co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G45600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:0046677: response to antibiotic	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	1.55E-07
7	GO:0015979: photosynthesis	3.92E-06
8	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.21E-05
9	GO:0009645: response to low light intensity stimulus	4.27E-05
10	GO:0010206: photosystem II repair	8.74E-05
11	GO:0017198: N-terminal peptidyl-serine acetylation	9.88E-05
12	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	9.88E-05
13	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	9.88E-05
14	GO:0006475: internal protein amino acid acetylation	9.88E-05
15	GO:0006474: N-terminal protein amino acid acetylation	9.88E-05
16	GO:0018298: protein-chromophore linkage	1.11E-04
17	GO:0009637: response to blue light	1.56E-04
18	GO:0010114: response to red light	2.22E-04
19	GO:0015720: allantoin transport	2.32E-04
20	GO:0006883: cellular sodium ion homeostasis	2.32E-04
21	GO:0009915: phloem sucrose loading	2.32E-04
22	GO:0042548: regulation of photosynthesis, light reaction	2.32E-04
23	GO:0015857: uracil transport	2.32E-04
24	GO:1902884: positive regulation of response to oxidative stress	2.32E-04
25	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.32E-04
26	GO:0009644: response to high light intensity	2.47E-04
27	GO:1902448: positive regulation of shade avoidance	3.86E-04
28	GO:0071705: nitrogen compound transport	3.86E-04
29	GO:1901562: response to paraquat	3.86E-04
30	GO:0009409: response to cold	4.10E-04
31	GO:0031936: negative regulation of chromatin silencing	5.54E-04
32	GO:0071786: endoplasmic reticulum tubular network organization	5.54E-04
33	GO:0006646: phosphatidylethanolamine biosynthetic process	7.37E-04
34	GO:0009765: photosynthesis, light harvesting	7.37E-04
35	GO:2000306: positive regulation of photomorphogenesis	7.37E-04
36	GO:1901002: positive regulation of response to salt stress	7.37E-04
37	GO:1901657: glycosyl compound metabolic process	8.66E-04
38	GO:0016123: xanthophyll biosynthetic process	9.32E-04
39	GO:0045962: positive regulation of development, heterochronic	1.14E-03
40	GO:0000060: protein import into nucleus, translocation	1.14E-03
41	GO:1900425: negative regulation of defense response to bacterium	1.14E-03
42	GO:0009643: photosynthetic acclimation	1.14E-03
43	GO:0010077: maintenance of inflorescence meristem identity	1.36E-03
44	GO:0009735: response to cytokinin	1.36E-03
45	GO:0010218: response to far red light	1.54E-03
46	GO:0009416: response to light stimulus	1.56E-03
47	GO:0007050: cell cycle arrest	1.59E-03
48	GO:0010196: nonphotochemical quenching	1.59E-03
49	GO:0080111: DNA demethylation	1.59E-03
50	GO:0009631: cold acclimation	1.61E-03
51	GO:0016051: carbohydrate biosynthetic process	1.77E-03
52	GO:0050821: protein stabilization	1.84E-03
53	GO:0051707: response to other organism	2.27E-03
54	GO:0030042: actin filament depolymerization	2.65E-03
55	GO:0010018: far-red light signaling pathway	2.65E-03
56	GO:0009688: abscisic acid biosynthetic process	2.95E-03
57	GO:0015770: sucrose transport	3.25E-03
58	GO:0019684: photosynthesis, light reaction	3.25E-03
59	GO:0018119: peptidyl-cysteine S-nitrosylation	3.25E-03
60	GO:0050826: response to freezing	3.89E-03
61	GO:0009767: photosynthetic electron transport chain	3.89E-03
62	GO:0010207: photosystem II assembly	4.22E-03
63	GO:0007015: actin filament organization	4.22E-03
64	GO:0005985: sucrose metabolic process	4.57E-03
