co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G44450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0030644: cellular chloride ion homeostasis	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	2.79E-21
7	GO:0018298: protein-chromophore linkage	1.77E-15
8	GO:0015979: photosynthesis	7.20E-12
9	GO:0009645: response to low light intensity stimulus	1.07E-09
10	GO:0010218: response to far red light	1.68E-09
11	GO:0009644: response to high light intensity	7.96E-09
12	GO:0009637: response to blue light	1.45E-07
13	GO:0009769: photosynthesis, light harvesting in photosystem II	2.84E-07
14	GO:0010114: response to red light	2.92E-07
15	GO:0009409: response to cold	7.27E-07
16	GO:0009416: response to light stimulus	2.72E-06
17	GO:0007623: circadian rhythm	6.88E-06
18	GO:0010196: nonphotochemical quenching	3.89E-05
19	GO:0015812: gamma-aminobutyric acid transport	9.33E-05
20	GO:0042542: response to hydrogen peroxide	1.89E-04
21	GO:0006883: cellular sodium ion homeostasis	2.20E-04
22	GO:0051170: nuclear import	2.20E-04
23	GO:1902884: positive regulation of response to oxidative stress	2.20E-04
24	GO:0080167: response to karrikin	3.21E-04
25	GO:0048511: rhythmic process	3.56E-04
26	GO:1902448: positive regulation of shade avoidance	3.67E-04
27	GO:0006598: polyamine catabolic process	3.67E-04
28	GO:1901562: response to paraquat	3.67E-04
29	GO:0042256: mature ribosome assembly	3.67E-04
30	GO:0010017: red or far-red light signaling pathway	3.90E-04
31	GO:0031936: negative regulation of chromatin silencing	5.28E-04
32	GO:0009765: photosynthesis, light harvesting	7.02E-04
33	GO:2000306: positive regulation of photomorphogenesis	7.02E-04
34	GO:0010600: regulation of auxin biosynthetic process	7.02E-04
35	GO:1901002: positive regulation of response to salt stress	7.02E-04
36	GO:0030104: water homeostasis	7.02E-04
37	GO:0006355: regulation of transcription, DNA-templated	7.39E-04
38	GO:0048578: positive regulation of long-day photoperiodism, flowering	8.88E-04
39	GO:0045962: positive regulation of development, heterochronic	1.08E-03
40	GO:0009635: response to herbicide	1.08E-03
41	GO:0009735: response to cytokinin	1.21E-03
42	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.29E-03
43	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.29E-03
44	GO:0000160: phosphorelay signal transduction system	1.37E-03
45	GO:0080111: DNA demethylation	1.51E-03
46	GO:0010161: red light signaling pathway	1.51E-03
47	GO:0010928: regulation of auxin mediated signaling pathway	1.75E-03
48	GO:0010078: maintenance of root meristem identity	1.75E-03
49	GO:0009704: de-etiolation	1.75E-03
50	GO:0009640: photomorphogenesis	2.10E-03
51	GO:0006351: transcription, DNA-templated	2.19E-03
52	GO:0090333: regulation of stomatal closure	2.25E-03
53	GO:0008643: carbohydrate transport	2.27E-03
54	GO:0030042: actin filament depolymerization	2.52E-03
55	GO:0042538: hyperosmotic salinity response	2.63E-03
56	GO:0045892: negative regulation of transcription, DNA-templated	2.70E-03
57	GO:0009970: cellular response to sulfate starvation	2.80E-03
58	GO:0006995: cellular response to nitrogen starvation	2.80E-03
59	GO:0055062: phosphate ion homeostasis	2.80E-03
60	GO:0009585: red, far-red light phototransduction	2.82E-03
61	GO:0018119: peptidyl-cysteine S-nitrosylation	3.09E-03
62	GO:0050826: response to freezing	3.69E-03
63	GO:0018107: peptidyl-threonine phosphorylation	3.69E-03
