Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G30390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0048227: plasma membrane to endosome transport0.00E+00
2GO:0010241: ent-kaurene oxidation to kaurenoic acid0.00E+00
3GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0015833: peptide transport0.00E+00
6GO:0006105: succinate metabolic process0.00E+00
7GO:0019484: beta-alanine catabolic process0.00E+00
8GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
9GO:0006725: cellular aromatic compound metabolic process0.00E+00
10GO:0071578: zinc II ion transmembrane import0.00E+00
11GO:0019481: L-alanine catabolic process, by transamination0.00E+00
12GO:0042594: response to starvation3.91E-05
13GO:0016192: vesicle-mediated transport8.67E-05
14GO:0042742: defense response to bacterium1.91E-04
15GO:0098721: uracil import across plasma membrane2.36E-04
16GO:0098702: adenine import across plasma membrane2.36E-04
17GO:0046167: glycerol-3-phosphate biosynthetic process2.36E-04
18GO:0035266: meristem growth2.36E-04
19GO:0098710: guanine import across plasma membrane2.36E-04
20GO:0009450: gamma-aminobutyric acid catabolic process2.36E-04
21GO:0007292: female gamete generation2.36E-04
22GO:1990641: response to iron ion starvation2.36E-04
23GO:1903409: reactive oxygen species biosynthetic process2.36E-04
24GO:0000349: generation of catalytic spliceosome for first transesterification step2.36E-04
25GO:0009865: pollen tube adhesion2.36E-04
26GO:0035344: hypoxanthine transport2.36E-04
27GO:0071366: cellular response to indolebutyric acid stimulus2.36E-04
28GO:0006540: glutamate decarboxylation to succinate2.36E-04
29GO:0035494: SNARE complex disassembly2.36E-04
30GO:0046520: sphingoid biosynthetic process2.36E-04
31GO:0001666: response to hypoxia4.04E-04
32GO:0052544: defense response by callose deposition in cell wall5.11E-04
33GO:0019441: tryptophan catabolic process to kynurenine5.24E-04
34GO:0009308: amine metabolic process5.24E-04
35GO:0009257: 10-formyltetrahydrofolate biosynthetic process5.24E-04
36GO:0032509: endosome transport via multivesicular body sorting pathway5.24E-04
37GO:0010033: response to organic substance5.24E-04
38GO:0006641: triglyceride metabolic process5.24E-04
39GO:0009727: detection of ethylene stimulus5.24E-04
40GO:0006101: citrate metabolic process5.24E-04
41GO:0019483: beta-alanine biosynthetic process5.24E-04
42GO:0015865: purine nucleotide transport5.24E-04
43GO:0006212: uracil catabolic process5.24E-04
44GO:0042939: tripeptide transport5.24E-04
45GO:0051788: response to misfolded protein5.24E-04
46GO:1902000: homogentisate catabolic process5.24E-04
47GO:1900459: positive regulation of brassinosteroid mediated signaling pathway5.24E-04
48GO:0052542: defense response by callose deposition5.24E-04
49GO:0046686: response to cadmium ion6.01E-04
50GO:0002237: response to molecule of bacterial origin7.46E-04
51GO:0046786: viral replication complex formation and maintenance8.52E-04
52GO:0009410: response to xenobiotic stimulus8.52E-04
53GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway8.52E-04
54GO:0009072: aromatic amino acid family metabolic process8.52E-04
55GO:0060968: regulation of gene silencing8.52E-04
56GO:0042344: indole glucosinolate catabolic process8.52E-04
57GO:0019563: glycerol catabolic process8.52E-04
58GO:1900140: regulation of seedling development8.52E-04
59GO:0006882: cellular zinc ion homeostasis1.21E-03
60GO:0000578: embryonic axis specification1.21E-03
61GO:0006572: tyrosine catabolic process1.21E-03
62GO:0051259: protein oligomerization1.21E-03
63GO:0006624: vacuolar protein processing1.21E-03
64GO:0006020: inositol metabolic process1.21E-03
65GO:2001289: lipid X metabolic process1.21E-03
66GO:0070301: cellular response to hydrogen peroxide1.21E-03
67GO:0046902: regulation of mitochondrial membrane permeability1.21E-03
68GO:0009113: purine nucleobase biosynthetic process1.21E-03
69GO:0006072: glycerol-3-phosphate metabolic process1.21E-03
