GO Enrichment Analysis of Co-expressed Genes with
AT3G46630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 2 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 3 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 4 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 8.35E-17 |
| 6 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.18E-09 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 1.45E-07 |
| 8 | GO:0009769: photosynthesis, light harvesting in photosystem II | 7.64E-06 |
| 9 | GO:0018298: protein-chromophore linkage | 1.23E-05 |
| 10 | GO:0006824: cobalt ion transport | 3.37E-05 |
| 11 | GO:0016122: xanthophyll metabolic process | 8.48E-05 |
| 12 | GO:0034755: iron ion transmembrane transport | 8.48E-05 |
| 13 | GO:0035436: triose phosphate transmembrane transport | 1.47E-04 |
| 14 | GO:0050482: arachidonic acid secretion | 2.18E-04 |
| 15 | GO:0042938: dipeptide transport | 2.95E-04 |
| 16 | GO:0009765: photosynthesis, light harvesting | 2.95E-04 |
| 17 | GO:0010600: regulation of auxin biosynthetic process | 2.95E-04 |
| 18 | GO:0015713: phosphoglycerate transport | 2.95E-04 |
| 19 | GO:0010117: photoprotection | 3.77E-04 |
| 20 | GO:0009643: photosynthetic acclimation | 4.63E-04 |
| 21 | GO:0009635: response to herbicide | 4.63E-04 |
| 22 | GO:0042549: photosystem II stabilization | 4.63E-04 |
| 23 | GO:0034599: cellular response to oxidative stress | 4.83E-04 |
| 24 | GO:0010189: vitamin E biosynthetic process | 5.53E-04 |
| 25 | GO:0071470: cellular response to osmotic stress | 5.53E-04 |
| 26 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 5.53E-04 |
| 27 | GO:0009644: response to high light intensity | 6.38E-04 |
| 28 | GO:0009645: response to low light intensity stimulus | 6.47E-04 |
| 29 | GO:0010161: red light signaling pathway | 6.47E-04 |
| 30 | GO:0010196: nonphotochemical quenching | 6.47E-04 |
| 31 | GO:0009704: de-etiolation | 7.44E-04 |
| 32 | GO:0006644: phospholipid metabolic process | 7.44E-04 |
| 33 | GO:0010928: regulation of auxin mediated signaling pathway | 7.44E-04 |
| 34 | GO:0009642: response to light intensity | 7.44E-04 |
| 35 | GO:0007186: G-protein coupled receptor signaling pathway | 8.45E-04 |
| 36 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.06E-03 |
| 37 | GO:1900865: chloroplast RNA modification | 1.06E-03 |
| 38 | GO:0055114: oxidation-reduction process | 1.13E-03 |
| 39 | GO:0009688: abscisic acid biosynthetic process | 1.17E-03 |
| 40 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.17E-03 |
| 41 | GO:0043085: positive regulation of catalytic activity | 1.28E-03 |
| 42 | GO:0030148: sphingolipid biosynthetic process | 1.28E-03 |
| 43 | GO:0015706: nitrate transport | 1.40E-03 |
| 44 | GO:0009767: photosynthetic electron transport chain | 1.52E-03 |
| 45 | GO:0006874: cellular calcium ion homeostasis | 2.19E-03 |
| 46 | GO:0009269: response to desiccation | 2.33E-03 |
| 47 | GO:0010017: red or far-red light signaling pathway | 2.48E-03 |
| 48 | GO:0070417: cellular response to cold | 2.94E-03 |
| 49 | GO:0006662: glycerol ether metabolic process | 3.25E-03 |
| 50 | GO:0010193: response to ozone | 3.76E-03 |
| 51 | GO:0045454: cell redox homeostasis | 4.21E-03 |
| 52 | GO:0010218: response to far red light | 6.20E-03 |
| 53 | GO:0006811: ion transport | 6.20E-03 |
| 54 | GO:0010119: regulation of stomatal movement | 6.40E-03 |
| 55 | GO:0007568: aging | 6.40E-03 |
| 56 | GO:0009637: response to blue light | 6.82E-03 |
| 57 | GO:0010114: response to red light | 8.14E-03 |
| 58 | GO:0009735: response to cytokinin | 8.40E-03 |
| 59 | GO:0009416: response to light stimulus | 9.19E-03 |
| 60 | GO:0006812: cation transport | 9.54E-03 |
| 61 | GO:0042538: hyperosmotic salinity response | 9.54E-03 |
| 62 | GO:0009585: red, far-red light phototransduction | 1.00E-02 |
| 63 | GO:0010224: response to UV-B | 1.03E-02 |
| 64 | GO:0006857: oligopeptide transport | 1.05E-02 |
| 65 | GO:0043086: negative regulation of catalytic activity | 1.13E-02 |
| 66 | GO:0009845: seed germination | 1.59E-02 |
| 67 | GO:0008380: RNA splicing | 2.15E-02 |
| 68 | GO:0009409: response to cold | 2.53E-02 |
| 69 | GO:0009658: chloroplast organization | 2.58E-02 |
