Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071260: cellular response to mechanical stimulus0.00E+00
2GO:0042906: xanthine transport0.00E+00
3GO:0009877: nodulation0.00E+00
4GO:0010203: response to very low fluence red light stimulus0.00E+00
5GO:0030644: cellular chloride ion homeostasis0.00E+00
6GO:0010219: regulation of vernalization response0.00E+00
7GO:0010378: temperature compensation of the circadian clock0.00E+00
8GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0071311: cellular response to acetate0.00E+00
11GO:0009768: photosynthesis, light harvesting in photosystem I3.00E-15
12GO:0018298: protein-chromophore linkage5.59E-12
13GO:0010218: response to far red light1.32E-08
14GO:0009409: response to cold7.18E-08
15GO:0009637: response to blue light6.16E-07
16GO:0009416: response to light stimulus1.79E-06
17GO:0007623: circadian rhythm3.98E-06
18GO:0009645: response to low light intensity stimulus5.98E-06
19GO:0009769: photosynthesis, light harvesting in photosystem II5.98E-06
20GO:0010114: response to red light2.40E-05
21GO:0009644: response to high light intensity2.89E-05
22GO:0015979: photosynthesis4.63E-05
23GO:0010600: regulation of auxin biosynthetic process6.44E-05
24GO:0000380: alternative mRNA splicing, via spliceosome1.01E-04
25GO:0009817: defense response to fungus, incompatible interaction1.10E-04
26GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.00E-04
27GO:0042542: response to hydrogen peroxide2.41E-04
28GO:0010161: red light signaling pathway2.60E-04
29GO:0008643: carbohydrate transport2.94E-04
30GO:1900060: negative regulation of ceramide biosynthetic process3.17E-04
31GO:0010362: negative regulation of anion channel activity by blue light3.17E-04
32GO:0018002: N-terminal peptidyl-glutamic acid acetylation3.17E-04
33GO:0080173: male-female gamete recognition during double fertilization3.17E-04
34GO:1902265: abscisic acid homeostasis3.17E-04
35GO:0015812: gamma-aminobutyric acid transport3.17E-04
36GO:0032958: inositol phosphate biosynthetic process3.17E-04
37GO:0006475: internal protein amino acid acetylation3.17E-04
38GO:0006369: termination of RNA polymerase II transcription3.17E-04
39GO:0006474: N-terminal protein amino acid acetylation3.17E-04
40GO:0017198: N-terminal peptidyl-serine acetylation3.17E-04
41GO:0010201: response to continuous far red light stimulus by the high-irradiance response system3.17E-04
42GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.17E-04
43GO:0010928: regulation of auxin mediated signaling pathway3.28E-04
44GO:0009585: red, far-red light phototransduction4.18E-04
45GO:0009737: response to abscisic acid4.26E-04
46GO:0035556: intracellular signal transduction4.54E-04
47GO:0009414: response to water deprivation5.51E-04
48GO:0009638: phototropism5.72E-04
49GO:0010286: heat acclimation5.97E-04
50GO:0006883: cellular sodium ion homeostasis6.92E-04
51GO:0048833: specification of floral organ number6.92E-04
52GO:0015857: uracil transport6.92E-04
53GO:1902884: positive regulation of response to oxidative stress6.92E-04
54GO:0030259: lipid glycosylation6.92E-04
55GO:0051170: nuclear import6.92E-04
56GO:0030003: cellular cation homeostasis6.92E-04
57GO:0090156: cellular sphingolipid homeostasis6.92E-04
58GO:0015720: allantoin transport6.92E-04
59GO:0010155: regulation of proton transport6.92E-04
60GO:0006816: calcium ion transport7.70E-04
61GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process9.95E-04
62GO:0000160: phosphorelay signal transduction system1.02E-03
63GO:1902448: positive regulation of shade avoidance1.12E-03
64GO:0042344: indole glucosinolate catabolic process1.12E-03
65GO:0071230: cellular response to amino acid stimulus1.12E-03
66GO:0017006: protein-tetrapyrrole linkage1.12E-03
67GO:1901562: response to paraquat1.12E-03
68GO:0006598: polyamine catabolic process1.12E-03
69GO:0071705: nitrogen compound transport1.12E-03
70GO:0010119: regulation of stomatal movement1.16E-03
71GO:0034976: response to endoplasmic reticulum stress1.39E-03
