GO Enrichment Analysis of Co-expressed Genes with
AT3G46780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0007172: signal complex assembly | 0.00E+00 |
| 2 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 3 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 1.57E-08 |
| 5 | GO:0006783: heme biosynthetic process | 4.04E-07 |
| 6 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.54E-07 |
| 7 | GO:0090391: granum assembly | 9.50E-07 |
| 8 | GO:0009913: epidermal cell differentiation | 1.13E-05 |
| 9 | GO:0034337: RNA folding | 6.58E-05 |
| 10 | GO:0006898: receptor-mediated endocytosis | 1.59E-04 |
| 11 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.68E-04 |
| 12 | GO:0016045: detection of bacterium | 2.69E-04 |
| 13 | GO:0010359: regulation of anion channel activity | 2.69E-04 |
| 14 | GO:0045493: xylan catabolic process | 2.69E-04 |
| 15 | GO:0048825: cotyledon development | 4.26E-04 |
| 16 | GO:0009828: plant-type cell wall loosening | 5.49E-04 |
| 17 | GO:0048497: maintenance of floral organ identity | 6.60E-04 |
| 18 | GO:0010438: cellular response to sulfur starvation | 6.60E-04 |
| 19 | GO:0010411: xyloglucan metabolic process | 7.62E-04 |
| 20 | GO:0009759: indole glucosinolate biosynthetic process | 8.06E-04 |
| 21 | GO:0009942: longitudinal axis specification | 9.59E-04 |
| 22 | GO:1901259: chloroplast rRNA processing | 9.59E-04 |
| 23 | GO:0010196: nonphotochemical quenching | 1.12E-03 |
| 24 | GO:0010492: maintenance of shoot apical meristem identity | 1.29E-03 |
| 25 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.29E-03 |
| 26 | GO:0015979: photosynthesis | 1.39E-03 |
| 27 | GO:0007389: pattern specification process | 1.47E-03 |
| 28 | GO:0022900: electron transport chain | 1.47E-03 |
| 29 | GO:0010206: photosystem II repair | 1.65E-03 |
| 30 | GO:0048507: meristem development | 1.65E-03 |
| 31 | GO:0009664: plant-type cell wall organization | 1.67E-03 |
| 32 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.85E-03 |
| 33 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.26E-03 |
| 34 | GO:0052544: defense response by callose deposition in cell wall | 2.26E-03 |
| 35 | GO:0002213: defense response to insect | 2.48E-03 |
| 36 | GO:0006508: proteolysis | 2.81E-03 |
| 37 | GO:0010207: photosystem II assembly | 2.93E-03 |
| 38 | GO:0009934: regulation of meristem structural organization | 2.93E-03 |
| 39 | GO:0000162: tryptophan biosynthetic process | 3.40E-03 |
| 40 | GO:0009845: seed germination | 3.41E-03 |
| 41 | GO:0051017: actin filament bundle assembly | 3.65E-03 |
| 42 | GO:0007017: microtubule-based process | 3.90E-03 |
| 43 | GO:0016998: cell wall macromolecule catabolic process | 4.17E-03 |
| 44 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.43E-03 |
| 45 | GO:0071369: cellular response to ethylene stimulus | 4.70E-03 |
| 46 | GO:0007166: cell surface receptor signaling pathway | 4.95E-03 |
| 47 | GO:0080022: primary root development | 5.55E-03 |
| 48 | GO:0009826: unidimensional cell growth | 6.45E-03 |
| 49 | GO:0000302: response to reactive oxygen species | 6.76E-03 |
| 50 | GO:0010583: response to cyclopentenone | 7.08E-03 |
| 51 | GO:0016032: viral process | 7.08E-03 |
| 52 | GO:0010252: auxin homeostasis | 7.73E-03 |
| 53 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.59E-03 |
| 54 | GO:0010027: thylakoid membrane organization | 8.74E-03 |
| 55 | GO:0007568: aging | 1.17E-02 |
| 56 | GO:0016051: carbohydrate biosynthetic process | 1.24E-02 |
| 57 | GO:0034599: cellular response to oxidative stress | 1.28E-02 |
| 58 | GO:0006839: mitochondrial transport | 1.36E-02 |
| 59 | GO:0009926: auxin polar transport | 1.49E-02 |
| 60 | GO:0042546: cell wall biogenesis | 1.53E-02 |
| 61 | GO:0031347: regulation of defense response | 1.70E-02 |
| 62 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.88E-02 |
| 63 | GO:0009735: response to cytokinin | 2.00E-02 |
| 64 | GO:0009624: response to nematode | 2.36E-02 |
| 65 | GO:0006396: RNA processing | 2.41E-02 |
| 66 | GO:0009742: brassinosteroid mediated signaling pathway | 2.46E-02 |
| 67 | GO:0009737: response to abscisic acid | 2.51E-02 |
| 68 | GO:0045893: positive regulation of transcription, DNA-templated | 2.51E-02 |
| 69 | GO:0042744: hydrogen peroxide catabolic process | 3.04E-02 |
| 70 | GO:0045490: pectin catabolic process | 3.49E-02 |
| 71 | GO:0008380: RNA splicing | 3.95E-02 |
| 72 | GO:0006468: protein phosphorylation | 4.27E-02 |
| 73 | GO:0071555: cell wall organization | 4.41E-02 |
