co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0071311: cellular response to acetate	0.00E+00
5	GO:0071260: cellular response to mechanical stimulus	0.00E+00
6	GO:0042906: xanthine transport	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	1.03E-21
8	GO:0018298: protein-chromophore linkage	9.85E-14
9	GO:0015979: photosynthesis	2.36E-11
10	GO:0009645: response to low light intensity stimulus	7.62E-09
11	GO:0009416: response to light stimulus	3.06E-08
12	GO:0009644: response to high light intensity	1.19E-07
13	GO:0010218: response to far red light	9.73E-07
14	GO:0009769: photosynthesis, light harvesting in photosystem II	1.31E-06
15	GO:0010114: response to red light	2.78E-06
16	GO:0009637: response to blue light	3.39E-05
17	GO:0010196: nonphotochemical quenching	1.03E-04
18	GO:0009409: response to cold	1.26E-04
19	GO:0015812: gamma-aminobutyric acid transport	1.73E-04
20	GO:0006475: internal protein amino acid acetylation	1.73E-04
21	GO:0006474: N-terminal protein amino acid acetylation	1.73E-04
22	GO:0017198: N-terminal peptidyl-serine acetylation	1.73E-04
23	GO:0080173: male-female gamete recognition during double fertilization	1.73E-04
24	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.73E-04
25	GO:0006816: calcium ion transport	3.31E-04
26	GO:0030259: lipid glycosylation	3.92E-04
27	GO:0015720: allantoin transport	3.92E-04
28	GO:0006883: cellular sodium ion homeostasis	3.92E-04
29	GO:0051170: nuclear import	3.92E-04
30	GO:0030003: cellular cation homeostasis	3.92E-04
31	GO:0015857: uracil transport	3.92E-04
32	GO:1902884: positive regulation of response to oxidative stress	3.92E-04
33	GO:0071230: cellular response to amino acid stimulus	6.40E-04
34	GO:1901562: response to paraquat	6.40E-04
35	GO:1902448: positive regulation of shade avoidance	6.40E-04
36	GO:0071705: nitrogen compound transport	6.40E-04
37	GO:0006874: cellular calcium ion homeostasis	7.39E-04
38	GO:0048511: rhythmic process	8.10E-04
39	GO:0010017: red or far-red light signaling pathway	8.83E-04
40	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	9.13E-04
41	GO:0044211: CTP salvage	9.13E-04
42	GO:0080167: response to karrikin	1.18E-03
43	GO:0009765: photosynthesis, light harvesting	1.21E-03
44	GO:2000306: positive regulation of photomorphogenesis	1.21E-03
45	GO:0010600: regulation of auxin biosynthetic process	1.21E-03
46	GO:0044206: UMP salvage	1.21E-03
47	GO:1901002: positive regulation of response to salt stress	1.21E-03
48	GO:0030104: water homeostasis	1.21E-03
49	GO:0006814: sodium ion transport	1.40E-03
50	GO:0043097: pyrimidine nucleoside salvage	1.54E-03
51	GO:0002238: response to molecule of fungal origin	1.89E-03
52	GO:0009635: response to herbicide	1.89E-03
53	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.89E-03
54	GO:0045962: positive regulation of development, heterochronic	1.89E-03
55	GO:0006206: pyrimidine nucleobase metabolic process	1.89E-03
56	GO:0000060: protein import into nucleus, translocation	1.89E-03
57	GO:0010077: maintenance of inflorescence meristem identity	2.27E-03
58	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.27E-03
59	GO:0010161: red light signaling pathway	2.67E-03
60	GO:0015995: chlorophyll biosynthetic process	2.70E-03
61	GO:0007623: circadian rhythm	2.71E-03
62	GO:0009704: de-etiolation	3.09E-03
63	GO:0010928: regulation of auxin mediated signaling pathway	3.09E-03
64	GO:0000160: phosphorelay signal transduction system	3.14E-03
65	GO:0010099: regulation of photomorphogenesis	3.54E-03
66	GO:0009827: plant-type cell wall modification	3.54E-03
67	GO:0090333: regulation of stomatal closure	4.00E-03
68	GO:0009735: response to cytokinin	4.44E-03
69	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.49E-03
70	GO:0009640: photomorphogenesis	4.86E-03
71	GO:0006535: cysteine biosynthetic process from serine	4.99E-03
72	GO:0009641: shade avoidance	4.99E-03
73	GO:0009970: cellular response to sulfate starvation	4.99E-03
74	GO:0006995: cellular response to nitrogen starvation	4.99E-03
75	GO:0008643: carbohydrate transport	5.26E-03
76	GO:0018119: peptidyl-cysteine S-nitrosylation	5.52E-03