70GO:0006809: nitric oxide biosynthetic process1.21E-03
71GO:0009963: positive regulation of flavonoid biosynthetic process1.21E-03
72GO:0042938: dipeptide transport1.62E-03
73GO:0010222: stem vascular tissue pattern formation1.62E-03
74GO:0061088: regulation of sequestering of zinc ion1.62E-03
75GO:0006536: glutamate metabolic process1.62E-03
76GO:0010508: positive regulation of autophagy1.62E-03
77GO:0010188: response to microbial phytotoxin1.62E-03
78GO:0006878: cellular copper ion homeostasis1.62E-03
79GO:0048367: shoot system development1.96E-03
80GO:0010182: sugar mediated signaling pathway2.00E-03
81GO:0006623: protein targeting to vacuole2.31E-03
82GO:0050665: hydrogen peroxide biosynthetic process2.55E-03
83GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.55E-03
84GO:0015691: cadmium ion transport2.55E-03
85GO:0048827: phyllome development2.55E-03
86GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.55E-03
87GO:0048232: male gamete generation2.55E-03
88GO:0043248: proteasome assembly2.55E-03
89GO:0042732: D-xylose metabolic process2.55E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.55E-03
91GO:0010337: regulation of salicylic acid metabolic process2.55E-03
92GO:0007264: small GTPase mediated signal transduction2.63E-03
93GO:0071281: cellular response to iron ion2.81E-03
94GO:0006914: autophagy2.99E-03
95GO:0006694: steroid biosynthetic process3.06E-03
96GO:0048280: vesicle fusion with Golgi apparatus3.06E-03
97GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process3.61E-03
98GO:0010044: response to aluminum ion3.61E-03
99GO:0006955: immune response3.61E-03
100GO:0009395: phospholipid catabolic process3.61E-03
101GO:0070370: cellular heat acclimation3.61E-03
102GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.61E-03
103GO:0071669: plant-type cell wall organization or biogenesis3.61E-03
104GO:0006333: chromatin assembly or disassembly3.61E-03
105GO:0009396: folic acid-containing compound biosynthetic process3.61E-03
106GO:0009627: systemic acquired resistance3.97E-03
107GO:0006102: isocitrate metabolic process4.19E-03
108GO:0016559: peroxisome fission4.19E-03
109GO:0009061: anaerobic respiration4.19E-03
110GO:0009690: cytokinin metabolic process4.19E-03
111GO:0006605: protein targeting4.19E-03
112GO:0010078: maintenance of root meristem identity4.19E-03
113GO:0048364: root development4.47E-03
114GO:0008219: cell death4.64E-03
115GO:0010150: leaf senescence4.76E-03
116GO:0030968: endoplasmic reticulum unfolded protein response4.79E-03
117GO:0043562: cellular response to nitrogen levels4.79E-03
118GO:0006526: arginine biosynthetic process4.79E-03
119GO:0048767: root hair elongation4.87E-03
120GO:0010311: lateral root formation4.87E-03
121GO:0006499: N-terminal protein myristoylation5.11E-03
122GO:0006811: ion transport5.11E-03
123GO:0010043: response to zinc ion5.36E-03
124GO:0006098: pentose-phosphate shunt5.43E-03
125GO:0045087: innate immune response5.87E-03
126GO:0035999: tetrahydrofolate interconversion6.09E-03
127GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.09E-03
128GO:0008202: steroid metabolic process6.09E-03
129GO:0006099: tricarboxylic acid cycle6.14E-03
130GO:0048829: root cap development6.78E-03
131GO:0009641: shade avoidance6.78E-03
132GO:0006896: Golgi to vacuole transport6.78E-03
133GO:0006535: cysteine biosynthetic process from serine6.78E-03
134GO:0006378: mRNA polyadenylation7.50E-03
135GO:0010015: root morphogenesis7.50E-03
136GO:0043085: positive regulation of catalytic activity7.50E-03
137GO:0009640: photomorphogenesis7.57E-03
138GO:0000266: mitochondrial fission8.25E-03
139GO:0010105: negative regulation of ethylene-activated signaling pathway8.25E-03
140GO:0034605: cellular response to heat9.82E-03
141GO:0007034: vacuolar transport9.82E-03
142GO:0006541: glutamine metabolic process9.82E-03
143GO:0009933: meristem structural organization9.82E-03
144GO:0009723: response to ethylene1.00E-02