| 74 | GO:0042742: defense response to bacterium | 4.41E-02 |
| 75 | GO:0030154: cell differentiation | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 2 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 3 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 6 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 6.58E-05 |
| 7 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.59E-04 |
| 8 | GO:0016851: magnesium chelatase activity | 3.90E-04 |
| 9 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.81E-04 |
| 10 | GO:0009044: xylan 1,4-beta-xylosidase activity | 5.20E-04 |
| 11 | GO:0046556: alpha-L-arabinofuranosidase activity | 5.20E-04 |
| 12 | GO:0004130: cytochrome-c peroxidase activity | 8.06E-04 |
| 13 | GO:0004525: ribonuclease III activity | 1.29E-03 |
| 14 | GO:0009672: auxin:proton symporter activity | 1.85E-03 |
| 15 | GO:0015020: glucuronosyltransferase activity | 2.05E-03 |
| 16 | GO:0047372: acylglycerol lipase activity | 2.26E-03 |
| 17 | GO:0016301: kinase activity | 2.36E-03 |
| 18 | GO:0031072: heat shock protein binding | 2.70E-03 |
| 19 | GO:0010329: auxin efflux transmembrane transporter activity | 2.70E-03 |
| 20 | GO:0004252: serine-type endopeptidase activity | 3.50E-03 |
| 21 | GO:0003714: transcription corepressor activity | 3.65E-03 |
| 22 | GO:0033612: receptor serine/threonine kinase binding | 4.17E-03 |
| 23 | GO:0030570: pectate lyase activity | 4.70E-03 |
| 24 | GO:0003756: protein disulfide isomerase activity | 4.98E-03 |
| 25 | GO:0016787: hydrolase activity | 6.31E-03 |
| 26 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 6.76E-03 |
| 27 | GO:0051015: actin filament binding | 7.40E-03 |
| 28 | GO:0005525: GTP binding | 7.42E-03 |
| 29 | GO:0005200: structural constituent of cytoskeleton | 8.06E-03 |
| 30 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 8.06E-03 |
| 31 | GO:0008375: acetylglucosaminyltransferase activity | 9.44E-03 |
| 32 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 9.79E-03 |
| 33 | GO:0008236: serine-type peptidase activity | 1.02E-02 |
| 34 | GO:0003746: translation elongation factor activity | 1.24E-02 |
| 35 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.32E-02 |
| 36 | GO:0004185: serine-type carboxypeptidase activity | 1.49E-02 |
| 37 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.57E-02 |
| 38 | GO:0043621: protein self-association | 1.57E-02 |
| 39 | GO:0008289: lipid binding | 1.71E-02 |
| 40 | GO:0003777: microtubule motor activity | 1.98E-02 |
| 41 | GO:0016874: ligase activity | 2.26E-02 |
| 42 | GO:0043565: sequence-specific DNA binding | 2.34E-02 |
| 43 | GO:0051082: unfolded protein binding | 2.36E-02 |
| 44 | GO:0008026: ATP-dependent helicase activity | 2.46E-02 |
| 45 | GO:0019843: rRNA binding | 2.77E-02 |
| 46 | GO:0016829: lyase activity | 2.93E-02 |
| 47 | GO:0008017: microtubule binding | 3.60E-02 |
| 48 | GO:0003723: RNA binding | 4.32E-02 |
| 49 | GO:0004601: peroxidase activity | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.06E-13 |
| 2 | GO:0009534: chloroplast thylakoid | 1.07E-10 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.38E-09 |
| 4 | GO:0009570: chloroplast stroma | 7.65E-06 |
| 5 | GO:0009941: chloroplast envelope | 1.49E-05 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.40E-05 |
| 7 | GO:0009515: granal stacked thylakoid | 6.58E-05 |
| 8 | GO:0010007: magnesium chelatase complex | 2.69E-04 |
| 9 | GO:0005618: cell wall | 2.88E-04 |
| 10 | GO:0042646: plastid nucleoid | 3.90E-04 |
| 11 | GO:0016363: nuclear matrix | 9.59E-04 |
| 12 | GO:0031977: thylakoid lumen | 1.24E-03 |
| 13 | GO:0045298: tubulin complex | 1.65E-03 |
| 14 | GO:0055028: cortical microtubule | 2.05E-03 |
| 15 | GO:0016020: membrane | 2.44E-03 |
| 16 | GO:0032040: small-subunit processome | 2.48E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 2.93E-03 |
| 18 | GO:0015629: actin cytoskeleton | 4.70E-03 |
| 19 | GO:0009579: thylakoid | 4.95E-03 |
| 20 | GO:0009522: photosystem I | 6.15E-03 |
| 21 | GO:0009523: photosystem II | 6.45E-03 |
| 22 | GO:0005874: microtubule | 8.02E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 8.74E-03 |
| 24 | GO:0000325: plant-type vacuole | 1.17E-02 |
| 25 | GO:0005856: cytoskeleton | 1.62E-02 |
| 26 | GO:0010008: endosome membrane | 2.12E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 2.36E-02 |
| 28 | GO:0009506: plasmodesma | 3.47E-02 |
| 29 | GO:0005576: extracellular region | 4.19E-02 |
| 30 | GO:0005840: ribosome | 4.62E-02 |
| 31 | GO:0048046: apoplast | 4.86E-02 |