co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070482: response to oxygen levels	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
4	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
5	GO:0000390: spliceosomal complex disassembly	0.00E+00
6	GO:0046109: uridine biosynthetic process	0.00E+00
7	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0019484: beta-alanine catabolic process	0.00E+00
10	GO:0035269: protein O-linked mannosylation	0.00E+00
11	GO:0010111: glyoxysome organization	0.00E+00
12	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
13	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
14	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
15	GO:0006105: succinate metabolic process	0.00E+00
16	GO:0048364: root development	8.43E-05
17	GO:0009415: response to water	1.40E-04
18	GO:0006635: fatty acid beta-oxidation	1.44E-04
19	GO:0098702: adenine import across plasma membrane	1.80E-04
20	GO:0035344: hypoxanthine transport	1.80E-04
21	GO:0009450: gamma-aminobutyric acid catabolic process	1.80E-04
22	GO:0046167: glycerol-3-phosphate biosynthetic process	1.80E-04
23	GO:0007292: female gamete generation	1.80E-04
24	GO:0035266: meristem growth	1.80E-04
25	GO:0098710: guanine import across plasma membrane	1.80E-04
26	GO:0009865: pollen tube adhesion	1.80E-04
27	GO:0006540: glutamate decarboxylation to succinate	1.80E-04
28	GO:0010265: SCF complex assembly	1.80E-04
29	GO:0098721: uracil import across plasma membrane	1.80E-04
30	GO:0010184: cytokinin transport	1.80E-04
31	GO:0048829: root cap development	3.00E-04
32	GO:0007584: response to nutrient	4.05E-04
33	GO:0019395: fatty acid oxidation	4.05E-04
34	GO:0030010: establishment of cell polarity	4.05E-04
35	GO:0051788: response to misfolded protein	4.05E-04
36	GO:0010033: response to organic substance	4.05E-04
37	GO:0051258: protein polymerization	4.05E-04
38	GO:0050684: regulation of mRNA processing	4.05E-04
39	GO:0006641: triglyceride metabolic process	4.05E-04
40	GO:0019563: glycerol catabolic process	6.61E-04
41	GO:0032784: regulation of DNA-templated transcription, elongation	6.61E-04
42	GO:0060968: regulation of gene silencing	6.61E-04
43	GO:0009695: jasmonic acid biosynthetic process	7.77E-04
44	GO:0046686: response to cadmium ion	8.25E-04
45	GO:0006882: cellular zinc ion homeostasis	9.45E-04
46	GO:0009399: nitrogen fixation	9.45E-04
47	GO:0006020: inositol metabolic process	9.45E-04
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.45E-04
49	GO:0048194: Golgi vesicle budding	9.45E-04
50	GO:0006072: glycerol-3-phosphate metabolic process	9.45E-04
51	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.18E-03
52	GO:0048367: shoot system development	1.20E-03
53	GO:0006979: response to oxidative stress	1.21E-03
54	GO:0006646: phosphatidylethanolamine biosynthetic process	1.25E-03
55	GO:0010107: potassium ion import	1.25E-03
56	GO:0006536: glutamate metabolic process	1.25E-03
57	GO:0010188: response to microbial phytotoxin	1.25E-03
58	GO:0042273: ribosomal large subunit biogenesis	1.25E-03
59	GO:0006878: cellular copper ion homeostasis	1.25E-03
60	GO:0046777: protein autophosphorylation	1.41E-03
61	GO:0042752: regulation of circadian rhythm	1.47E-03
62	GO:0007029: endoplasmic reticulum organization	1.59E-03
63	GO:0043097: pyrimidine nucleoside salvage	1.59E-03
64	GO:0098719: sodium ion import across plasma membrane	1.59E-03
65	GO:0005513: detection of calcium ion	1.59E-03