65	GO:0090351: seedling development	4.57E-03
66	GO:0006863: purine nucleobase transport	4.92E-03
67	GO:0042753: positive regulation of circadian rhythm	4.92E-03
68	GO:0048511: rhythmic process	6.03E-03
69	GO:0010431: seed maturation	6.03E-03
70	GO:0035428: hexose transmembrane transport	6.42E-03
71	GO:0007623: circadian rhythm	7.43E-03
72	GO:0016117: carotenoid biosynthetic process	7.64E-03
73	GO:0042631: cellular response to water deprivation	8.07E-03
74	GO:0010182: sugar mediated signaling pathway	8.50E-03
75	GO:0046323: glucose import	8.50E-03
76	GO:0006814: sodium ion transport	8.94E-03
77	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.07E-02
78	GO:0030163: protein catabolic process	1.08E-02
79	GO:0009639: response to red or far red light	1.13E-02
80	GO:0010286: heat acclimation	1.18E-02
81	GO:0006970: response to osmotic stress	1.24E-02
82	GO:0016126: sterol biosynthetic process	1.28E-02
83	GO:0009911: positive regulation of flower development	1.28E-02
84	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.33E-02
85	GO:0006974: cellular response to DNA damage stimulus	1.38E-02
86	GO:0080167: response to karrikin	1.43E-02
87	GO:0015995: chlorophyll biosynthetic process	1.43E-02
88	GO:0048573: photoperiodism, flowering	1.43E-02
89	GO:0016311: dephosphorylation	1.49E-02
90	GO:0044550: secondary metabolite biosynthetic process	1.55E-02
91	GO:0009414: response to water deprivation	1.87E-02
92	GO:0006629: lipid metabolic process	2.11E-02
93	GO:0009408: response to heat	2.11E-02
94	GO:0009640: photomorphogenesis	2.18E-02
95	GO:0009965: leaf morphogenesis	2.37E-02
96	GO:0000165: MAPK cascade	2.50E-02
97	GO:0042538: hyperosmotic salinity response	2.57E-02
98	GO:0009585: red, far-red light phototransduction	2.70E-02
99	GO:0009651: response to salt stress	2.81E-02
100	GO:0009909: regulation of flower development	2.90E-02
101	GO:0009624: response to nematode	3.47E-02
102	GO:0035556: intracellular signal transduction	3.95E-02
103	GO:0009058: biosynthetic process	4.22E-02
104	GO:0045893: positive regulation of transcription, DNA-templated	4.29E-02
105	GO:0055085: transmembrane transport	4.74E-02
106	GO:0040008: regulation of growth	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
2	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	0.00E+00
10	GO:0080082: esculin beta-glucosidase activity	0.00E+00
11	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
12	GO:0031409: pigment binding	7.80E-06
13	GO:0016168: chlorophyll binding	8.10E-05
14	GO:0080079: cellobiose glucosidase activity	9.88E-05
15	GO:1990189: peptide-serine-N-acetyltransferase activity	9.88E-05
16	GO:1990190: peptide-glutamate-N-acetyltransferase activity	9.88E-05
17	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	9.88E-05
18	GO:0003993: acid phosphatase activity	1.66E-04
19	GO:0005274: allantoin uptake transmembrane transporter activity	2.32E-04
20	GO:0047216: inositol 3-alpha-galactosyltransferase activity	2.32E-04
21	GO:0000254: C-4 methylsterol oxidase activity	5.54E-04
22	GO:0015210: uracil transmembrane transporter activity	7.37E-04
23	GO:0015144: carbohydrate transmembrane transporter activity	8.63E-04
24	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	9.32E-04
25	GO:0051538: 3 iron, 4 sulfur cluster binding	9.32E-04
26	GO:0005351: sugar:proton symporter activity	9.99E-04
27	GO:0102483: scopolin beta-glucosidase activity	1.27E-03
28	GO:0008506: sucrose:proton symporter activity	1.59E-03
