Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0060560: developmental growth involved in morphogenesis0.00E+00
2GO:0010111: glyoxysome organization0.00E+00
3GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
4GO:0006635: fatty acid beta-oxidation1.96E-05
5GO:0035494: SNARE complex disassembly6.91E-05
6GO:1903648: positive regulation of chlorophyll catabolic process6.91E-05
7GO:0034063: stress granule assembly6.91E-05
8GO:0010603: regulation of cytoplasmic mRNA processing body assembly6.91E-05
9GO:0019441: tryptophan catabolic process to kynurenine1.66E-04
10GO:0019395: fatty acid oxidation1.66E-04
11GO:0030003: cellular cation homeostasis1.66E-04
12GO:0009695: jasmonic acid biosynthetic process2.16E-04
13GO:0045910: negative regulation of DNA recombination2.81E-04
14GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process2.81E-04
15GO:0009663: plasmodesma organization2.81E-04
16GO:0051259: protein oligomerization4.06E-04
17GO:0032456: endocytic recycling4.06E-04
18GO:0010222: stem vascular tissue pattern formation5.42E-04
19GO:0009738: abscisic acid-activated signaling pathway7.24E-04
20GO:0019509: L-methionine salvage from methylthioadenosine9.99E-04
21GO:1900057: positive regulation of leaf senescence1.17E-03
22GO:0006333: chromatin assembly or disassembly1.17E-03
23GO:0006897: endocytosis1.32E-03
24GO:0030091: protein repair1.34E-03
25GO:0010078: maintenance of root meristem identity1.34E-03
26GO:0007140: male meiotic nuclear division1.34E-03
27GO:0009061: anaerobic respiration1.34E-03
28GO:0006491: N-glycan processing1.34E-03
29GO:0030968: endoplasmic reticulum unfolded protein response1.53E-03
30GO:0071482: cellular response to light stimulus1.53E-03
31GO:0008202: steroid metabolic process1.93E-03
32GO:0007064: mitotic sister chromatid cohesion2.14E-03
33GO:0010215: cellulose microfibril organization2.14E-03
34GO:0006816: calcium ion transport2.36E-03
35GO:0048768: root hair cell tip growth3.06E-03
36GO:0071732: cellular response to nitric oxide3.30E-03
37GO:0034976: response to endoplasmic reticulum stress3.56E-03
38GO:2000377: regulation of reactive oxygen species metabolic process3.81E-03
39GO:0016575: histone deacetylation4.08E-03
40GO:0006874: cellular calcium ion homeostasis4.08E-03
41GO:0031408: oxylipin biosynthetic process4.35E-03
42GO:0051260: protein homooligomerization4.35E-03
43GO:0071369: cellular response to ethylene stimulus4.91E-03
44GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.91E-03
45GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.50E-03
46GO:0010051: xylem and phloem pattern formation5.80E-03
47GO:0000226: microtubule cytoskeleton organization5.80E-03
48GO:0006457: protein folding5.94E-03
49GO:0048544: recognition of pollen6.42E-03
50GO:0061025: membrane fusion6.42E-03
51GO:0006814: sodium ion transport6.42E-03
52GO:0007059: chromosome segregation6.42E-03
53GO:0009749: response to glucose6.74E-03
54GO:0016032: viral process7.40E-03
55GO:0007264: small GTPase mediated signal transduction7.40E-03
56GO:0071281: cellular response to iron ion7.73E-03
57GO:0019760: glucosinolate metabolic process8.08E-03
58GO:0010286: heat acclimation8.42E-03
59GO:0016579: protein deubiquitination8.77E-03
60GO:0009911: positive regulation of flower development9.13E-03
61GO:0046777: protein autophosphorylation9.46E-03
62GO:0009816: defense response to bacterium, incompatible interaction9.50E-03
63GO:0048573: photoperiodism, flowering1.02E-02
64GO:0006950: response to stress1.02E-02
65GO:0045454: cell redox homeostasis1.06E-02
66GO:0006886: intracellular protein transport1.09E-02
67GO:0030244: cellulose biosynthetic process1.10E-02
68GO:0006499: N-terminal protein myristoylation1.18E-02
69GO:0006811: ion transport1.18E-02
70GO:0009631: cold acclimation1.22E-02
71GO:0034599: cellular response to oxidative stress1.34E-02
72GO:0006099: tricarboxylic acid cycle1.34E-02
73GO:0006397: mRNA processing1.37E-02
74GO:0042538: hyperosmotic salinity response1.83E-02
75GO:0006813: potassium ion transport1.92E-02
76GO:0009909: regulation of flower development2.07E-02
77GO:0009416: response to light stimulus2.33E-02
78GO:0009611: response to wounding2.38E-02
79GO:0009737: response to abscisic acid2.72E-02
80GO:0009845: seed germination3.07E-02
81GO:0006511: ubiquitin-dependent protein catabolic process3.16E-02
82GO:0016310: phosphorylation3.25E-02