64	GO:0009767: photosynthetic electron transport chain	3.69E-03
65	GO:0010207: photosystem II assembly	4.01E-03
66	GO:0007015: actin filament organization	4.01E-03
67	GO:0009266: response to temperature stimulus	4.01E-03
68	GO:0090351: seedling development	4.33E-03
69	GO:0009269: response to desiccation	5.72E-03
70	GO:0003333: amino acid transmembrane transport	5.72E-03
71	GO:0010431: seed maturation	5.72E-03
72	GO:0071215: cellular response to abscisic acid stimulus	6.47E-03
73	GO:0045492: xylan biosynthetic process	6.85E-03
74	GO:0035556: intracellular signal transduction	7.64E-03
75	GO:0046686: response to cadmium ion	7.92E-03
76	GO:0010468: regulation of gene expression	8.21E-03
77	GO:0006814: sodium ion transport	8.47E-03
78	GO:0042752: regulation of circadian rhythm	8.47E-03
79	GO:0000302: response to reactive oxygen species	9.33E-03
80	GO:1901657: glycosyl compound metabolic process	1.02E-02
81	GO:0019760: glucosinolate metabolic process	1.07E-02
82	GO:0010286: heat acclimation	1.11E-02
83	GO:0016579: protein deubiquitination	1.16E-02
84	GO:0007165: signal transduction	1.23E-02
85	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.26E-02
86	GO:0048573: photoperiodism, flowering	1.36E-02
87	GO:0006950: response to stress	1.36E-02
88	GO:0010200: response to chitin	1.37E-02
89	GO:0048481: plant ovule development	1.46E-02
90	GO:0009813: flavonoid biosynthetic process	1.51E-02
91	GO:0010119: regulation of stomatal movement	1.62E-02
92	GO:0006629: lipid metabolic process	1.96E-02
93	GO:0051707: response to other organism	2.07E-02
94	GO:0009965: leaf morphogenesis	2.24E-02
95	GO:0000165: MAPK cascade	2.37E-02
96	GO:0006812: cation transport	2.43E-02
97	GO:0009651: response to salt stress	2.50E-02
98	GO:0009873: ethylene-activated signaling pathway	2.53E-02
99	GO:0009909: regulation of flower development	2.75E-02
100	GO:0009908: flower development	3.14E-02
101	GO:0009624: response to nematode	3.28E-02
102	GO:0018105: peptidyl-serine phosphorylation	3.35E-02
103	GO:0009611: response to wounding	3.55E-02
104	GO:0042744: hydrogen peroxide catabolic process	4.22E-02
105	GO:0055085: transmembrane transport	4.39E-02
106	GO:0009737: response to abscisic acid	4.47E-02
107	GO:0016036: cellular response to phosphate starvation	4.61E-02
108	GO:0010228: vegetative to reproductive phase transition of meristem	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0031409: pigment binding	2.70E-19
10	GO:0016168: chlorophyll binding	6.11E-16
11	GO:0005515: protein binding	6.00E-05
12	GO:0080079: cellobiose glucosidase activity	9.33E-05
13	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	9.33E-05
14	GO:0046872: metal ion binding	1.92E-04
15	GO:0015180: L-alanine transmembrane transporter activity	2.20E-04
16	GO:0004707: MAP kinase activity	3.56E-04
17	GO:0004096: catalase activity	3.67E-04
18	GO:0046592: polyamine oxidase activity	3.67E-04
19	GO:0015189: L-lysine transmembrane transporter activity	5.28E-04
20	GO:0015181: arginine transmembrane transporter activity	5.28E-04
21	GO:0005313: L-glutamate transmembrane transporter activity	7.02E-04
22	GO:0000156: phosphorelay response regulator activity	8.05E-04
23	GO:0015297: antiporter activity	8.83E-04
24	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	8.88E-04
25	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	2.00E-03
26	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.25E-03