66	GO:0006891: intra-Golgi vesicle-mediated transport	1.68E-03
67	GO:0006206: pyrimidine nucleobase metabolic process	1.96E-03
68	GO:0048827: phyllome development	1.96E-03
69	GO:0048232: male gamete generation	1.96E-03
70	GO:0043248: proteasome assembly	1.96E-03
71	GO:0010358: leaf shaping	1.96E-03
72	GO:0006014: D-ribose metabolic process	1.96E-03
73	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.96E-03
74	GO:0009845: seed germination	2.13E-03
75	GO:0009612: response to mechanical stimulus	2.35E-03
76	GO:0048280: vesicle fusion with Golgi apparatus	2.35E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.77E-03
78	GO:0098869: cellular oxidant detoxification	2.77E-03
79	GO:0046470: phosphatidylcholine metabolic process	2.77E-03
80	GO:0006401: RNA catabolic process	2.77E-03
81	GO:0006491: N-glycan processing	3.21E-03
82	GO:0006506: GPI anchor biosynthetic process	3.21E-03
83	GO:0006605: protein targeting	3.21E-03
84	GO:0010078: maintenance of root meristem identity	3.21E-03
85	GO:0010311: lateral root formation	3.30E-03
86	GO:0006499: N-terminal protein myristoylation	3.47E-03
87	GO:0010119: regulation of stomatal movement	3.63E-03
88	GO:0030968: endoplasmic reticulum unfolded protein response	3.67E-03
89	GO:0048193: Golgi vesicle transport	3.67E-03
90	GO:0006002: fructose 6-phosphate metabolic process	3.67E-03
91	GO:0006972: hyperosmotic response	3.67E-03
92	GO:0009880: embryonic pattern specification	3.67E-03
93	GO:0045087: innate immune response	3.98E-03
94	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.15E-03
95	GO:0009051: pentose-phosphate shunt, oxidative branch	4.15E-03
96	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.65E-03
97	GO:0042761: very long-chain fatty acid biosynthetic process	4.65E-03
98	GO:0051453: regulation of intracellular pH	4.65E-03
99	GO:0008202: steroid metabolic process	4.65E-03
100	GO:0006896: Golgi to vacuole transport	5.18E-03
101	GO:0010629: negative regulation of gene expression	5.18E-03
102	GO:0006535: cysteine biosynthetic process from serine	5.18E-03
103	GO:0010015: root morphogenesis	5.72E-03
104	GO:0035556: intracellular signal transduction	5.99E-03
105	GO:0071365: cellular response to auxin stimulus	6.28E-03
106	GO:0010102: lateral root morphogenesis	6.86E-03
107	GO:0006006: glucose metabolic process	6.86E-03
108	GO:0006486: protein glycosylation	6.90E-03
109	GO:0002237: response to molecule of bacterial origin	7.46E-03
110	GO:0009933: meristem structural organization	7.46E-03
111	GO:0048467: gynoecium development	7.46E-03
112	GO:0006541: glutamine metabolic process	7.46E-03
113	GO:0090351: seedling development	8.08E-03
114	GO:0010167: response to nitrate	8.08E-03
115	GO:0005985: sucrose metabolic process	8.08E-03
116	GO:0006863: purine nucleobase transport	8.71E-03
117	GO:0034976: response to endoplasmic reticulum stress	8.71E-03
118	GO:0000162: tryptophan biosynthetic process	8.71E-03
119	GO:0019344: cysteine biosynthetic process	9.37E-03
120	GO:0006825: copper ion transport	1.00E-02
121	GO:0018105: peptidyl-serine phosphorylation	1.01E-02
122	GO:0031408: oxylipin biosynthetic process	1.07E-02
123	GO:0061077: chaperone-mediated protein folding	1.07E-02
124	GO:0009269: response to desiccation	1.07E-02
125	GO:0030433: ubiquitin-dependent ERAD pathway	1.14E-02
126	GO:0006397: mRNA processing	1.15E-02
127	GO:0042147: retrograde transport, endosome to Golgi	1.37E-02
128	GO:0000413: protein peptidyl-prolyl isomerization	1.44E-02