72GO:0009651: response to salt stress1.52E-03
73GO:0010601: positive regulation of auxin biosynthetic process1.61E-03
74GO:0009584: detection of visible light1.61E-03
75GO:0044211: CTP salvage1.61E-03
76GO:0015749: monosaccharide transport1.61E-03
77GO:1901332: negative regulation of lateral root development1.61E-03
78GO:0006020: inositol metabolic process1.61E-03
79GO:0006874: cellular calcium ion homeostasis1.70E-03
80GO:0009640: photomorphogenesis1.78E-03
81GO:0009269: response to desiccation1.86E-03
82GO:0048511: rhythmic process1.86E-03
83GO:0010017: red or far-red light signaling pathway2.04E-03
84GO:0048442: sepal development2.16E-03
85GO:0009765: photosynthesis, light harvesting2.16E-03
86GO:2000306: positive regulation of photomorphogenesis2.16E-03
87GO:1901002: positive regulation of response to salt stress2.16E-03
88GO:0030104: water homeostasis2.16E-03
89GO:0044206: UMP salvage2.16E-03
90GO:0006646: phosphatidylethanolamine biosynthetic process2.16E-03
91GO:0009687: abscisic acid metabolic process2.16E-03
92GO:0015743: malate transport2.16E-03
93GO:0000165: MAPK cascade2.28E-03
94GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.62E-03
95GO:0051603: proteolysis involved in cellular protein catabolic process2.73E-03
96GO:0048578: positive regulation of long-day photoperiodism, flowering2.76E-03
97GO:0009904: chloroplast accumulation movement2.76E-03
98GO:0097428: protein maturation by iron-sulfur cluster transfer2.76E-03
99GO:0043097: pyrimidine nucleoside salvage2.76E-03
100GO:0006814: sodium ion transport3.28E-03
101GO:0007165: signal transduction3.38E-03
102GO:0042732: D-xylose metabolic process3.40E-03
103GO:0031053: primary miRNA processing3.40E-03
104GO:0045962: positive regulation of development, heterochronic3.40E-03
105GO:0002238: response to molecule of fungal origin3.40E-03
106GO:0006206: pyrimidine nucleobase metabolic process3.40E-03
107GO:0009635: response to herbicide3.40E-03
108GO:0000741: karyogamy3.40E-03
109GO:0000060: protein import into nucleus, translocation3.40E-03
110GO:0006970: response to osmotic stress3.59E-03
111GO:0017148: negative regulation of translation4.10E-03
112GO:0009903: chloroplast avoidance movement4.10E-03
113GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.10E-03
114GO:0010077: maintenance of inflorescence meristem identity4.10E-03
115GO:0080167: response to karrikin4.44E-03
116GO:0019760: glucosinolate metabolic process4.56E-03
117GO:0009735: response to cytokinin4.69E-03
118GO:0048437: floral organ development4.84E-03
119GO:0010196: nonphotochemical quenching4.84E-03
120GO:0010038: response to metal ion4.84E-03
121GO:0010044: response to aluminum ion4.84E-03
122GO:0009061: anaerobic respiration5.62E-03
123GO:0009819: drought recovery5.62E-03
124GO:0009415: response to water5.62E-03
125GO:0009704: de-etiolation5.62E-03
126GO:0032508: DNA duplex unwinding5.62E-03
127GO:0010029: regulation of seed germination5.75E-03
128GO:0045892: negative regulation of transcription, DNA-templated5.99E-03
129GO:0010099: regulation of photomorphogenesis6.44E-03
130GO:0009827: plant-type cell wall modification6.44E-03
131GO:0001510: RNA methylation6.44E-03
132GO:0006355: regulation of transcription, DNA-templated6.96E-03
133GO:0046685: response to arsenic-containing substance7.30E-03
134GO:0006098: pentose-phosphate shunt7.30E-03
135GO:0090333: regulation of stomatal closure7.30E-03
136GO:0046916: cellular transition metal ion homeostasis7.30E-03
137GO:0009408: response to heat8.04E-03
138GO:0030042: actin filament depolymerization8.21E-03
139GO:0048354: mucilage biosynthetic process involved in seed coat development8.21E-03
140GO:0009631: cold acclimation8.22E-03
141GO:0010043: response to zinc ion8.22E-03
142GO:0045087: innate immune response9.01E-03
143GO:0055062: phosphate ion homeostasis9.15E-03
144GO:0010162: seed dormancy process9.15E-03
145GO:0009970: cellular response to sulfate starvation9.15E-03
146GO:0006535: cysteine biosynthetic process from serine9.15E-03