77	GO:0050826: response to freezing	6.61E-03
78	GO:0009718: anthocyanin-containing compound biosynthetic process	6.61E-03
79	GO:0009767: photosynthetic electron transport chain	6.61E-03
80	GO:0044550: secondary metabolite biosynthetic process	6.90E-03
81	GO:0010207: photosystem II assembly	7.20E-03
82	GO:0009266: response to temperature stimulus	7.20E-03
83	GO:0019853: L-ascorbic acid biosynthetic process	7.79E-03
84	GO:0090351: seedling development	7.79E-03
85	GO:0045892: negative regulation of transcription, DNA-templated	7.96E-03
86	GO:0034976: response to endoplasmic reticulum stress	8.41E-03
87	GO:0019344: cysteine biosynthetic process	9.03E-03
88	GO:0016575: histone deacetylation	9.69E-03
89	GO:0003333: amino acid transmembrane transport	1.03E-02
90	GO:0010431: seed maturation	1.03E-02
91	GO:0009269: response to desiccation	1.03E-02
92	GO:0006012: galactose metabolic process	1.17E-02
93	GO:0071215: cellular response to abscisic acid stimulus	1.17E-02
94	GO:0009058: biosynthetic process	1.23E-02
95	GO:0045492: xylan biosynthetic process	1.24E-02
96	GO:0019722: calcium-mediated signaling	1.24E-02
97	GO:0016117: carotenoid biosynthetic process	1.32E-02
98	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.32E-02
99	GO:0070417: cellular response to cold	1.32E-02
100	GO:0034220: ion transmembrane transport	1.39E-02
101	GO:0009737: response to abscisic acid	1.51E-02
102	GO:0009739: response to gibberellin	1.81E-02
103	GO:0006351: transcription, DNA-templated	1.83E-02
104	GO:1901657: glycosyl compound metabolic process	1.87E-02
105	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
106	GO:0019760: glucosinolate metabolic process	1.95E-02
107	GO:0009738: abscisic acid-activated signaling pathway	2.02E-02
108	GO:0010286: heat acclimation	2.04E-02
109	GO:0009911: positive regulation of flower development	2.21E-02
110	GO:0010029: regulation of seed germination	2.30E-02
111	GO:0048573: photoperiodism, flowering	2.48E-02
112	GO:0048481: plant ovule development	2.67E-02
113	GO:0046686: response to cadmium ion	2.86E-02
114	GO:0006811: ion transport	2.87E-02
115	GO:0006457: protein folding	2.91E-02
116	GO:0007568: aging	2.96E-02
117	GO:0009631: cold acclimation	2.96E-02
118	GO:0010119: regulation of stomatal movement	2.96E-02
119	GO:0009651: response to salt stress	3.25E-02
120	GO:0006355: regulation of transcription, DNA-templated	3.56E-02
121	GO:0042542: response to hydrogen peroxide	3.68E-02
122	GO:0051707: response to other organism	3.79E-02
123	GO:0009965: leaf morphogenesis	4.12E-02
124	GO:0000165: MAPK cascade	4.34E-02
125	GO:0007165: signal transduction	4.36E-02
126	GO:0042538: hyperosmotic salinity response	4.45E-02
127	GO:0006629: lipid metabolic process	4.57E-02
128	GO:0009408: response to heat	4.57E-02
129	GO:0009585: red, far-red light phototransduction	4.68E-02
130	GO:0006813: potassium ion transport	4.68E-02
131	GO:0055114: oxidation-reduction process	4.88E-02
132	GO:0009414: response to water deprivation	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0015276: ligand-gated ion channel activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0005272: sodium channel activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0004567: beta-mannosidase activity	0.00E+00
12	GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	0.00E+00
13	GO:0031409: pigment binding	6.53E-20
14	GO:0016168: chlorophyll binding	3.92E-16
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.73E-04
16	GO:0080079: cellobiose glucosidase activity	1.73E-04
17	GO:1990189: peptide-serine-N-acetyltransferase activity	1.73E-04
18	GO:0008066: glutamate receptor activity	1.73E-04
19	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.73E-04
20	GO:0015180: L-alanine transmembrane transporter activity	3.92E-04
21	GO:0050017: L-3-cyanoalanine synthase activity	3.92E-04
22	GO:0005274: allantoin uptake transmembrane transporter activity	3.92E-04
23	GO:0005262: calcium channel activity	4.32E-04
24	GO:0004970: ionotropic glutamate receptor activity	5.46E-04
25	GO:0005217: intracellular ligand-gated ion channel activity	5.46E-04