83GO:0006633: fatty acid biosynthetic process3.41E-02
84GO:0040008: regulation of growth3.53E-02
85GO:0010150: leaf senescence3.65E-02
86GO:0010228: vegetative to reproductive phase transition of meristem3.77E-02
87GO:0008380: RNA splicing4.14E-02
88GO:0010468: regulation of gene expression4.14E-02
89GO:0009826: unidimensional cell growth4.84E-02
RankGO TermAdjusted P value
1GO:0070191: methionine-R-sulfoxide reductase activity0.00E+00
2GO:0005272: sodium channel activity0.00E+00
3GO:0046522: S-methyl-5-thioribose kinase activity0.00E+00
4GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
5GO:0019707: protein-cysteine S-acyltransferase activity6.91E-05
6GO:0035671: enone reductase activity6.91E-05
7GO:0008692: 3-hydroxybutyryl-CoA epimerase activity6.91E-05
8GO:0030544: Hsp70 protein binding6.91E-05
9GO:0004061: arylformamidase activity1.66E-04
10GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity1.66E-04
11GO:0003988: acetyl-CoA C-acyltransferase activity1.66E-04
12GO:0005483: soluble NSF attachment protein activity2.81E-04
13GO:0004180: carboxypeptidase activity2.81E-04
14GO:0004108: citrate (Si)-synthase activity4.06E-04
15GO:0030527: structural constituent of chromatin4.06E-04
16GO:0004165: dodecenoyl-CoA delta-isomerase activity4.06E-04
17GO:0004300: enoyl-CoA hydratase activity4.06E-04
18GO:0016004: phospholipase activator activity5.42E-04
19GO:0019905: syntaxin binding5.42E-04
20GO:0003730: mRNA 3'-UTR binding9.99E-04
21GO:0008113: peptide-methionine (S)-S-oxide reductase activity9.99E-04
22GO:0033743: peptide-methionine (R)-S-oxide reductase activity9.99E-04
23GO:0005261: cation channel activity9.99E-04
24GO:0003682: chromatin binding1.05E-03
25GO:0005267: potassium channel activity1.53E-03
26GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.53E-03
27GO:0000976: transcription regulatory region sequence-specific DNA binding2.58E-03
28GO:0004521: endoribonuclease activity2.58E-03
29GO:0005262: calcium channel activity2.82E-03
30GO:0004970: ionotropic glutamate receptor activity3.30E-03
31GO:0005217: intracellular ligand-gated ion channel activity3.30E-03
32GO:0004407: histone deacetylase activity3.81E-03
33GO:0003729: mRNA binding4.00E-03
34GO:0043424: protein histidine kinase binding4.08E-03
35GO:0019706: protein-cysteine S-palmitoyltransferase activity4.35E-03
36GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.35E-03
37GO:0003756: protein disulfide isomerase activity5.20E-03
38GO:0042802: identical protein binding5.86E-03
39GO:0004197: cysteine-type endopeptidase activity7.40E-03
40GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.73E-03
41GO:0005200: structural constituent of cytoskeleton8.42E-03
42GO:0005509: calcium ion binding9.46E-03
43GO:0008236: serine-type peptidase activity1.06E-02
44GO:0003746: translation elongation factor activity1.30E-02
45GO:0016301: kinase activity2.20E-02
46GO:0004252: serine-type endopeptidase activity3.12E-02
47GO:0015144: carbohydrate transmembrane transporter activity3.30E-02
48GO:0005507: copper ion binding3.31E-02
49GO:0005351: sugar:proton symporter activity3.59E-02
50GO:0005525: GTP binding3.82E-02
51GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.32E-02
RankGO TermAdjusted P value
1GO:0042406: extrinsic component of endoplasmic reticulum membrane2.81E-04
2GO:0030131: clathrin adaptor complex1.34E-03
3GO:0009514: glyoxysome1.53E-03
4GO:0010494: cytoplasmic stress granule1.73E-03
5GO:0005768: endosome1.87E-03
6GO:0030125: clathrin vesicle coat2.14E-03
7GO:0005774: vacuolar membrane3.89E-03
8GO:0005905: clathrin-coated pit4.35E-03
9GO:0009506: plasmodesma4.77E-03
10GO:0005777: peroxisome5.10E-03
11GO:0016021: integral component of membrane7.18E-03
12GO:0000785: chromatin7.40E-03
13GO:0005802: trans-Golgi network7.79E-03
14GO:0005773: vacuole8.19E-03
15GO:0005794: Golgi apparatus9.15E-03
16GO:0000151: ubiquitin ligase complex1.10E-02
17GO:0019005: SCF ubiquitin ligase complex1.10E-02
18GO:0005886: plasma membrane1.23E-02
19GO:0005783: endoplasmic reticulum1.32E-02
20GO:0005819: spindle1.38E-02
21GO:0043231: intracellular membrane-bounded organelle1.44E-02
22GO:0031201: SNARE complex1.47E-02
23GO:0005856: cytoskeleton1.69E-02
24GO:0010008: endosome membrane2.22E-02
25GO:0009543: chloroplast thylakoid lumen2.90E-02
26GO:0009524: phragmoplast3.01E-02
Gene type



Gene DE type