co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G29760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042906: xanthine transport	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:0071311: cellular response to acetate	0.00E+00
5	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
6	GO:0071260: cellular response to mechanical stimulus	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	2.72E-05
8	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	5.34E-05
9	GO:0032958: inositol phosphate biosynthetic process	5.34E-05
10	GO:0006475: internal protein amino acid acetylation	5.34E-05
11	GO:0006474: N-terminal protein amino acid acetylation	5.34E-05
12	GO:0017198: N-terminal peptidyl-serine acetylation	5.34E-05
13	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	5.34E-05
14	GO:0015857: uracil transport	1.30E-04
15	GO:0015720: allantoin transport	1.30E-04
16	GO:0051262: protein tetramerization	1.30E-04
17	GO:0010017: red or far-red light signaling pathway	1.84E-04
18	GO:0071230: cellular response to amino acid stimulus	2.22E-04
19	GO:0090153: regulation of sphingolipid biosynthetic process	2.22E-04
20	GO:1902448: positive regulation of shade avoidance	2.22E-04
21	GO:0071705: nitrogen compound transport	2.22E-04
22	GO:0070417: cellular response to cold	2.40E-04
23	GO:0031936: negative regulation of chromatin silencing	3.25E-04
24	GO:0006020: inositol metabolic process	3.25E-04
25	GO:0044211: CTP salvage	3.25E-04
26	GO:1901657: glycosyl compound metabolic process	3.96E-04
27	GO:0010600: regulation of auxin biosynthetic process	4.35E-04
28	GO:0044206: UMP salvage	4.35E-04
29	GO:0009416: response to light stimulus	4.52E-04
30	GO:0016123: xanthophyll biosynthetic process	5.52E-04
31	GO:0043097: pyrimidine nucleoside salvage	5.52E-04
32	GO:0009817: defense response to fungus, incompatible interaction	6.46E-04
33	GO:0006206: pyrimidine nucleobase metabolic process	6.76E-04
34	GO:0009723: response to ethylene	7.70E-04
35	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	8.05E-04
36	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.05E-04
37	GO:0010038: response to metal ion	9.40E-04
38	GO:0010161: red light signaling pathway	9.40E-04
39	GO:0080111: DNA demethylation	9.40E-04
40	GO:0015979: photosynthesis	9.86E-04
41	GO:0010114: response to red light	1.03E-03
42	GO:0009704: de-etiolation	1.08E-03
43	GO:0010928: regulation of auxin mediated signaling pathway	1.08E-03
44	GO:0010099: regulation of photomorphogenesis	1.23E-03
45	GO:0009827: plant-type cell wall modification	1.23E-03
46	GO:0042761: very long-chain fatty acid biosynthetic process	1.54E-03
47	GO:0008356: asymmetric cell division	1.54E-03
48	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.54E-03
49	GO:0009688: abscisic acid biosynthetic process	1.71E-03
50	GO:0009641: shade avoidance	1.71E-03
51	GO:0055114: oxidation-reduction process	1.74E-03
52	GO:0030148: sphingolipid biosynthetic process	1.88E-03
53	GO:0006816: calcium ion transport	1.88E-03
54	GO:0009718: anthocyanin-containing compound biosynthetic process	2.25E-03
55	GO:0009266: response to temperature stimulus	2.43E-03
56	GO:0005975: carbohydrate metabolic process	2.45E-03
57	GO:0090351: seedling development	2.63E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	2.83E-03
59	GO:0009768: photosynthesis, light harvesting in photosystem I	3.24E-03
60	GO:0006874: cellular calcium ion homeostasis	3.24E-03
61	GO:0007623: circadian rhythm	3.30E-03
62	GO:0019722: calcium-mediated signaling	4.13E-03
63	GO:0034220: ion transmembrane transport	4.60E-03
64	GO:0010182: sugar mediated signaling pathway	4.84E-03
65	GO:0009658: chloroplast organization	5.09E-03
66	GO:0006814: sodium ion transport	5.09E-03
67	GO:0006970: response to osmotic stress	5.48E-03
68	GO:0000302: response to reactive oxygen species	5.60E-03
69	GO:0080167: response to karrikin	6.31E-03
70	GO:0016126: sterol biosynthetic process	7.22E-03
71	GO:0048573: photoperiodism, flowering	8.09E-03
72	GO:0009651: response to salt stress	8.16E-03
73	GO:0018298: protein-chromophore linkage	8.68E-03
74	GO:0000160: phosphorelay signal transduction system	8.99E-03
75	GO:0010218: response to far red light	9.30E-03
76	GO:0006629: lipid metabolic process	9.31E-03
77	GO:0006355: regulation of transcription, DNA-templated	9.57E-03
78	GO:0007568: aging	9.61E-03
79	GO:0009631: cold acclimation	9.61E-03
80	GO:0006865: amino acid transport	9.93E-03
81	GO:0016051: carbohydrate biosynthetic process	1.02E-02
82	GO:0009637: response to blue light	1.02E-02
83	GO:0042542: response to hydrogen peroxide	1.19E-02
84	GO:0051707: response to other organism	1.23E-02
85	GO:0009640: photomorphogenesis	1.23E-02
86	GO:0009585: red, far-red light phototransduction	1.51E-02
87	GO:0009909: regulation of flower development	1.63E-02
88	GO:0009611: response to wounding	1.69E-02
89	GO:0009624: response to nematode	1.94E-02
90	GO:0006351: transcription, DNA-templated	2.00E-02
91	GO:0009058: biosynthetic process	2.37E-02
92	GO:0006413: translational initiation	2.73E-02
93	GO:0010228: vegetative to reproductive phase transition of meristem	2.96E-02
