co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070584: mitochondrion morphogenesis	0.00E+00
2	GO:0071311: cellular response to acetate	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0070979: protein K11-linked ubiquitination	0.00E+00
5	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
6	GO:0071260: cellular response to mechanical stimulus	0.00E+00
7	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
8	GO:0046677: response to antibiotic	0.00E+00
9	GO:0030644: cellular chloride ion homeostasis	0.00E+00
10	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
11	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
12	GO:0009768: photosynthesis, light harvesting in photosystem I	2.33E-16
13	GO:0015979: photosynthesis	6.51E-12
14	GO:0018298: protein-chromophore linkage	2.57E-11
15	GO:0009645: response to low light intensity stimulus	1.61E-08
16	GO:0010114: response to red light	2.57E-07
17	GO:0009644: response to high light intensity	3.30E-07
18	GO:0010218: response to far red light	2.28E-06
19	GO:0009416: response to light stimulus	1.48E-05
20	GO:0015995: chlorophyll biosynthetic process	3.26E-05
21	GO:0009637: response to blue light	6.31E-05
22	GO:0010196: nonphotochemical quenching	1.47E-04
23	GO:0009769: photosynthesis, light harvesting in photosystem II	1.47E-04
24	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.18E-04
25	GO:0080173: male-female gamete recognition during double fertilization	2.18E-04
26	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.18E-04
27	GO:0015812: gamma-aminobutyric acid transport	2.18E-04
28	GO:0032958: inositol phosphate biosynthetic process	2.18E-04
29	GO:0006475: internal protein amino acid acetylation	2.18E-04
30	GO:0006474: N-terminal protein amino acid acetylation	2.18E-04
31	GO:0017198: N-terminal peptidyl-serine acetylation	2.18E-04
32	GO:0009409: response to cold	3.12E-04
33	GO:0006883: cellular sodium ion homeostasis	4.86E-04
34	GO:1902884: positive regulation of response to oxidative stress	4.86E-04
35	GO:0051170: nuclear import	4.86E-04
36	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.86E-04
37	GO:0007623: circadian rhythm	7.25E-04
38	GO:1902448: positive regulation of shade avoidance	7.90E-04
39	GO:0006598: polyamine catabolic process	7.90E-04
40	GO:0071230: cellular response to amino acid stimulus	7.90E-04
41	GO:0031145: anaphase-promoting complex-dependent catabolic process	7.90E-04
42	GO:1901562: response to paraquat	7.90E-04
43	GO:0055114: oxidation-reduction process	8.23E-04
44	GO:0009640: photomorphogenesis	9.07E-04
45	GO:0006874: cellular calcium ion homeostasis	1.01E-03
46	GO:0048511: rhythmic process	1.10E-03
47	GO:0003333: amino acid transmembrane transport	1.10E-03
48	GO:0006020: inositol metabolic process	1.13E-03
49	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.13E-03
50	GO:1901000: regulation of response to salt stress	1.13E-03
51	GO:0044211: CTP salvage	1.13E-03
52	GO:0030100: regulation of endocytosis	1.13E-03
53	GO:0010017: red or far-red light signaling pathway	1.20E-03
54	GO:0009765: photosynthesis, light harvesting	1.50E-03
55	GO:2000306: positive regulation of photomorphogenesis	1.50E-03
56	GO:0010600: regulation of auxin biosynthetic process	1.50E-03
57	GO:1901002: positive regulation of response to salt stress	1.50E-03
58	GO:0015846: polyamine transport	1.50E-03
59	GO:0030104: water homeostasis	1.50E-03
60	GO:0044206: UMP salvage	1.50E-03
61	GO:0070417: cellular response to cold	1.54E-03
62	GO:0009723: response to ethylene	1.74E-03
63	GO:0006461: protein complex assembly	1.91E-03
64	GO:0016123: xanthophyll biosynthetic process	1.91E-03
65	GO:0032876: negative regulation of DNA endoreduplication	1.91E-03
66	GO:0043097: pyrimidine nucleoside salvage	1.91E-03
67	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.35E-03
68	GO:0045962: positive regulation of development, heterochronic	2.35E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	2.35E-03
70	GO:0000060: protein import into nucleus, translocation	2.35E-03
71	GO:0009635: response to herbicide	2.35E-03
72	GO:1901657: glycosyl compound metabolic process	2.50E-03
