GO Enrichment Analysis of Co-expressed Genes with
AT3G46560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 3 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 4 | GO:0071433: cell wall repair | 0.00E+00 |
| 5 | GO:0006412: translation | 2.37E-15 |
| 6 | GO:0000027: ribosomal large subunit assembly | 1.59E-08 |
| 7 | GO:0042254: ribosome biogenesis | 2.72E-06 |
| 8 | GO:0006364: rRNA processing | 3.44E-06 |
| 9 | GO:0031167: rRNA methylation | 4.70E-06 |
| 10 | GO:0001510: RNA methylation | 2.48E-05 |
| 11 | GO:0009609: response to symbiotic bacterium | 5.03E-05 |
| 12 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 5.03E-05 |
| 13 | GO:0046686: response to cadmium ion | 7.17E-05 |
| 14 | GO:0006626: protein targeting to mitochondrion | 7.50E-05 |
| 15 | GO:0006123: mitochondrial electron transport, cytochrome c to oxygen | 1.23E-04 |
| 16 | GO:0045039: protein import into mitochondrial inner membrane | 2.11E-04 |
| 17 | GO:1902626: assembly of large subunit precursor of preribosome | 2.11E-04 |
| 18 | GO:0008033: tRNA processing | 2.41E-04 |
| 19 | GO:0043207: response to external biotic stimulus | 3.09E-04 |
| 20 | GO:0009855: determination of bilateral symmetry | 3.09E-04 |
| 21 | GO:0032502: developmental process | 3.45E-04 |
| 22 | GO:0042273: ribosomal large subunit biogenesis | 4.15E-04 |
| 23 | GO:0071493: cellular response to UV-B | 5.26E-04 |
| 24 | GO:0009423: chorismate biosynthetic process | 7.68E-04 |
| 25 | GO:0080186: developmental vegetative growth | 8.97E-04 |
| 26 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 8.97E-04 |
| 27 | GO:0009610: response to symbiotic fungus | 8.97E-04 |
| 28 | GO:0051707: response to other organism | 9.61E-04 |
| 29 | GO:0006605: protein targeting | 1.03E-03 |
| 30 | GO:0000028: ribosomal small subunit assembly | 1.03E-03 |
| 31 | GO:0050821: protein stabilization | 1.03E-03 |
| 32 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.03E-03 |
| 33 | GO:0006102: isocitrate metabolic process | 1.03E-03 |
| 34 | GO:0010224: response to UV-B | 1.32E-03 |
| 35 | GO:0010162: seed dormancy process | 1.63E-03 |
| 36 | GO:0009073: aromatic amino acid family biosynthetic process | 1.79E-03 |
| 37 | GO:0006820: anion transport | 1.96E-03 |
| 38 | GO:0048467: gynoecium development | 2.32E-03 |
| 39 | GO:0030150: protein import into mitochondrial matrix | 2.88E-03 |
| 40 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.88E-03 |
| 41 | GO:0006334: nucleosome assembly | 3.29E-03 |
| 42 | GO:0015992: proton transport | 3.29E-03 |
| 43 | GO:0009294: DNA mediated transformation | 3.71E-03 |
| 44 | GO:0009960: endosperm development | 4.60E-03 |
| 45 | GO:0010197: polar nucleus fusion | 4.60E-03 |
| 46 | GO:0015986: ATP synthesis coupled proton transport | 4.83E-03 |
| 47 | GO:0009615: response to virus | 6.85E-03 |
| 48 | GO:0009627: systemic acquired resistance | 7.40E-03 |
| 49 | GO:0006811: ion transport | 8.82E-03 |
| 50 | GO:0010043: response to zinc ion | 9.12E-03 |
| 51 | GO:0006099: tricarboxylic acid cycle | 1.00E-02 |
| 52 | GO:0006839: mitochondrial transport | 1.07E-02 |
| 53 | GO:0008283: cell proliferation | 1.16E-02 |
| 54 | GO:0000154: rRNA modification | 1.26E-02 |
| 55 | GO:0009626: plant-type hypersensitive response | 1.69E-02 |
| 56 | GO:0009620: response to fungus | 1.73E-02 |
| 57 | GO:0016569: covalent chromatin modification | 1.77E-02 |
| 58 | GO:0009793: embryo development ending in seed dormancy | 1.79E-02 |
| 59 | GO:0009553: embryo sac development | 1.80E-02 |
| 60 | GO:0006413: translational initiation | 2.59E-02 |
| 61 | GO:0009451: RNA modification | 2.76E-02 |
| 62 | GO:0009651: response to salt stress | 2.86E-02 |
| 63 | GO:0009617: response to bacterium | 3.08E-02 |
| 64 | GO:0006979: response to oxidative stress | 3.14E-02 |
| 65 | GO:0009723: response to ethylene | 4.12E-02 |
| 66 | GO:0045454: cell redox homeostasis | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 2 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0003735: structural constituent of ribosome | 9.89E-19 |
| 5 | GO:0030515: snoRNA binding | 6.47E-08 |
