co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0032544: plastid translation	2.84E-05
4	GO:0071588: hydrogen peroxide mediated signaling pathway	5.48E-05
5	GO:1904966: positive regulation of vitamin E biosynthetic process	5.48E-05
6	GO:1904964: positive regulation of phytol biosynthetic process	5.48E-05
7	GO:0042759: long-chain fatty acid biosynthetic process	5.48E-05
8	GO:0009658: chloroplast organization	6.50E-05
9	GO:0015979: photosynthesis	1.22E-04
10	GO:0010025: wax biosynthetic process	1.25E-04
11	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.34E-04
12	GO:0090506: axillary shoot meristem initiation	2.28E-04
13	GO:0071492: cellular response to UV-A	2.28E-04
14	GO:0042335: cuticle development	2.70E-04
15	GO:0051085: chaperone mediated protein folding requiring cofactor	3.33E-04
16	GO:0010088: phloem development	3.33E-04
17	GO:0016556: mRNA modification	3.33E-04
18	GO:0006986: response to unfolded protein	3.33E-04
19	GO:0071486: cellular response to high light intensity	4.45E-04
20	GO:0006665: sphingolipid metabolic process	5.66E-04
21	GO:0015995: chlorophyll biosynthetic process	6.07E-04
22	GO:0055114: oxidation-reduction process	6.63E-04
23	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.92E-04
24	GO:0016554: cytidine to uridine editing	6.92E-04
25	GO:0006014: D-ribose metabolic process	6.92E-04
26	GO:0010067: procambium histogenesis	8.25E-04
27	GO:0010019: chloroplast-nucleus signaling pathway	8.25E-04
28	GO:0034599: cellular response to oxidative stress	8.75E-04
29	GO:0045454: cell redox homeostasis	1.09E-03
30	GO:0009819: drought recovery	1.11E-03
31	GO:0042255: ribosome assembly	1.11E-03
32	GO:0006353: DNA-templated transcription, termination	1.11E-03
33	GO:1900865: chloroplast RNA modification	1.58E-03
34	GO:0042761: very long-chain fatty acid biosynthetic process	1.58E-03
35	GO:0009773: photosynthetic electron transport in photosystem I	1.93E-03
36	GO:0006415: translational termination	1.93E-03
37	GO:0043085: positive regulation of catalytic activity	1.93E-03
38	GO:0010020: chloroplast fission	2.49E-03
39	GO:0010223: secondary shoot formation	2.49E-03
40	GO:0019762: glucosinolate catabolic process	2.90E-03
41	GO:0006418: tRNA aminoacylation for protein translation	3.32E-03
42	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.00E-03
43	GO:0001944: vasculature development	4.00E-03
44	GO:0006457: protein folding	4.04E-03
45	GO:0010089: xylem development	4.23E-03
46	GO:0010091: trichome branching	4.23E-03
47	GO:0016117: carotenoid biosynthetic process	4.47E-03
48	GO:0010087: phloem or xylem histogenesis	4.71E-03
49	GO:0006662: glycerol ether metabolic process	4.96E-03
50	GO:0048544: recognition of pollen	5.22E-03
51	GO:0007018: microtubule-based movement	5.22E-03
52	GO:0019252: starch biosynthetic process	5.48E-03
53	GO:0000302: response to reactive oxygen species	5.74E-03
54	GO:0032502: developmental process	6.00E-03
55	GO:0009828: plant-type cell wall loosening	6.55E-03
56	GO:0010027: thylakoid membrane organization	7.40E-03
57	GO:0048481: plant ovule development	8.91E-03
58	GO:0018298: protein-chromophore linkage	8.91E-03
59	GO:0009631: cold acclimation	9.86E-03
60	GO:0016051: carbohydrate biosynthetic process	1.05E-02
61	GO:0008152: metabolic process	1.06E-02
62	GO:0009644: response to high light intensity	1.33E-02
63	GO:0009664: plant-type cell wall organization	1.48E-02
64	GO:0009809: lignin biosynthetic process	1.55E-02
65	GO:0006813: potassium ion transport	1.55E-02
66	GO:0055085: transmembrane transport	2.18E-02
67	GO:0042744: hydrogen peroxide catabolic process	2.57E-02
68	GO:0006633: fatty acid biosynthetic process	2.75E-02
69	GO:0006413: translational initiation	2.80E-02
70	GO:0040008: regulation of growth	2.85E-02
71	GO:0010150: leaf senescence	2.94E-02
72	GO:0009451: RNA modification	2.99E-02
73	GO:0008380: RNA splicing	3.34E-02
74	GO:0042742: defense response to bacterium	3.48E-02
75	GO:0009826: unidimensional cell growth	3.91E-02
76	GO:0048366: leaf development	4.51E-02
77	GO:0080167: response to karrikin	4.68E-02
78	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0051920: peroxiredoxin activity	1.21E-05
8	GO:0016209: antioxidant activity	2.21E-05
9	GO:0004560: alpha-L-fucosidase activity	5.48E-05
10	GO:0016630: protochlorophyllide reductase activity	1.34E-04
11	GO:0022891: substrate-specific transmembrane transporter activity	2.10E-04
12	GO:0009055: electron carrier activity	2.14E-04
13	GO:0002161: aminoacyl-tRNA editing activity	2.28E-04
14	GO:0016149: translation release factor activity, codon specific	3.33E-04