73	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.83E-03
74	GO:0010077: maintenance of inflorescence meristem identity	2.83E-03
75	GO:0071470: cellular response to osmotic stress	2.83E-03
76	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.83E-03
77	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.83E-03
78	GO:0010161: red light signaling pathway	3.33E-03
79	GO:0009408: response to heat	3.50E-03
80	GO:0010928: regulation of auxin mediated signaling pathway	3.86E-03
81	GO:0009642: response to light intensity	3.86E-03
82	GO:0010078: maintenance of root meristem identity	3.86E-03
83	GO:0009704: de-etiolation	3.86E-03
84	GO:0032875: regulation of DNA endoreduplication	3.86E-03
85	GO:0050821: protein stabilization	3.86E-03
86	GO:0006351: transcription, DNA-templated	4.23E-03
87	GO:0000160: phosphorelay signal transduction system	4.33E-03
88	GO:0010099: regulation of photomorphogenesis	4.42E-03
89	GO:0009827: plant-type cell wall modification	4.42E-03
90	GO:0007186: G-protein coupled receptor signaling pathway	4.42E-03
91	GO:0010206: photosystem II repair	5.00E-03
92	GO:0048507: meristem development	5.00E-03
93	GO:0090333: regulation of stomatal closure	5.00E-03
94	GO:0030042: actin filament depolymerization	5.62E-03
95	GO:0042761: very long-chain fatty acid biosynthetic process	5.62E-03
96	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.62E-03
97	GO:0008356: asymmetric cell division	5.62E-03
98	GO:0009641: shade avoidance	6.25E-03
99	GO:0010162: seed dormancy process	6.25E-03
100	GO:0006535: cysteine biosynthetic process from serine	6.25E-03
101	GO:0009688: abscisic acid biosynthetic process	6.25E-03
102	GO:0030148: sphingolipid biosynthetic process	6.91E-03
103	GO:0046856: phosphatidylinositol dephosphorylation	6.91E-03
104	GO:0006816: calcium ion transport	6.91E-03
105	GO:0043085: positive regulation of catalytic activity	6.91E-03
106	GO:0008643: carbohydrate transport	7.28E-03
107	GO:0050826: response to freezing	8.30E-03
108	GO:0018107: peptidyl-threonine phosphorylation	8.30E-03
109	GO:0009718: anthocyanin-containing compound biosynthetic process	8.30E-03
110	GO:0009767: photosynthetic electron transport chain	8.30E-03
111	GO:0006812: cation transport	8.45E-03
112	GO:0009887: animal organ morphogenesis	9.03E-03
113	GO:0009266: response to temperature stimulus	9.03E-03
114	GO:0010207: photosystem II assembly	9.03E-03
115	GO:0007015: actin filament organization	9.03E-03
116	GO:0080167: response to karrikin	9.40E-03
117	GO:0019853: L-ascorbic acid biosynthetic process	9.79E-03
118	GO:0090351: seedling development	9.79E-03
119	GO:0009909: regulation of flower development	1.01E-02
120	GO:0044550: secondary metabolite biosynthetic process	1.05E-02
121	GO:0006636: unsaturated fatty acid biosynthetic process	1.06E-02
122	GO:0006355: regulation of transcription, DNA-templated	1.11E-02
123	GO:0019344: cysteine biosynthetic process	1.14E-02
124	GO:0010431: seed maturation	1.30E-02
125	GO:0061077: chaperone-mediated protein folding	1.30E-02
126	GO:0009269: response to desiccation	1.30E-02
127	GO:0006012: galactose metabolic process	1.48E-02
128	GO:0071215: cellular response to abscisic acid stimulus	1.48E-02
129	GO:0009686: gibberellin biosynthetic process	1.48E-02
130	GO:0006629: lipid metabolic process	1.54E-02
131	GO:0019722: calcium-mediated signaling	1.57E-02
132	GO:0034220: ion transmembrane transport	1.75E-02
133	GO:0010087: phloem or xylem histogenesis	1.75E-02
134	GO:0010305: leaf vascular tissue pattern formation	1.85E-02
135	GO:0006662: glycerol ether metabolic process	1.85E-02
136	GO:0010182: sugar mediated signaling pathway	1.85E-02
137	GO:0006814: sodium ion transport	1.95E-02
138	GO:0010228: vegetative to reproductive phase transition of meristem	2.35E-02
139	GO:0009567: double fertilization forming a zygote and endosperm	2.46E-02
140	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.51E-02
141	GO:0010286: heat acclimation	2.57E-02
142	GO:0009737: response to abscisic acid	2.64E-02
143	GO:0016126: sterol biosynthetic process	2.79E-02
144	GO:0009911: positive regulation of flower development	2.79E-02