129	GO:0010051: xylem and phloem pattern formation	1.44E-02
130	GO:0010087: phloem or xylem histogenesis	1.44E-02
131	GO:0010118: stomatal movement	1.44E-02
132	GO:0009790: embryo development	1.44E-02
133	GO:0009873: ethylene-activated signaling pathway	1.51E-02
134	GO:0010154: fruit development	1.52E-02
135	GO:0006814: sodium ion transport	1.60E-02
136	GO:0009737: response to abscisic acid	1.65E-02
137	GO:0019252: starch biosynthetic process	1.68E-02
138	GO:0008654: phospholipid biosynthetic process	1.68E-02
139	GO:0009749: response to glucose	1.68E-02
140	GO:0006623: protein targeting to vacuole	1.68E-02
141	GO:0010183: pollen tube guidance	1.68E-02
142	GO:0009734: auxin-activated signaling pathway	1.68E-02
143	GO:0071554: cell wall organization or biogenesis	1.77E-02
144	GO:0010583: response to cyclopentenone	1.85E-02
145	GO:0009630: gravitropism	1.85E-02
146	GO:0006464: cellular protein modification process	2.03E-02
147	GO:0006914: autophagy	2.03E-02
148	GO:0008380: RNA splicing	2.04E-02
149	GO:0009617: response to bacterium	2.04E-02
150	GO:0071805: potassium ion transmembrane transport	2.11E-02
151	GO:0009738: abscisic acid-activated signaling pathway	2.16E-02
152	GO:0051607: defense response to virus	2.20E-02
153	GO:0001666: response to hypoxia	2.30E-02
154	GO:0009611: response to wounding	2.31E-02
155	GO:0010029: regulation of seed germination	2.39E-02
156	GO:0009816: defense response to bacterium, incompatible interaction	2.39E-02
157	GO:0006950: response to stress	2.58E-02
158	GO:0006888: ER to Golgi vesicle-mediated transport	2.58E-02
159	GO:0048573: photoperiodism, flowering	2.58E-02
160	GO:0030244: cellulose biosynthetic process	2.77E-02
161	GO:0006810: transport	2.83E-02
162	GO:0006970: response to osmotic stress	2.85E-02
163	GO:0006811: ion transport	2.97E-02
164	GO:0048527: lateral root development	3.08E-02
165	GO:0009631: cold acclimation	3.08E-02
166	GO:0010043: response to zinc ion	3.08E-02
167	GO:0080167: response to karrikin	3.27E-02
168	GO:0009867: jasmonic acid mediated signaling pathway	3.28E-02
169	GO:0016051: carbohydrate biosynthetic process	3.28E-02
170	GO:0006511: ubiquitin-dependent protein catabolic process	3.30E-02
171	GO:0006099: tricarboxylic acid cycle	3.39E-02
172	GO:0016192: vesicle-mediated transport	3.44E-02
173	GO:0006631: fatty acid metabolic process	3.71E-02
174	GO:0045454: cell redox homeostasis	3.91E-02
175	GO:0009965: leaf morphogenesis	4.27E-02
176	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.50E-02
177	GO:0031347: regulation of defense response	4.50E-02
178	GO:0007165: signal transduction	4.69E-02
179	GO:0009736: cytokinin-activated signaling pathway	4.86E-02
180	GO:0010224: response to UV-B	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:1990446: U1 snRNP binding	0.00E+00
4	GO:0005548: phospholipid transporter activity	0.00E+00
5	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
6	GO:0004370: glycerol kinase activity	0.00E+00
7	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
8	GO:0008901: ferredoxin hydrogenase activity	0.00E+00
9	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.69E-05
10	GO:0004012: phospholipid-translocating ATPase activity	8.20E-05
11	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.40E-04
12	GO:0015294: solute:cation symporter activity	1.80E-04
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.80E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	1.80E-04