15	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.33E-04
16	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.45E-04
17	GO:1990137: plant seed peroxidase activity	4.45E-04
18	GO:0043495: protein anchor	4.45E-04
19	GO:0016168: chlorophyll binding	5.47E-04
20	GO:0009922: fatty acid elongase activity	5.66E-04
21	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.66E-04
22	GO:0003959: NADPH dehydrogenase activity	5.66E-04
23	GO:0004601: peroxidase activity	6.72E-04
24	GO:0004130: cytochrome-c peroxidase activity	6.92E-04
25	GO:0016688: L-ascorbate peroxidase activity	6.92E-04
26	GO:0004747: ribokinase activity	8.25E-04
27	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.25E-04
28	GO:0016831: carboxy-lyase activity	9.62E-04
29	GO:0019899: enzyme binding	9.62E-04
30	GO:0004033: aldo-keto reductase (NADP) activity	1.11E-03
31	GO:0008865: fructokinase activity	1.11E-03
32	GO:0052747: sinapyl alcohol dehydrogenase activity	1.11E-03
33	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.24E-03
34	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.41E-03
35	GO:0003747: translation release factor activity	1.41E-03
36	GO:0004519: endonuclease activity	1.57E-03
37	GO:0008047: enzyme activator activity	1.75E-03
38	GO:0030234: enzyme regulator activity	1.75E-03
39	GO:0000049: tRNA binding	2.11E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.11E-03
41	GO:0019843: rRNA binding	2.49E-03
42	GO:0051087: chaperone binding	3.32E-03
43	GO:0008324: cation transmembrane transporter activity	3.32E-03
44	GO:0033612: receptor serine/threonine kinase binding	3.54E-03
45	GO:0003727: single-stranded RNA binding	4.23E-03
46	GO:0042802: identical protein binding	4.34E-03
47	GO:0004812: aminoacyl-tRNA ligase activity	4.47E-03
48	GO:0005102: receptor binding	4.47E-03
49	GO:0047134: protein-disulfide reductase activity	4.47E-03
50	GO:0004791: thioredoxin-disulfide reductase activity	5.22E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	5.38E-03
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.27E-03
53	GO:0052689: carboxylic ester hydrolase activity	7.22E-03
54	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	9.86E-03
55	GO:0051537: 2 iron, 2 sulfur cluster binding	1.33E-02
56	GO:0043621: protein self-association	1.33E-02
57	GO:0008289: lipid binding	1.35E-02
58	GO:0005198: structural molecule activity	1.37E-02
59	GO:0003690: double-stranded DNA binding	1.59E-02
60	GO:0003777: microtubule motor activity	1.67E-02
61	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.79E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.87E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.87E-02
64	GO:0051082: unfolded protein binding	1.99E-02
65	GO:0015035: protein disulfide oxidoreductase activity	2.04E-02
66	GO:0008017: microtubule binding	3.04E-02
67	GO:0008194: UDP-glycosyltransferase activity	3.19E-02
68	GO:0005509: calcium ion binding	3.21E-02
69	GO:0003743: translation initiation factor activity	3.29E-02
70	GO:0016301: kinase activity	3.44E-02
71	GO:0050660: flavin adenine dinucleotide binding	4.45E-02
72	GO:0016491: oxidoreductase activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.40E-13
2	GO:0009570: chloroplast stroma	2.76E-07
3	GO:0009534: chloroplast thylakoid	4.47E-07
4	GO:0009941: chloroplast envelope	5.72E-06
5	GO:0009923: fatty acid elongase complex	5.48E-05
6	GO:0042651: thylakoid membrane	1.57E-04
7	GO:0009535: chloroplast thylakoid membrane	2.19E-04
8	GO:0009523: photosystem II	3.37E-04
9	GO:0000793: condensed chromosome	6.92E-04
10	GO:0009533: chloroplast stromal thylakoid	9.62E-04
11	GO:0000794: condensed nuclear chromosome	9.62E-04
12	GO:0005811: lipid particle	1.26E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.41E-03
14	GO:0043231: intracellular membrane-bounded organelle	1.60E-03
15	GO:0009508: plastid chromosome	2.30E-03
16	GO:0048046: apoplast	2.47E-03
17	GO:0009543: chloroplast thylakoid lumen	2.49E-03
18	GO:0000312: plastid small ribosomal subunit	2.49E-03
19	GO:0009532: plastid stroma	3.54E-03
20	GO:0005871: kinesin complex	4.47E-03
21	GO:0046658: anchored component of plasma membrane	4.52E-03
22	GO:0005874: microtubule	6.32E-03
23	GO:0010319: stromule	6.83E-03
24	GO:0009295: nucleoid	6.83E-03
25	GO:0009505: plant-type cell wall	9.48E-03
26	GO:0005618: cell wall	1.11E-02
27	GO:0010287: plastoglobule	2.25E-02
28	GO:0031225: anchored component of membrane	2.68E-02
29	GO:0005759: mitochondrial matrix	2.75E-02
30	GO:0005615: extracellular space	3.19E-02
31	GO:0022627: cytosolic small ribosomal subunit	3.59E-02
32	GO:0009536: plastid	4.26E-02
33	GO:0031969: chloroplast membrane	4.68E-02