145	GO:0009908: flower development	2.80E-02
146	GO:0009735: response to cytokinin	2.84E-02
147	GO:0048573: photoperiodism, flowering	3.14E-02
148	GO:0006950: response to stress	3.14E-02
149	GO:0016311: dephosphorylation	3.25E-02
150	GO:0009817: defense response to fungus, incompatible interaction	3.37E-02
151	GO:0009658: chloroplast organization	3.47E-02
152	GO:0051301: cell division	3.53E-02
153	GO:0006811: ion transport	3.62E-02
154	GO:0007568: aging	3.74E-02
155	GO:0009910: negative regulation of flower development	3.74E-02
156	GO:0010119: regulation of stomatal movement	3.74E-02
157	GO:0009631: cold acclimation	3.74E-02
158	GO:0006865: amino acid transport	3.86E-02
159	GO:0007049: cell cycle	3.87E-02
160	GO:0034599: cellular response to oxidative stress	4.12E-02
161	GO:0005975: carbohydrate metabolic process	4.43E-02
162	GO:0051707: response to other organism	4.78E-02
163	GO:0008283: cell proliferation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
10	GO:0015276: ligand-gated ion channel activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0009899: ent-kaurene synthase activity	0.00E+00
13	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
14	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
15	GO:0031409: pigment binding	1.22E-14
16	GO:0016168: chlorophyll binding	1.01E-11
17	GO:0046872: metal ion binding	1.78E-05
18	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.18E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	2.18E-04
20	GO:0080079: cellobiose glucosidase activity	2.18E-04
21	GO:1990189: peptide-serine-N-acetyltransferase activity	2.18E-04
22	GO:0008066: glutamate receptor activity	2.18E-04
23	GO:0000828: inositol hexakisphosphate kinase activity	2.18E-04
24	GO:0052631: sphingolipid delta-8 desaturase activity	2.18E-04
25	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.18E-04
26	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	2.18E-04
27	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.18E-04
28	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.18E-04
29	GO:0016630: protochlorophyllide reductase activity	4.86E-04
30	GO:0008728: GTP diphosphokinase activity	4.86E-04
31	GO:0015180: L-alanine transmembrane transporter activity	4.86E-04
32	GO:0050017: L-3-cyanoalanine synthase activity	4.86E-04
33	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.86E-04
34	GO:0015297: antiporter activity	6.76E-04
35	GO:0005217: intracellular ligand-gated ion channel activity	7.45E-04
36	GO:0004970: ionotropic glutamate receptor activity	7.45E-04
37	GO:0046592: polyamine oxidase activity	7.90E-04
38	GO:0004180: carboxypeptidase activity	7.90E-04
39	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.90E-04
40	GO:0016805: dipeptidase activity	7.90E-04
41	GO:0015189: L-lysine transmembrane transporter activity	1.13E-03
42	GO:0000254: C-4 methylsterol oxidase activity	1.13E-03
43	GO:0015181: arginine transmembrane transporter activity	1.13E-03
44	GO:0015203: polyamine transmembrane transporter activity	1.13E-03
45	GO:0004845: uracil phosphoribosyltransferase activity	1.50E-03
46	GO:0005313: L-glutamate transmembrane transporter activity	1.50E-03
47	GO:0004930: G-protein coupled receptor activity	1.50E-03
48	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.91E-03
49	GO:0051538: 3 iron, 4 sulfur cluster binding	1.91E-03
50	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.35E-03
51	GO:0015562: efflux transmembrane transporter activity	2.35E-03
52	GO:0004462: lactoylglutathione lyase activity	2.35E-03
53	GO:0000156: phosphorelay response regulator activity	2.50E-03
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.82E-03
55	GO:0004124: cysteine synthase activity	2.83E-03
56	GO:0004849: uridine kinase activity	2.83E-03
57	GO:0004602: glutathione peroxidase activity	2.83E-03
58	GO:0102483: scopolin beta-glucosidase activity	3.72E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	3.86E-03
60	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.42E-03
61	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	4.42E-03