145GO:0090351: seedling development1.06E-02
146GO:0010053: root epidermal cell differentiation1.06E-02
147GO:0007031: peroxisome organization1.06E-02
148GO:0005985: sucrose metabolic process1.06E-02
149GO:0000162: tryptophan biosynthetic process1.15E-02
150GO:0034976: response to endoplasmic reticulum stress1.15E-02
151GO:0055114: oxidation-reduction process1.16E-02
152GO:0006096: glycolytic process1.21E-02
153GO:0019344: cysteine biosynthetic process1.24E-02
154GO:0007010: cytoskeleton organization1.24E-02
155GO:0009626: plant-type hypersensitive response1.29E-02
156GO:0016575: histone deacetylation1.32E-02
157GO:0015031: protein transport1.34E-02
158GO:0045454: cell redox homeostasis1.37E-02
159GO:0018105: peptidyl-serine phosphorylation1.50E-02
160GO:0031348: negative regulation of defense response1.51E-02
161GO:0030433: ubiquitin-dependent ERAD pathway1.51E-02
162GO:0040007: growth1.61E-02
163GO:0001944: vasculature development1.61E-02
164GO:0009625: response to insect1.61E-02
165GO:0071215: cellular response to abscisic acid stimulus1.61E-02
166GO:0009686: gibberellin biosynthetic process1.61E-02
167GO:0042147: retrograde transport, endosome to Golgi1.80E-02
168GO:0015991: ATP hydrolysis coupled proton transport1.91E-02
169GO:0042631: cellular response to water deprivation1.91E-02
170GO:0000271: polysaccharide biosynthetic process1.91E-02
171GO:0008360: regulation of cell shape2.01E-02
172GO:0010154: fruit development2.01E-02
173GO:0061025: membrane fusion2.12E-02
174GO:0048544: recognition of pollen2.12E-02
175GO:0010183: pollen tube guidance2.23E-02
176GO:0006635: fatty acid beta-oxidation2.34E-02
177GO:0006891: intra-Golgi vesicle-mediated transport2.34E-02
178GO:0009630: gravitropism2.45E-02
179GO:0006468: protein phosphorylation2.56E-02
180GO:0010252: auxin homeostasis2.68E-02
181GO:0009651: response to salt stress2.71E-02
182GO:0010286: heat acclimation2.80E-02
183GO:0007166: cell surface receptor signaling pathway2.89E-02
184GO:0010468: regulation of gene expression3.02E-02
185GO:0016126: sterol biosynthetic process3.04E-02
186GO:0009816: defense response to bacterium, incompatible interaction3.16E-02
187GO:0006888: ER to Golgi vesicle-mediated transport3.41E-02
188GO:0006950: response to stress3.41E-02
189GO:0048573: photoperiodism, flowering3.41E-02
190GO:0009817: defense response to fungus, incompatible interaction3.67E-02
191GO:0030244: cellulose biosynthetic process3.67E-02
192GO:0009832: plant-type cell wall biogenesis3.80E-02
193GO:0035556: intracellular signal transduction3.92E-02
194GO:0010119: regulation of stomatal movement4.07E-02
195GO:0051301: cell division4.08E-02
196GO:0006839: mitochondrial transport4.76E-02
197GO:0080167: response to karrikin4.82E-02
RankGO TermAdjusted P value
1GO:0008777: acetylornithine deacetylase activity0.00E+00
2GO:0047205: quinate O-hydroxycinnamoyltransferase activity0.00E+00
3GO:0047172: shikimate O-hydroxycinnamoyltransferase activity0.00E+00
4GO:0019211: phosphatase activator activity0.00E+00
5GO:0009045: xylose isomerase activity0.00E+00
6GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity0.00E+00
7GO:0016701: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen0.00E+00
8GO:0052615: ent-kaurene oxidase activity0.00E+00
9GO:0052616: ent-kaur-16-en-19-ol oxidase activity0.00E+00
10GO:0015197: peptide transporter activity0.00E+00
11GO:0004334: fumarylacetoacetase activity0.00E+00
12GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
13GO:0004370: glycerol kinase activity0.00E+00
14GO:0015334: high-affinity oligopeptide transporter activity0.00E+00
15GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
16GO:0052617: ent-kaur-16-en-19-al oxidase activity0.00E+00
17GO:0000170: sphingosine hydroxylase activity2.36E-04
18GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity2.36E-04
19GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity2.36E-04
20GO:0001530: lipopolysaccharide binding2.36E-04
21GO:0052595: aliphatic-amine oxidase activity2.36E-04