26	GO:0004096: catalase activity	6.40E-04
27	GO:0015189: L-lysine transmembrane transporter activity	9.13E-04
28	GO:0015181: arginine transmembrane transporter activity	9.13E-04
29	GO:0004845: uracil phosphoribosyltransferase activity	1.21E-03
30	GO:0015210: uracil transmembrane transporter activity	1.21E-03
31	GO:0005313: L-glutamate transmembrane transporter activity	1.21E-03
32	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.54E-03
33	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.54E-03
34	GO:0000156: phosphorelay response regulator activity	1.82E-03
35	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.87E-03
36	GO:0004849: uridine kinase activity	2.27E-03
37	GO:0004124: cysteine synthase activity	2.27E-03
38	GO:0005261: cation channel activity	2.27E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	3.09E-03
40	GO:0005267: potassium channel activity	3.54E-03
41	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.54E-03
42	GO:0000989: transcription factor activity, transcription factor binding	4.00E-03
43	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.00E-03
44	GO:0046872: metal ion binding	4.59E-03
45	GO:0004177: aminopeptidase activity	5.52E-03
46	GO:0047372: acylglycerol lipase activity	5.52E-03
47	GO:0004497: monooxygenase activity	6.20E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	6.61E-03
49	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
50	GO:0004565: beta-galactosidase activity	6.61E-03
51	GO:0031625: ubiquitin protein ligase binding	7.25E-03
52	GO:0003712: transcription cofactor activity	7.79E-03
53	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.60E-03
54	GO:0019825: oxygen binding	8.70E-03
55	GO:0020037: heme binding	9.00E-03
56	GO:0008134: transcription factor binding	9.03E-03
57	GO:0004407: histone deacetylase activity	9.03E-03
58	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.03E-02
59	GO:0008514: organic anion transmembrane transporter activity	1.24E-02
60	GO:0003756: protein disulfide isomerase activity	1.24E-02
61	GO:0005506: iron ion binding	1.45E-02
62	GO:0008080: N-acetyltransferase activity	1.47E-02
63	GO:0015297: antiporter activity	1.54E-02
64	GO:0005515: protein binding	1.58E-02
65	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
66	GO:0016740: transferase activity	2.70E-02
67	GO:0050897: cobalt ion binding	2.96E-02
68	GO:0003993: acid phosphatase activity	3.27E-02
69	GO:0008422: beta-glucosidase activity	3.37E-02
70	GO:0015293: symporter activity	4.12E-02
71	GO:0005198: structural molecule activity	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.50E-17
3	GO:0010287: plastoglobule	7.68E-16
4	GO:0030076: light-harvesting complex	1.77E-15
5	GO:0009579: thylakoid	1.12E-12
6	GO:0009534: chloroplast thylakoid	2.17E-11
7	GO:0009535: chloroplast thylakoid membrane	6.27E-10
8	GO:0009941: chloroplast envelope	1.06E-08
9	GO:0009523: photosystem II	1.05E-07
10	GO:0016021: integral component of membrane	1.15E-07
11	GO:0009507: chloroplast	2.01E-05
12	GO:0009517: PSII associated light-harvesting complex II	2.30E-05
13	GO:0042651: thylakoid membrane	3.89E-05
14	GO:0016020: membrane	6.38E-05
15	GO:0031415: NatA complex	3.92E-04
16	GO:0009898: cytoplasmic side of plasma membrane	1.21E-03
17	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.67E-03
18	GO:0009533: chloroplast stromal thylakoid	2.67E-03
19	GO:0000151: ubiquitin ligase complex	2.99E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	3.09E-03
21	GO:0009538: photosystem I reaction center	3.09E-03
22	GO:0030095: chloroplast photosystem II	7.20E-03
23	GO:0009654: photosystem II oxygen evolving complex	9.69E-03
24	GO:0019898: extrinsic component of membrane	1.62E-02
25	GO:0022626: cytosolic ribosome	1.99E-02
26	GO:0009505: plant-type cell wall	2.07E-02
27	GO:0000786: nucleosome	3.06E-02
28	GO:0005774: vacuolar membrane	3.43E-02
29	GO:0031977: thylakoid lumen	3.58E-02
30	GO:0009570: chloroplast stroma	4.07E-02
31	GO:0005618: cell wall	4.27E-02
32	GO:0005622: intracellular	4.30E-02
33	GO:0031966: mitochondrial membrane	4.45E-02