligase binding	3.83E-02
76	GO:0045735: nutrient reservoir activity	4.01E-02
77	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.29E-02
78	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.29E-02
79	GO:0016874: ligase activity	4.39E-02
80	GO:0022857: transmembrane transporter activity	4.39E-02
81	GO:0015035: protein disulfide oxidoreductase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	2.01E-18
3	GO:0030076: light-harvesting complex	3.47E-16
4	GO:0010287: plastoglobule	4.08E-15
5	GO:0009535: chloroplast thylakoid membrane	1.30E-14
6	GO:0009941: chloroplast envelope	3.89E-14
7	GO:0009579: thylakoid	7.75E-14
8	GO:0009534: chloroplast thylakoid	8.30E-14
9	GO:0009523: photosystem II	3.69E-08
10	GO:0009507: chloroplast	3.96E-08
11	GO:0009517: PSII associated light-harvesting complex II	1.44E-05
12	GO:0042651: thylakoid membrane	2.11E-05
13	GO:0016021: integral component of membrane	2.48E-04
14	GO:0016020: membrane	3.72E-04
15	GO:0009898: cytoplasmic side of plasma membrane	9.47E-04
16	GO:0032586: protein storage vacuole membrane	9.47E-04
17	GO:0009533: chloroplast stromal thylakoid	2.06E-03
18	GO:0009538: photosystem I reaction center	2.39E-03
19	GO:0000326: protein storage vacuole	2.73E-03
20	GO:0010494: cytoplasmic stress granule	3.08E-03
21	GO:0031969: chloroplast membrane	3.81E-03
22	GO:0030095: chloroplast photosystem II	5.52E-03
23	GO:0009654: photosystem II oxygen evolving complex	7.40E-03
24	GO:0019898: extrinsic component of membrane	1.24E-02
25	GO:0000932: P-body	1.68E-02
26	GO:0009707: chloroplast outer membrane	2.03E-02
27	GO:0000151: ubiquitin ligase complex	2.03E-02
28	GO:0031977: thylakoid lumen	2.72E-02
29	GO:0031966: mitochondrial membrane	3.39E-02
30	GO:0016607: nuclear speck	4.11E-02
31	GO:0009706: chloroplast inner membrane	4.58E-02