62	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.00E-03
63	GO:0071949: FAD binding	5.00E-03
64	GO:0000989: transcription factor activity, transcription factor binding	5.00E-03
65	GO:0003993: acid phosphatase activity	5.46E-03
66	GO:0015174: basic amino acid transmembrane transporter activity	5.62E-03
67	GO:0008422: beta-glucosidase activity	5.70E-03
68	GO:0005515: protein binding	5.83E-03
69	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.25E-03
70	GO:0008047: enzyme activator activity	6.25E-03
71	GO:0047372: acylglycerol lipase activity	6.91E-03
72	GO:0003677: DNA binding	6.98E-03
73	GO:0005506: iron ion binding	7.02E-03
74	GO:0051537: 2 iron, 2 sulfur cluster binding	7.28E-03
75	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.45E-03
76	GO:0015293: symporter activity	7.56E-03
77	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.60E-03
78	GO:0005262: calcium channel activity	8.30E-03
79	GO:0004565: beta-galactosidase activity	8.30E-03
80	GO:0004022: alcohol dehydrogenase (NAD) activity	8.30E-03
81	GO:0005315: inorganic phosphate transmembrane transporter activity	8.30E-03
82	GO:0008131: primary amine oxidase activity	9.03E-03
83	GO:0016787: hydrolase activity	9.19E-03
84	GO:0004190: aspartic-type endopeptidase activity	9.79E-03
85	GO:0003712: transcription cofactor activity	9.79E-03
86	GO:0015171: amino acid transmembrane transporter activity	1.01E-02
87	GO:0031625: ubiquitin protein ligase binding	1.01E-02
88	GO:0008134: transcription factor binding	1.14E-02
89	GO:0005216: ion channel activity	1.22E-02
90	GO:0008324: cation transmembrane transporter activity	1.22E-02
91	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.30E-02
92	GO:0015035: protein disulfide oxidoreductase activity	1.33E-02
93	GO:0008514: organic anion transmembrane transporter activity	1.57E-02
94	GO:0047134: protein-disulfide reductase activity	1.66E-02
95	GO:0016829: lyase activity	1.76E-02
96	GO:0008536: Ran GTPase binding	1.85E-02
97	GO:0008080: N-acetyltransferase activity	1.85E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-02
99	GO:0008289: lipid binding	2.34E-02
100	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.36E-02
101	GO:0008168: methyltransferase activity	3.34E-02
102	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.62E-02
103	GO:0004497: monooxygenase activity	4.30E-02
104	GO:0061630: ubiquitin protein ligase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	8.65E-15
3	GO:0010287: plastoglobule	2.20E-13
4	GO:0009535: chloroplast thylakoid membrane	5.30E-13
5	GO:0009534: chloroplast thylakoid	1.10E-11
6	GO:0009941: chloroplast envelope	3.11E-11
7	GO:0030076: light-harvesting complex	1.26E-10
8	GO:0009579: thylakoid	1.59E-10
9	GO:0009507: chloroplast	3.96E-06
10	GO:0009523: photosystem II	9.38E-06
11	GO:0016021: integral component of membrane	1.61E-05
12	GO:0009517: PSII associated light-harvesting complex II	3.41E-05
13	GO:0042651: thylakoid membrane	6.42E-05
14	GO:0009538: photosystem I reaction center	1.88E-04
15	GO:0031415: NatA complex	4.86E-04
16	GO:0016020: membrane	8.61E-04
17	GO:0009898: cytoplasmic side of plasma membrane	1.50E-03
18	GO:0030660: Golgi-associated vesicle membrane	1.50E-03
19	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.50E-03
20	GO:0005798: Golgi-associated vesicle	2.35E-03
21	GO:0009533: chloroplast stromal thylakoid	3.33E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.86E-03
23	GO:0000151: ubiquitin ligase complex	4.12E-03
24	GO:0005680: anaphase-promoting complex	5.00E-03
25	GO:0010494: cytoplasmic stress granule	5.00E-03
26	GO:0016604: nuclear body	5.62E-03
27	GO:0005765: lysosomal membrane	6.91E-03
28	GO:0005769: early endosome	1.06E-02
29	GO:0009706: chloroplast inner membrane	1.30E-02
30	GO:0009570: chloroplast stroma	1.35E-02
31	GO:0015629: actin cytoskeleton	1.48E-02
32	GO:0005789: endoplasmic reticulum membrane	1.50E-02
33	GO:0005623: cell	1.67E-02
34	GO:0005774: vacuolar membrane	2.30E-02
35	GO:0000932: P-body	2.79E-02
36	GO:0009707: chloroplast outer membrane	3.37E-02
37	GO:0031969: chloroplast membrane	4.30E-02
38	GO:0031977: thylakoid lumen	4.51E-02