| 6 | GO:0008649: rRNA methyltransferase activity | 5.94E-07 |
| 7 | GO:0005507: copper ion binding | 9.76E-05 |
| 8 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.11E-04 |
| 9 | GO:0070180: large ribosomal subunit rRNA binding | 2.11E-04 |
| 10 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 3.09E-04 |
| 11 | GO:0003729: mRNA binding | 4.23E-04 |
| 12 | GO:0003723: RNA binding | 5.93E-04 |
| 13 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.02E-04 |
| 14 | GO:0050897: cobalt ion binding | 6.92E-04 |
| 15 | GO:0004017: adenylate kinase activity | 7.68E-04 |
| 16 | GO:0015288: porin activity | 1.03E-03 |
| 17 | GO:0008308: voltage-gated anion channel activity | 1.17E-03 |
| 18 | GO:0015114: phosphate ion transmembrane transporter activity | 2.14E-03 |
| 19 | GO:0015266: protein channel activity | 2.14E-03 |
| 20 | GO:0008266: poly(U) RNA binding | 2.32E-03 |
| 21 | GO:0004407: histone deacetylase activity | 2.88E-03 |
| 22 | GO:0005528: FK506 binding | 2.88E-03 |
| 23 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 4.60E-03 |
| 24 | GO:0010181: FMN binding | 4.83E-03 |
| 25 | GO:0050660: flavin adenine dinucleotide binding | 5.46E-03 |
| 26 | GO:0008237: metallopeptidase activity | 6.33E-03 |
| 27 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 9.12E-03 |
| 28 | GO:0009055: electron carrier activity | 9.26E-03 |
| 29 | GO:0003746: translation elongation factor activity | 9.73E-03 |
| 30 | GO:0042393: histone binding | 1.07E-02 |
| 31 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.30E-02 |
| 32 | GO:0051287: NAD binding | 1.33E-02 |
| 33 | GO:0000166: nucleotide binding | 1.54E-02 |
| 34 | GO:0051082: unfolded protein binding | 1.84E-02 |
| 35 | GO:0019843: rRNA binding | 2.16E-02 |
| 36 | GO:0008565: protein transporter activity | 2.46E-02 |
| 37 | GO:0005509: calcium ion binding | 2.88E-02 |
| 38 | GO:0003743: translation initiation factor activity | 3.04E-02 |
| 39 | GO:0008168: methyltransferase activity | 3.61E-02 |
| 40 | GO:0000287: magnesium ion binding | 3.66E-02 |
| 41 | GO:0008233: peptidase activity | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 6.73E-21 |
| 3 | GO:0022625: cytosolic large ribosomal subunit | 3.38E-12 |
| 4 | GO:0022626: cytosolic ribosome | 5.37E-12 |
| 5 | GO:0005840: ribosome | 1.10E-11 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 1.27E-09 |
| 7 | GO:0031428: box C/D snoRNP complex | 2.20E-08 |
| 8 | GO:0005773: vacuole | 6.03E-07 |
| 9 | GO:0032040: small-subunit processome | 6.87E-07 |
| 10 | GO:0015934: large ribosomal subunit | 8.21E-07 |
| 11 | GO:0005774: vacuolar membrane | 1.06E-05 |
| 12 | GO:0005742: mitochondrial outer membrane translocase complex | 2.48E-05 |
| 13 | GO:0015030: Cajal body | 3.83E-05 |
| 14 | GO:0005739: mitochondrion | 5.38E-05 |
| 15 | GO:0005829: cytosol | 1.21E-04 |
| 16 | GO:0005758: mitochondrial intermembrane space | 1.25E-04 |
| 17 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 4.15E-04 |
| 18 | GO:0009506: plasmodesma | 5.57E-04 |
| 19 | GO:0005618: cell wall | 5.70E-04 |
| 20 | GO:0005743: mitochondrial inner membrane | 1.13E-03 |
| 21 | GO:0046930: pore complex | 1.17E-03 |
| 22 | GO:0005747: mitochondrial respiratory chain complex I | 1.55E-03 |
| 23 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.79E-03 |
| 24 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 2.50E-03 |
| 25 | GO:0070469: respiratory chain | 3.08E-03 |
| 26 | GO:0015935: small ribosomal subunit | 3.29E-03 |
| 27 | GO:0005741: mitochondrial outer membrane | 3.29E-03 |
| 28 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 5.18E-03 |
| 29 | GO:0016592: mediator complex | 5.56E-03 |
| 30 | GO:0005737: cytoplasm | 6.02E-03 |
| 31 | GO:0005788: endoplasmic reticulum lumen | 7.12E-03 |
| 32 | GO:0048046: apoplast | 8.22E-03 |
| 33 | GO:0016020: membrane | 1.50E-02 |
| 34 | GO:0005834: heterotrimeric G-protein complex | 1.69E-02 |
| 35 | GO:0005783: endoplasmic reticulum | 2.19E-02 |
| 36 | GO:0005623: cell | 2.20E-02 |
| 37 | GO:0005759: mitochondrial matrix | 2.54E-02 |
| 38 | GO:0005789: endoplasmic reticulum membrane | 4.74E-02 |