15	GO:0035671: enone reductase activity	1.80E-04
16	GO:0015207: adenine transmembrane transporter activity	1.80E-04
17	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.80E-04
18	GO:0015208: guanine transmembrane transporter activity	1.80E-04
19	GO:0003988: acetyl-CoA C-acyltransferase activity	4.05E-04
20	GO:0004609: phosphatidylserine decarboxylase activity	4.05E-04
21	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	4.05E-04
22	GO:0019200: carbohydrate kinase activity	4.05E-04
23	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	4.05E-04
24	GO:0004839: ubiquitin activating enzyme activity	4.05E-04
25	GO:0004180: carboxypeptidase activity	6.61E-04
26	GO:0005047: signal recognition particle binding	6.61E-04
27	GO:0004751: ribose-5-phosphate isomerase activity	6.61E-04
28	GO:0019829: cation-transporting ATPase activity	6.61E-04
29	GO:0004383: guanylate cyclase activity	6.61E-04
30	GO:0005524: ATP binding	8.48E-04
31	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.45E-04
32	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.45E-04
33	GO:0004300: enoyl-CoA hydratase activity	9.45E-04
34	GO:0004108: citrate (Si)-synthase activity	9.45E-04
35	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	9.45E-04
36	GO:0001653: peptide receptor activity	9.45E-04
37	GO:0005509: calcium ion binding	1.02E-03
38	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.25E-03
39	GO:0004834: tryptophan synthase activity	1.25E-03
40	GO:0043015: gamma-tubulin binding	1.25E-03
41	GO:0015210: uracil transmembrane transporter activity	1.25E-03
42	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.59E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.59E-03
44	GO:0008641: small protein activating enzyme activity	1.59E-03
45	GO:0005496: steroid binding	1.59E-03
46	GO:0036402: proteasome-activating ATPase activity	1.96E-03
47	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.35E-03
48	GO:0004747: ribokinase activity	2.35E-03
49	GO:0004559: alpha-mannosidase activity	2.35E-03
50	GO:0004124: cysteine synthase activity	2.35E-03
51	GO:0004849: uridine kinase activity	2.35E-03
52	GO:0003730: mRNA 3'-UTR binding	2.35E-03
53	GO:0004602: glutathione peroxidase activity	2.35E-03
54	GO:0003729: mRNA binding	2.61E-03
55	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.70E-03
56	GO:0004620: phospholipase activity	2.77E-03
57	GO:0003872: 6-phosphofructokinase activity	2.77E-03
58	GO:0004683: calmodulin-dependent protein kinase activity	2.84E-03
59	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.21E-03
60	GO:0008865: fructokinase activity	3.21E-03
61	GO:0004525: ribonuclease III activity	3.21E-03
62	GO:0005096: GTPase activator activity	3.30E-03
63	GO:0050897: cobalt ion binding	3.63E-03
64	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.67E-03
65	GO:0005375: copper ion transmembrane transporter activity	3.67E-03
66	GO:0004630: phospholipase D activity	3.67E-03
67	GO:0005267: potassium channel activity	3.67E-03
68	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.15E-03
69	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.65E-03
70	GO:0004713: protein tyrosine kinase activity	5.18E-03
71	GO:0015386: potassium:proton antiporter activity	5.72E-03
72	GO:0005515: protein binding	5.75E-03
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.98E-03
74	GO:0004521: endoribonuclease activity	6.28E-03
75	GO:0004867: serine-type endopeptidase inhibitor activity	8.08E-03