147GO:0006995: cellular response to nitrogen starvation9.15E-03
148GO:0048441: petal development9.15E-03
149GO:0009641: shade avoidance9.15E-03
150GO:0009739: response to gibberellin9.47E-03
151GO:0009682: induced systemic resistance1.01E-02
152GO:0052544: defense response by callose deposition in cell wall1.01E-02
153GO:0030148: sphingolipid biosynthetic process1.01E-02
154GO:0010468: regulation of gene expression1.03E-02
155GO:0016925: protein sumoylation1.11E-02
156GO:0000209: protein polyubiquitination1.21E-02
157GO:0009785: blue light signaling pathway1.22E-02
158GO:0050826: response to freezing1.22E-02
159GO:0009718: anthocyanin-containing compound biosynthetic process1.22E-02
160GO:0009767: photosynthetic electron transport chain1.22E-02
161GO:0010207: photosystem II assembly1.33E-02
162GO:0048440: carpel development1.33E-02
163GO:0007034: vacuolar transport1.33E-02
164GO:0007015: actin filament organization1.33E-02
165GO:0009266: response to temperature stimulus1.33E-02
166GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.41E-02
167GO:0019853: L-ascorbic acid biosynthetic process1.44E-02
168GO:0090351: seedling development1.44E-02
169GO:0010030: positive regulation of seed germination1.44E-02
170GO:0019344: cysteine biosynthetic process1.67E-02
171GO:0006406: mRNA export from nucleus1.67E-02
172GO:0016575: histone deacetylation1.80E-02
173GO:0009738: abscisic acid-activated signaling pathway1.82E-02
174GO:0042742: defense response to bacterium1.86E-02
175GO:0006979: response to oxidative stress1.89E-02
176GO:0061077: chaperone-mediated protein folding1.92E-02
177GO:0003333: amino acid transmembrane transport1.92E-02
178GO:0010431: seed maturation1.92E-02
179GO:0006351: transcription, DNA-templated2.03E-02
180GO:0019748: secondary metabolic process2.05E-02
181GO:0009553: embryo sac development2.18E-02
182GO:0009693: ethylene biosynthetic process2.18E-02
183GO:0071215: cellular response to abscisic acid stimulus2.18E-02
184GO:0006012: galactose metabolic process2.18E-02
185GO:0048443: stamen development2.31E-02
186GO:0019722: calcium-mediated signaling2.31E-02
187GO:0070417: cellular response to cold2.45E-02
188GO:0034220: ion transmembrane transport2.59E-02
189GO:0010501: RNA secondary structure unwinding2.59E-02
190GO:0055085: transmembrane transport2.72E-02
191GO:0010197: polar nucleus fusion2.73E-02
192GO:0046323: glucose import2.73E-02
193GO:0006457: protein folding2.80E-02
194GO:0042752: regulation of circadian rhythm2.88E-02
195GO:0009058: biosynthetic process2.96E-02
196GO:0008654: phospholipid biosynthetic process3.02E-02
197GO:0009556: microsporogenesis3.02E-02
198GO:0000302: response to reactive oxygen species3.17E-02
199GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.17E-02
200GO:0006952: defense response3.19E-02
201GO:0009630: gravitropism3.32E-02
202GO:1901657: glycosyl compound metabolic process3.48E-02
203GO:0009567: double fertilization forming a zygote and endosperm3.64E-02
204GO:0005975: carbohydrate metabolic process3.74E-02
205GO:0046686: response to cadmium ion3.90E-02
206GO:0010228: vegetative to reproductive phase transition of meristem4.05E-02
207GO:0016126: sterol biosynthetic process4.12E-02
208GO:0009911: positive regulation of flower development4.12E-02
209GO:0008380: RNA splicing4.61E-02
210GO:0009617: response to bacterium4.61E-02
211GO:0015995: chlorophyll biosynthetic process4.63E-02
212GO:0048573: photoperiodism, flowering4.63E-02
213GO:0006950: response to stress4.63E-02
214GO:0048481: plant ovule development4.98E-02
RankGO TermAdjusted P value
1GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
2GO:0042907: xanthine transmembrane transporter activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0009045: xylose isomerase activity0.00E+00
5GO:0080082: esculin beta-glucosidase activity0.00E+00
6GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
7GO:0004567: beta-mannosidase activity0.00E+00
8GO:0015276: ligand-gated ion channel activity0.00E+00
9GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
10GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
11GO:0047668: amygdalin beta-glucosidase activity0.00E+00
12GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity0.00E+00
13GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
14GO:0005272: sodium channel activity0.00E+00
15GO:0031409: pigment binding1.20E-13
16GO:0016168: chlorophyll binding9.68E-11
17GO:0005253: anion channel activity6.44E-05
18GO:0004707: MAP kinase activity1.63E-04
19GO:0000829: inositol heptakisphosphate kinase activity3.17E-04
20GO:0080079: cellobiose glucosidase activity3.17E-04
21GO:1990189: peptide-serine-N-acetyltransferase activity3.17E-04
22GO:0046870: cadmium ion binding3.17E-04
23GO:0008066: glutamate receptor activity3.17E-04
24GO:0000828: inositol hexakisphosphate kinase activity3.17E-04
25GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.17E-04
26GO:1990190: peptide-glutamate-N-acetyltransferase activity3.17E-04
27GO:0030275: LRR domain binding3.17E-04
28GO:0031516: far-red light photoreceptor activity3.17E-04
29GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.17E-04
30GO:0009679: hexose:proton symporter activity3.17E-04
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.92E-04
32GO:0015180: L-alanine transmembrane transporter activity6.92E-04
33GO:0050017: L-3-cyanoalanine synthase activity6.92E-04
34GO:0032791: lead ion binding6.92E-04
35GO:0005274: allantoin uptake transmembrane transporter activity6.92E-04
36GO:0009883: red or far-red light photoreceptor activity6.92E-04
37GO:0004609: phosphatidylserine decarboxylase activity6.92E-04
38GO:0047216: inositol 3-alpha-galactosyltransferase activity6.92E-04
39GO:0005515: protein binding9.50E-04
40GO:0000155: phosphorelay sensor kinase activity9.95E-04
41GO:0005262: calcium channel activity9.95E-04
42GO:0031624: ubiquitin conjugating enzyme binding1.12E-03
43GO:0017150: tRNA dihydrouridine synthase activity1.12E-03
44GO:0008020: G-protein coupled photoreceptor activity1.12E-03
45GO:0004096: catalase activity1.12E-03
46GO:0046592: polyamine oxidase activity1.12E-03
47GO:0019948: SUMO activating enzyme activity1.12E-03
48GO:0004970: ionotropic glutamate receptor activity1.25E-03
49GO:0005217: intracellular ligand-gated ion channel activity1.25E-03
50GO:0015189: L-lysine transmembrane transporter activity1.61E-03
51GO:0000254: C-4 methylsterol oxidase activity1.61E-03
52GO:0015181: arginine transmembrane transporter activity1.61E-03
53GO:0009882: blue light photoreceptor activity1.61E-03
54GO:0015210: uracil transmembrane transporter activity2.16E-03
55GO:0005313: L-glutamate transmembrane transporter activity2.16E-03
56GO:0004845: uracil phosphoribosyltransferase activity2.16E-03
57GO:0010294: abscisic acid glucosyltransferase activity2.76E-03
58GO:0015145: monosaccharide transmembrane transporter activity2.76E-03
59GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.76E-03
60GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.76E-03
61GO:0004629: phospholipase C activity3.40E-03
62GO:0019137: thioglucosidase activity3.40E-03
63GO:0015562: efflux transmembrane transporter activity3.40E-03
64GO:0005247: voltage-gated chloride channel activity3.40E-03
65GO:0004197: cysteine-type endopeptidase activity4.02E-03
66GO:0004849: uridine kinase activity4.10E-03
67GO:0004435: phosphatidylinositol phospholipase C activity4.10E-03
68GO:0005261: cation channel activity4.10E-03
69GO:0004124: cysteine synthase activity4.10E-03
70GO:0000156: phosphorelay response regulator activity4.28E-03
71GO:0004672: protein kinase activity4.42E-03
72GO:0015140: malate transmembrane transporter activity4.84E-03
73GO:0004525: ribonuclease III activity5.62E-03
74GO:0004033: aldo-keto reductase (NADP) activity5.62E-03
75GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.63E-03
76GO:0102483: scopolin beta-glucosidase activity6.41E-03
77GO:0005267: potassium channel activity6.44E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.44E-03