22GO:0015208: guanine transmembrane transporter activity2.36E-04
23GO:0004112: cyclic-nucleotide phosphodiesterase activity2.36E-04
24GO:0015294: solute:cation symporter activity2.36E-04
25GO:0003867: 4-aminobutyrate transaminase activity2.36E-04
26GO:0015207: adenine transmembrane transporter activity2.36E-04
27GO:0030544: Hsp70 protein binding2.36E-04
28GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity2.36E-04
29GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity3.78E-04
30GO:0004566: beta-glucuronidase activity5.24E-04
31GO:0003994: aconitate hydratase activity5.24E-04
32GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity5.24E-04
33GO:0004477: methenyltetrahydrofolate cyclohydrolase activity5.24E-04
34GO:0038199: ethylene receptor activity5.24E-04
35GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity5.24E-04
36GO:0004061: arylformamidase activity5.24E-04
37GO:0004329: formate-tetrahydrofolate ligase activity5.24E-04
38GO:0042284: sphingolipid delta-4 desaturase activity5.24E-04
39GO:0019200: carbohydrate kinase activity5.24E-04
40GO:0042937: tripeptide transporter activity5.24E-04
41GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding5.24E-04
42GO:0050897: cobalt ion binding6.81E-04
43GO:0016301: kinase activity6.85E-04
44GO:0005483: soluble NSF attachment protein activity8.52E-04
45GO:0005093: Rab GDP-dissociation inhibitor activity8.52E-04
46GO:0005047: signal recognition particle binding8.52E-04
47GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity8.52E-04
48GO:0051740: ethylene binding1.21E-03
49GO:0048027: mRNA 5'-UTR binding1.21E-03
50GO:0015086: cadmium ion transmembrane transporter activity1.21E-03
51GO:0004108: citrate (Si)-synthase activity1.21E-03
52GO:0030527: structural constituent of chromatin1.21E-03
53GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.21E-03
54GO:0004834: tryptophan synthase activity1.62E-03
55GO:0004737: pyruvate decarboxylase activity1.62E-03
56GO:0042936: dipeptide transporter activity1.62E-03
57GO:0019905: syntaxin binding1.62E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.62E-03
59GO:0015210: uracil transmembrane transporter activity1.62E-03
60GO:0016004: phospholipase activator activity1.62E-03
61GO:0005471: ATP:ADP antiporter activity2.07E-03
62GO:0002020: protease binding2.07E-03
63GO:0008198: ferrous iron binding2.07E-03
64GO:0030976: thiamine pyrophosphate binding2.55E-03
65GO:0004029: aldehyde dehydrogenase (NAD) activity2.55E-03
66GO:0015562: efflux transmembrane transporter activity2.55E-03
67GO:0036402: proteasome-activating ATPase activity2.55E-03
68GO:0005524: ATP binding2.82E-03
69GO:0004124: cysteine synthase activity3.06E-03
70GO:0051753: mannan synthase activity3.06E-03
71GO:0008237: metallopeptidase activity3.17E-03
72GO:0016831: carboxy-lyase activity3.61E-03
73GO:0004525: ribonuclease III activity4.19E-03
74GO:0008142: oxysterol binding4.79E-03
75GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.79E-03
76GO:0005507: copper ion binding4.80E-03
77GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.43E-03
78GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.43E-03
79GO:0000989: transcription factor activity, transcription factor binding5.43E-03
80GO:0030955: potassium ion binding6.09E-03
81GO:0004743: pyruvate kinase activity6.09E-03
82GO:0045309: protein phosphorylated amino acid binding6.09E-03
83GO:0004673: protein histidine kinase activity6.78E-03
84GO:0019904: protein domain specific binding7.50E-03
85GO:0004521: endoribonuclease activity8.25E-03
86GO:0000976: transcription regulatory region sequence-specific DNA binding8.25E-03
87GO:0000155: phosphorelay sensor kinase activity9.02E-03
88GO:0008081: phosphoric diester hydrolase activity9.02E-03
89GO:0004175: endopeptidase activity9.82E-03
90GO:0008131: primary amine oxidase activity9.82E-03
91GO:0017025: TBP-class protein binding1.06E-02
92GO:0005385: zinc ion transmembrane transporter activity1.24E-02