| 70 | GO:0009723: response to ethylene | 2.87E-02 |
| 71 | GO:0080167: response to karrikin | 3.01E-02 |
| 72 | GO:0044550: secondary metabolite biosynthetic process | 3.20E-02 |
| 73 | GO:0016042: lipid catabolic process | 3.89E-02 |
| 74 | GO:0006629: lipid metabolic process | 3.97E-02 |
| 75 | GO:0008152: metabolic process | 4.26E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 3 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 4 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 5 | GO:0031409: pigment binding | 6.64E-07 |
| 6 | GO:0016168: chlorophyll binding | 8.62E-06 |
| 7 | GO:0052631: sphingolipid delta-8 desaturase activity | 3.37E-05 |
| 8 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 3.37E-05 |
| 9 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 3.37E-05 |
| 10 | GO:0016630: protochlorophyllide reductase activity | 8.48E-05 |
| 11 | GO:0071917: triose-phosphate transmembrane transporter activity | 1.47E-04 |
| 12 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 2.18E-04 |
| 13 | GO:0015120: phosphoglycerate transmembrane transporter activity | 2.95E-04 |
| 14 | GO:0042936: dipeptide transporter activity | 2.95E-04 |
| 15 | GO:0004930: G-protein coupled receptor activity | 2.95E-04 |
| 16 | GO:0004623: phospholipase A2 activity | 3.77E-04 |
| 17 | GO:0004602: glutathione peroxidase activity | 5.53E-04 |
| 18 | GO:0005381: iron ion transmembrane transporter activity | 1.06E-03 |
| 19 | GO:0015035: protein disulfide oxidoreductase activity | 1.13E-03 |
| 20 | GO:0008047: enzyme activator activity | 1.17E-03 |
| 21 | GO:0004864: protein phosphatase inhibitor activity | 1.17E-03 |
| 22 | GO:0004970: ionotropic glutamate receptor activity | 1.78E-03 |
| 23 | GO:0015297: antiporter activity | 1.78E-03 |
| 24 | GO:0005217: intracellular ligand-gated ion channel activity | 1.78E-03 |
| 25 | GO:0005216: ion channel activity | 2.19E-03 |
| 26 | GO:0047134: protein-disulfide reductase activity | 2.94E-03 |
| 27 | GO:0004791: thioredoxin-disulfide reductase activity | 3.42E-03 |
| 28 | GO:0019901: protein kinase binding | 3.59E-03 |
| 29 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.10E-03 |
| 30 | GO:0003993: acid phosphatase activity | 7.04E-03 |
| 31 | GO:0051537: 2 iron, 2 sulfur cluster binding | 8.60E-03 |
| 32 | GO:0043621: protein self-association | 8.60E-03 |
| 33 | GO:0005198: structural molecule activity | 8.82E-03 |
| 34 | GO:0005515: protein binding | 9.54E-03 |
| 35 | GO:0004252: serine-type endopeptidase activity | 1.62E-02 |
| 36 | GO:0046910: pectinesterase inhibitor activity | 1.80E-02 |
| 37 | GO:0005215: transporter activity | 2.07E-02 |
| 38 | GO:0016491: oxidoreductase activity | 2.46E-02 |
| 39 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.62E-02 |
| 40 | GO:0016787: hydrolase activity | 4.00E-02 |
| 41 | GO:0009055: electron carrier activity | 4.18E-02 |
| 42 | GO:0004519: endonuclease activity | 4.22E-02 |
| 43 | GO:0046872: metal ion binding | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.97E-22 |
| 3 | GO:0009534: chloroplast thylakoid | 1.96E-21 |
| 4 | GO:0009941: chloroplast envelope | 8.25E-18 |
| 5 | GO:0009507: chloroplast | 4.92E-13 |
| 6 | GO:0009538: photosystem I reaction center | 8.95E-11 |
| 7 | GO:0010287: plastoglobule | 1.19E-09 |
| 8 | GO:0009579: thylakoid | 1.47E-09 |
| 9 | GO:0009522: photosystem I | 3.03E-08 |
| 10 | GO:0009517: PSII associated light-harvesting complex II | 1.41E-06 |
| 11 | GO:0009523: photosystem II | 3.66E-06 |
| 12 | GO:0009783: photosystem II antenna complex | 3.37E-05 |
| 13 | GO:0030076: light-harvesting complex | 5.51E-05 |
| 14 | GO:0016021: integral component of membrane | 1.26E-04 |
| 15 | GO:0031969: chloroplast membrane | 4.00E-04 |
| 16 | GO:0016020: membrane | 4.75E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 1.65E-03 |
| 18 | GO:0042651: thylakoid membrane | 2.19E-03 |
| 19 | GO:0031410: cytoplasmic vesicle | 2.48E-03 |
| 20 | GO:0009707: chloroplast outer membrane | 5.79E-03 |
| 21 | GO:0009570: chloroplast stroma | 9.13E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 1.28E-02 |
| 23 | GO:0009543: chloroplast thylakoid lumen | 1.51E-02 |
| 24 | GO:0005623: cell | 1.54E-02 |