76	GO:0017025: TBP-class protein binding	8.08E-03
77	GO:0043130: ubiquitin binding	9.37E-03
78	GO:0005528: FK506 binding	9.37E-03
79	GO:0043424: protein histidine kinase binding	1.00E-02
80	GO:0005345: purine nucleobase transmembrane transporter activity	1.00E-02
81	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.27E-02
82	GO:0003756: protein disulfide isomerase activity	1.29E-02
83	GO:0030170: pyridoxal phosphate binding	1.37E-02
84	GO:0016853: isomerase activity	1.60E-02
85	GO:0004872: receptor activity	1.68E-02
86	GO:0004518: nuclease activity	1.85E-02
87	GO:0016887: ATPase activity	1.90E-02
88	GO:0015385: sodium:proton antiporter activity	1.94E-02
89	GO:0016413: O-acetyltransferase activity	2.20E-02
90	GO:0004004: ATP-dependent RNA helicase activity	2.58E-02
91	GO:0000287: magnesium ion binding	2.59E-02
92	GO:0004674: protein serine/threonine kinase activity	2.65E-02
93	GO:0008236: serine-type peptidase activity	2.68E-02
94	GO:0004672: protein kinase activity	2.83E-02
95	GO:0004497: monooxygenase activity	3.27E-02
96	GO:0005507: copper ion binding	3.49E-02
97	GO:0000149: SNARE binding	3.50E-02
98	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.50E-02
99	GO:0050661: NADP binding	3.60E-02
100	GO:0051539: 4 iron, 4 sulfur cluster binding	3.60E-02
101	GO:0005516: calmodulin binding	3.74E-02
102	GO:0005484: SNAP receptor activity	3.93E-02
103	GO:0043621: protein self-association	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0005783: endoplasmic reticulum	2.19E-07
5	GO:0005829: cytosol	2.00E-05
6	GO:0005794: Golgi apparatus	5.76E-05
7	GO:0005802: trans-Golgi network	1.70E-04
8	GO:0005789: endoplasmic reticulum membrane	2.06E-04
9	GO:0005768: endosome	2.34E-04
10	GO:0033185: dolichol-phosphate-mannose synthase complex	4.05E-04
11	GO:0005774: vacuolar membrane	5.08E-04
12	GO:0031902: late endosome membrane	5.83E-04
13	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.61E-04
14	GO:0031461: cullin-RING ubiquitin ligase complex	9.45E-04
15	GO:0010008: endosome membrane	1.20E-03
16	GO:0005945: 6-phosphofructokinase complex	1.59E-03
17	GO:0030140: trans-Golgi network transport vesicle	1.96E-03
18	GO:0031597: cytosolic proteasome complex	2.35E-03
19	GO:0016363: nuclear matrix	2.35E-03
20	GO:0030173: integral component of Golgi membrane	2.35E-03
21	GO:0005737: cytoplasm	2.73E-03
22	GO:0000794: condensed nuclear chromosome	2.77E-03
23	GO:0031595: nuclear proteasome complex	2.77E-03
24	GO:0030687: preribosome, large subunit precursor	2.77E-03
25	GO:0012507: ER to Golgi transport vesicle membrane	3.21E-03
26	GO:0009514: glyoxysome	3.67E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.67E-03
28	GO:0008540: proteasome regulatory particle, base subcomplex	4.65E-03
29	GO:0016021: integral component of membrane	4.95E-03
30	GO:0005886: plasma membrane	6.26E-03
31	GO:0000139: Golgi membrane	7.56E-03
32	GO:0005773: vacuole	1.17E-02
33	GO:0030136: clathrin-coated vesicle	1.37E-02
34	GO:0005770: late endosome	1.52E-02
35	GO:0032580: Golgi cisterna membrane	2.03E-02
36	GO:0005788: endoplasmic reticulum lumen	2.39E-02
37	GO:0005777: peroxisome	2.67E-02
38	GO:0000151: ubiquitin ligase complex	2.77E-02
39	GO:0000325: plant-type vacuole	3.08E-02
40	GO:0009506: plasmodesma	3.46E-02
41	GO:0005819: spindle	3.50E-02
42	GO:0031201: SNARE complex	3.71E-02
43	GO:0005622: intracellular	4.58E-02
44	GO:0031966: mitochondrial membrane	4.62E-02
45	GO:0000502: proteasome complex	4.86E-02