93GO:0004407: histone deacetylase activity1.24E-02
94GO:0043424: protein histidine kinase binding1.32E-02
95GO:0008324: cation transmembrane transporter activity1.32E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity1.42E-02
97GO:0004707: MAP kinase activity1.42E-02
98GO:0016779: nucleotidyltransferase activity1.51E-02
99GO:0016760: cellulose synthase (UDP-forming) activity1.61E-02
100GO:0003756: protein disulfide isomerase activity1.70E-02
101GO:0005516: calmodulin binding1.85E-02
102GO:0030276: clathrin binding2.01E-02
103GO:0030170: pyridoxal phosphate binding2.03E-02
104GO:0004872: receptor activity2.23E-02
105GO:0004674: protein serine/threonine kinase activity2.30E-02
106GO:0048038: quinone binding2.34E-02
107GO:0004197: cysteine-type endopeptidase activity2.45E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.56E-02
109GO:0000156: phosphorelay response regulator activity2.56E-02
110GO:0016759: cellulose synthase activity2.68E-02
111GO:0005200: structural constituent of cytoskeleton2.80E-02
112GO:0005506: iron ion binding2.81E-02
113GO:0051213: dioxygenase activity3.04E-02
114GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.21E-02
115GO:0042802: identical protein binding3.21E-02
116GO:0009931: calcium-dependent protein serine/threonine kinase activity3.29E-02
117GO:0005215: transporter activity3.33E-02
118GO:0030247: polysaccharide binding3.41E-02
119GO:0004683: calmodulin-dependent protein kinase activity3.41E-02
120GO:0004806: triglyceride lipase activity3.41E-02
121GO:0005096: GTPase activator activity3.80E-02
122GO:0000287: magnesium ion binding3.83E-02
123GO:0004222: metalloendopeptidase activity3.93E-02
124GO:0003993: acid phosphatase activity4.48E-02
125GO:0000149: SNARE binding4.62E-02
126GO:0051539: 4 iron, 4 sulfur cluster binding4.76E-02
127GO:0005515: protein binding4.84E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0005783: endoplasmic reticulum1.35E-05
3GO:0005794: Golgi apparatus1.42E-05
4GO:0000323: lytic vacuole2.15E-05
5GO:0005774: vacuolar membrane3.80E-05
6GO:0016021: integral component of membrane6.81E-05
7GO:0005886: plasma membrane1.32E-04
8GO:0005773: vacuole2.05E-04
9GO:0034045: pre-autophagosomal structure membrane2.63E-04
10GO:0042406: extrinsic component of endoplasmic reticulum membrane8.52E-04
11GO:0005849: mRNA cleavage factor complex1.21E-03
12GO:0071006: U2-type catalytic step 1 spliceosome1.21E-03
13GO:0033179: proton-transporting V-type ATPase, V0 domain1.62E-03
14GO:0005789: endoplasmic reticulum membrane1.88E-03
15GO:0010008: endosome membrane1.96E-03
16GO:0005770: late endosome2.00E-03
17GO:0000974: Prp19 complex2.55E-03
18GO:0030140: trans-Golgi network transport vesicle2.55E-03
19GO:0031597: cytosolic proteasome complex3.06E-03
20GO:0030173: integral component of Golgi membrane3.06E-03
21GO:0031595: nuclear proteasome complex3.61E-03
22GO:0009506: plasmodesma3.80E-03
23GO:0012507: ER to Golgi transport vesicle membrane4.19E-03
24GO:0005779: integral component of peroxisomal membrane4.79E-03
25GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.79E-03
26GO:0000325: plant-type vacuole5.36E-03
27GO:0005802: trans-Golgi network5.90E-03
28GO:0008540: proteasome regulatory particle, base subcomplex6.09E-03
29GO:0005737: cytoplasm6.52E-03
30GO:0031201: SNARE complex6.98E-03
31GO:0005884: actin filament7.50E-03
32GO:0005765: lysosomal membrane7.50E-03
33GO:0005829: cytosol1.53E-02
34GO:0030136: clathrin-coated vesicle1.80E-02
35GO:0005759: mitochondrial matrix2.30E-02
36GO:0000785: chromatin2.45E-02
37GO:0005768: endosome2.46E-02
38GO:0009705: plant-type vacuole membrane2.53E-02
39GO:0005778: peroxisomal membrane2.80E-02
40GO:0005615: extracellular space2.83E-02
41GO:0009707: chloroplast outer membrane3.67E-02
42GO:0000786: nucleosome4.20E-02
43GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.28E-02
44GO:0005777: peroxisome4.34E-02
45GO:0031902: late endosome membrane4.90E-02
Gene type



Gene DE type