79GO:0001104: RNA polymerase II transcription cofactor activity6.44E-03
80GO:0015144: carbohydrate transmembrane transporter activity6.84E-03
81GO:0000989: transcription factor activity, transcription factor binding7.30E-03
82GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.30E-03
83GO:0046872: metal ion binding7.32E-03
84GO:0005351: sugar:proton symporter activity7.97E-03
85GO:0050897: cobalt ion binding8.22E-03
86GO:0004673: protein histidine kinase activity9.15E-03
87GO:0008422: beta-glucosidase activity9.85E-03
88GO:0004177: aminopeptidase activity1.01E-02
89GO:0047372: acylglycerol lipase activity1.01E-02
90GO:0008081: phosphoric diester hydrolase activity1.22E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity1.22E-02
92GO:0004565: beta-galactosidase activity1.22E-02
93GO:0005315: inorganic phosphate transmembrane transporter activity1.22E-02
94GO:0005198: structural molecule activity1.31E-02
95GO:0008131: primary amine oxidase activity1.33E-02
96GO:0003712: transcription cofactor activity1.44E-02
97GO:0004407: histone deacetylase activity1.67E-02
98GO:0008134: transcription factor binding1.67E-02
99GO:0051536: iron-sulfur cluster binding1.67E-02
100GO:0008234: cysteine-type peptidase activity1.74E-02
101GO:0031625: ubiquitin protein ligase binding1.74E-02
102GO:0008324: cation transmembrane transporter activity1.80E-02
103GO:0004497: monooxygenase activity1.88E-02
104GO:0019706: protein-cysteine S-palmitoyltransferase activity1.92E-02
105GO:0061630: ubiquitin protein ligase activity2.01E-02
106GO:0022891: substrate-specific transmembrane transporter activity2.18E-02
107GO:0008514: organic anion transmembrane transporter activity2.31E-02
108GO:0003756: protein disulfide isomerase activity2.31E-02
109GO:0008270: zinc ion binding2.55E-02
110GO:0008080: N-acetyltransferase activity2.73E-02
111GO:0010181: FMN binding2.88E-02
112GO:0003700: transcription factor activity, sequence-specific DNA binding3.17E-02
113GO:0004842: ubiquitin-protein transferase activity3.21E-02
114GO:0003729: mRNA binding3.62E-02
115GO:0015297: antiporter activity3.70E-02
116GO:0042802: identical protein binding4.90E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I7.64E-12
2GO:0030076: light-harvesting complex7.90E-12
3GO:0010287: plastoglobule2.87E-09
4GO:0009523: photosystem II1.08E-06
5GO:0009579: thylakoid3.92E-06
6GO:0009534: chloroplast thylakoid2.82E-05
7GO:0009898: cytoplasmic side of plasma membrane6.44E-05
8GO:0009517: PSII associated light-harvesting complex II6.44E-05
9GO:0009941: chloroplast envelope6.56E-05
10GO:0016021: integral component of membrane9.17E-05
11GO:0000151: ubiquitin ligase complex1.10E-04
12GO:0042651: thylakoid membrane1.43E-04
13GO:0009783: photosystem II antenna complex3.17E-04
14GO:0035339: SPOTS complex3.17E-04
15GO:0009535: chloroplast thylakoid membrane4.93E-04
16GO:0031415: NatA complex6.92E-04
17GO:0005764: lysosome1.12E-03
18GO:0000323: lytic vacuole1.61E-03
19GO:0005777: peroxisome1.98E-03
20GO:0010445: nuclear dicing body2.16E-03
21GO:0032586: protein storage vacuole membrane2.16E-03
22GO:0016607: nuclear speck3.36E-03
23GO:0070847: core mediator complex3.40E-03
24GO:0005851: eukaryotic translation initiation factor 2B complex3.40E-03
25GO:0034707: chloride channel complex3.40E-03
26GO:0000815: ESCRT III complex4.10E-03
27GO:0009533: chloroplast stromal thylakoid4.84E-03
28GO:0009986: cell surface4.84E-03
29GO:0016020: membrane5.23E-03
30GO:0005773: vacuole5.35E-03
31GO:0000326: protein storage vacuole6.44E-03
32GO:0010494: cytoplasmic stress granule7.30E-03
33GO:0016604: nuclear body8.21E-03
34GO:0005783: endoplasmic reticulum1.11E-02
35GO:0005622: intracellular1.49E-02
36GO:0005681: spliceosomal complex1.86E-02
37GO:0015629: actin cytoskeleton2.18E-02
38GO:0005886: plasma membrane3.01E-02
39GO:0031965: nuclear membrane3.02E-02
40GO:0016592: mediator complex3.32E-02
41GO:0009507: chloroplast3.71E-02
42GO:0000932: P-body4.12E-02
43GO:0005615: extracellular space4.33E-02
Gene type



Gene DE type