27	GO:0047372: acylglycerol lipase activity	3.09E-03
28	GO:0003677: DNA binding	3.33E-03
29	GO:0016787: hydrolase activity	3.42E-03
30	GO:0005315: inorganic phosphate transmembrane transporter activity	3.69E-03
31	GO:0008131: primary amine oxidase activity	4.01E-03
32	GO:0003712: transcription cofactor activity	4.33E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.69E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.12E-03
35	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	5.72E-03
36	GO:0005351: sugar:proton symporter activity	6.72E-03
37	GO:0008514: organic anion transmembrane transporter activity	6.85E-03
38	GO:0004843: thiol-dependent ubiquitin-specific protease activity	9.33E-03
39	GO:0004497: monooxygenase activity	1.32E-02
40	GO:0102483: scopolin beta-glucosidase activity	1.36E-02
41	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.56E-02
42	GO:0050897: cobalt ion binding	1.62E-02
43	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.73E-02
44	GO:0003993: acid phosphatase activity	1.78E-02
45	GO:0008422: beta-glucosidase activity	1.84E-02
46	GO:0042393: histone binding	1.89E-02
47	GO:0051537: 2 iron, 2 sulfur cluster binding	2.18E-02
48	GO:0005198: structural molecule activity	2.24E-02
49	GO:0015293: symporter activity	2.24E-02
50	GO:0015171: amino acid transmembrane transporter activity	2.75E-02
51	GO:0031625: ubiquitin protein ligase binding	2.75E-02
52	GO:0045735: nutrient reservoir activity	2.88E-02
53	GO:0020037: heme binding	3.09E-02
54	GO:0022857: transmembrane transporter activity	3.15E-02
55	GO:0016874: ligase activity	3.15E-02
56	GO:0003779: actin binding	3.21E-02
57	GO:0015035: protein disulfide oxidoreductase activity	3.35E-02
58	GO:0008270: zinc ion binding	4.35E-02
59	GO:0015144: carbohydrate transmembrane transporter activity	4.38E-02
60	GO:0016301: kinase activity	4.66E-02
61	GO:0019825: oxygen binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.70E-19
3	GO:0030076: light-harvesting complex	1.26E-14
4	GO:0010287: plastoglobule	1.82E-14
5	GO:0009579: thylakoid	8.03E-14
6	GO:0009535: chloroplast thylakoid membrane	1.29E-12
7	GO:0009941: chloroplast envelope	1.32E-12
8	GO:0009534: chloroplast thylakoid	2.24E-12
9	GO:0009523: photosystem II	1.02E-08
10	GO:0009517: PSII associated light-harvesting complex II	7.97E-06
11	GO:0042651: thylakoid membrane	9.77E-06
12	GO:0016020: membrane	3.20E-05
13	GO:0016021: integral component of membrane	5.16E-05
14	GO:0009507: chloroplast	6.45E-05
15	GO:0009898: cytoplasmic side of plasma membrane	7.02E-04
16	GO:0032586: protein storage vacuole membrane	7.02E-04
17	GO:0009533: chloroplast stromal thylakoid	1.51E-03
18	GO:0009538: photosystem I reaction center	1.75E-03
19	GO:0000326: protein storage vacuole	2.00E-03
20	GO:0005622: intracellular	3.32E-03
21	GO:0030095: chloroplast photosystem II	4.01E-03
22	GO:0009654: photosystem II oxygen evolving complex	5.36E-03
23	GO:0015629: actin cytoskeleton	6.47E-03
24	GO:0005777: peroxisome	8.49E-03
25	GO:0019898: extrinsic component of membrane	8.90E-03
26	GO:0000151: ubiquitin ligase complex	1.46E-02
27	GO:0000786: nucleosome	1.67E-02
28	GO:0031977: thylakoid lumen	1.95E-02
29	GO:0031966: mitochondrial membrane	2.43E-02
30	GO:0009706: chloroplast inner membrane	3.28E-02
31	GO:0022626: cytosolic ribosome	3.32E-02
32	GO:0005654: nucleoplasm	3.78E-02
33	GO:0009543: chloroplast thylakoid lumen	3.85E-02
34	GO:0005623: cell	3.93E-02