94	GO:0010468: regulation of gene expression	3.25E-02
95	GO:0009414: response to water deprivation	3.28E-02
96	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.71E-02
97	GO:0009826: unidimensional cell growth	3.81E-02
98	GO:0007049: cell cycle	4.23E-02
99	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.67E-02
100	GO:0044550: secondary metabolite biosynthetic process	4.84E-02
101	GO:0006810: transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0015276: ligand-gated ion channel activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0052631: sphingolipid delta-8 desaturase activity	5.34E-05
12	GO:0008158: hedgehog receptor activity	5.34E-05
13	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	5.34E-05
14	GO:0000829: inositol heptakisphosphate kinase activity	5.34E-05
15	GO:0005227: calcium activated cation channel activity	5.34E-05
16	GO:0080079: cellobiose glucosidase activity	5.34E-05
17	GO:1990189: peptide-serine-N-acetyltransferase activity	5.34E-05
18	GO:0008066: glutamate receptor activity	5.34E-05
19	GO:0000828: inositol hexakisphosphate kinase activity	5.34E-05
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	5.34E-05
21	GO:1990190: peptide-glutamate-N-acetyltransferase activity	5.34E-05
22	GO:0016630: protochlorophyllide reductase activity	1.30E-04
23	GO:0005274: allantoin uptake transmembrane transporter activity	1.30E-04
24	GO:0000254: C-4 methylsterol oxidase activity	3.25E-04
25	GO:0009011: starch synthase activity	4.35E-04
26	GO:0005253: anion channel activity	4.35E-04
27	GO:0004845: uracil phosphoribosyltransferase activity	4.35E-04
28	GO:0015210: uracil transmembrane transporter activity	4.35E-04
29	GO:0102483: scopolin beta-glucosidase activity	5.86E-04
30	GO:0004462: lactoylglutathione lyase activity	6.76E-04
31	GO:0005247: voltage-gated chloride channel activity	6.76E-04
32	GO:0004849: uridine kinase activity	8.05E-04
33	GO:0004602: glutathione peroxidase activity	8.05E-04
34	GO:0005261: cation channel activity	8.05E-04
35	GO:0008422: beta-glucosidase activity	8.82E-04
36	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.23E-03
37	GO:0000989: transcription factor activity, transcription factor binding	1.38E-03
38	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.38E-03
39	GO:0071949: FAD binding	1.38E-03
40	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.71E-03
41	GO:0047372: acylglycerol lipase activity	1.88E-03
42	GO:0004022: alcohol dehydrogenase (NAD) activity	2.25E-03
43	GO:0005315: inorganic phosphate transmembrane transporter activity	2.25E-03
44	GO:0005262: calcium channel activity	2.25E-03
45	GO:0004565: beta-galactosidase activity	2.25E-03
46	GO:0003712: transcription cofactor activity	2.63E-03
47	GO:0004970: ionotropic glutamate receptor activity	2.63E-03
48	GO:0005217: intracellular ligand-gated ion channel activity	2.63E-03
49	GO:0031409: pigment binding	2.83E-03
50	GO:0004707: MAP kinase activity	3.46E-03
51	GO:0008514: organic anion transmembrane transporter activity	4.13E-03
52	GO:0008080: N-acetyltransferase activity	4.84E-03
53	GO:0000156: phosphorelay response regulator activity	6.12E-03
54	GO:0016168: chlorophyll binding	7.50E-03
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.59E-03
56	GO:0008375: acetylglucosaminyltransferase activity	7.79E-03
57	GO:0016491: oxidoreductase activity	9.64E-03
58	GO:0003993: acid phosphatase activity	1.06E-02
59	GO:0003677: DNA binding	1.12E-02
60	GO:0042393: histone binding	1.12E-02
61	GO:0015293: symporter activity	1.33E-02
62	GO:0015171: amino acid transmembrane transporter activity	1.63E-02
63	GO:0046872: metal ion binding	1.96E-02
64	GO:0016746: transferase activity, transferring acyl groups	1.98E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.19E-02
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.32E-02
67	GO:0016829: lyase activity	2.41E-02
68	GO:0015144: carbohydrate transmembrane transporter activity	2.59E-02
69	GO:0005351: sugar:proton symporter activity	2.82E-02
70	GO:0003743: translation initiation factor activity	3.20E-02
71	GO:0005506: iron ion binding	3.30E-02
72	GO:0005215: transporter activity	3.71E-02
73	GO:0008168: methyltransferase activity	3.81E-02
74	GO:0003682: chromatin binding	4.07E-02
75	GO:0004497: monooxygenase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.92E-05
2	GO:0009941: chloroplast envelope	3.82E-05
3	GO:0009534: chloroplast thylakoid	8.10E-05
4	GO:0031415: NatA complex	1.30E-04
5	GO:0034707: chloride channel complex	6.76E-04
6	GO:0009538: photosystem I reaction center	1.08E-03
7	GO:0009507: chloroplast	1.43E-03
8	GO:0010287: plastoglobule	2.28E-03
9	GO:0009579: thylakoid	3.49E-03
10	GO:0009522: photosystem I	5.09E-03
11	GO:0009523: photosystem II	5.34E-03
12	GO:0009707: chloroplast outer membrane	8.68E-03
13	GO:0005789: endoplasmic reticulum membrane	1.17E-02
14	GO:0016021: integral component of membrane	1.19E-02
15	GO:0022626: cytosolic ribosome	1.59E-02
16	GO:0016607: nuclear speck	1.74E-02
17	GO:0016020: membrane	1.79E-02
18	GO:0009706: chloroplast inner membrane	1.94E-02
19	GO:0005618: cell wall	3.85E-02
20	GO:0031969: chloroplast membrane	4.56E-02