29	GO:0005337: nucleoside transmembrane transporter activity	1.84E-03
30	GO:0008422: beta-glucosidase activity	1.93E-03
31	GO:0071949: FAD binding	2.37E-03
32	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.95E-03
33	GO:0047372: acylglycerol lipase activity	3.25E-03
34	GO:0008515: sucrose transmembrane transporter activity	3.25E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	3.89E-03
36	GO:0005315: inorganic phosphate transmembrane transporter activity	3.89E-03
37	GO:0003712: transcription cofactor activity	4.57E-03
38	GO:0008134: transcription factor binding	5.28E-03
39	GO:0005345: purine nucleobase transmembrane transporter activity	5.65E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	6.82E-03
41	GO:0008514: organic anion transmembrane transporter activity	7.23E-03
42	GO:0004672: protein kinase activity	8.15E-03
43	GO:0008080: N-acetyltransferase activity	8.50E-03
44	GO:0005355: glucose transmembrane transporter activity	8.94E-03
45	GO:0046872: metal ion binding	1.01E-02
46	GO:0005515: protein binding	1.23E-02
47	GO:0008375: acetylglucosaminyltransferase activity	1.38E-02
48	GO:0016787: hydrolase activity	1.44E-02
49	GO:0008236: serine-type peptidase activity	1.49E-02
50	GO:0005506: iron ion binding	1.89E-02
51	GO:0042393: histone binding	2.00E-02
52	GO:0015293: symporter activity	2.37E-02
53	GO:0031625: ubiquitin protein ligase binding	2.90E-02
54	GO:0045735: nutrient reservoir activity	3.04E-02
55	GO:0016874: ligase activity	3.32E-02
56	GO:0003779: actin binding	3.39E-02
57	GO:0016746: transferase activity, transferring acyl groups	3.54E-02
58	GO:0016758: transferase activity, transferring hexosyl groups	3.99E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.15E-02
60	GO:0016829: lyase activity	4.30E-02
61	GO:0004252: serine-type endopeptidase activity	4.38E-02
62	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.46E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	5.15E-10
2	GO:0009579: thylakoid	1.60E-09
3	GO:0010287: plastoglobule	3.10E-09
4	GO:0009534: chloroplast thylakoid	3.07E-08
5	GO:0009522: photosystem I	7.37E-07
6	GO:0009507: chloroplast	1.64E-06
7	GO:0009941: chloroplast envelope	2.94E-06
8	GO:0030076: light-harvesting complex	6.43E-06
9	GO:0009538: photosystem I reaction center	5.57E-05
10	GO:0009543: chloroplast thylakoid lumen	6.79E-05
11	GO:0009783: photosystem II antenna complex	9.88E-05
12	GO:0031977: thylakoid lumen	1.98E-04
13	GO:0031415: NatA complex	2.32E-04
14	GO:0042651: thylakoid membrane	3.49E-04
15	GO:0016020: membrane	4.24E-04
16	GO:0071782: endoplasmic reticulum tubular network	5.54E-04
17	GO:0009898: cytoplasmic side of plasma membrane	7.37E-04
18	GO:0009517: PSII associated light-harvesting complex II	7.37E-04
19	GO:0009533: chloroplast stromal thylakoid	1.59E-03
20	GO:0016021: integral component of membrane	1.80E-03
21	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.84E-03
22	GO:0031969: chloroplast membrane	2.32E-03
23	GO:0031307: integral component of mitochondrial outer membrane	3.57E-03
24	GO:0030095: chloroplast photosystem II	4.22E-03
25	GO:0009654: photosystem II oxygen evolving complex	5.65E-03
26	GO:0015629: actin cytoskeleton	6.82E-03
27	GO:0009570: chloroplast stroma	9.23E-03
28	GO:0009523: photosystem II	9.39E-03
29	GO:0019898: extrinsic component of membrane	9.39E-03
30	GO:0000151: ubiquitin ligase complex	1.54E-02
31	GO:0005789: endoplasmic reticulum membrane	3.27E-02
32	GO:0022626: cytosolic ribosome	3.58E-02