co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G29590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901038: cyanidin 3-O-glucoside metabolic process	0.00E+00
2	GO:0010411: xyloglucan metabolic process	6.71E-06
3	GO:0042546: cell wall biogenesis	1.95E-05
4	GO:0050691: regulation of defense response to virus by host	2.76E-05
5	GO:1901537: positive regulation of DNA demethylation	2.76E-05
6	GO:0009962: regulation of flavonoid biosynthetic process	2.76E-05
7	GO:2000029: regulation of proanthocyanidin biosynthetic process	2.76E-05
8	GO:0009718: anthocyanin-containing compound biosynthetic process	3.08E-05
9	GO:0031542: positive regulation of anthocyanin biosynthetic process	7.01E-05
10	GO:0071395: cellular response to jasmonic acid stimulus	7.01E-05
11	GO:0040007: growth	8.11E-05
12	GO:0010581: regulation of starch biosynthetic process	1.23E-04
13	GO:0009828: plant-type cell wall loosening	1.79E-04
14	GO:0009826: unidimensional cell growth	2.04E-04
15	GO:0009813: flavonoid biosynthetic process	2.99E-04
16	GO:0016131: brassinosteroid metabolic process	3.18E-04
17	GO:0071368: cellular response to cytokinin stimulus	3.18E-04
18	GO:1902456: regulation of stomatal opening	3.92E-04
19	GO:0042732: D-xylose metabolic process	3.92E-04
20	GO:0070413: trehalose metabolism in response to stress	6.32E-04
21	GO:0019432: triglyceride biosynthetic process	8.07E-04
22	GO:0043069: negative regulation of programmed cell death	9.92E-04
23	GO:0000038: very long-chain fatty acid metabolic process	1.09E-03
24	GO:0010540: basipetal auxin transport	1.40E-03
25	GO:0002237: response to molecule of bacterial origin	1.40E-03
26	GO:0005985: sucrose metabolic process	1.50E-03
27	GO:0006636: unsaturated fatty acid biosynthetic process	1.62E-03
28	GO:2000377: regulation of reactive oxygen species metabolic process	1.73E-03
29	GO:0005992: trehalose biosynthetic process	1.73E-03
30	GO:0019953: sexual reproduction	1.85E-03
31	GO:0010026: trichome differentiation	1.85E-03
32	GO:0016998: cell wall macromolecule catabolic process	1.97E-03
33	GO:0055114: oxidation-reduction process	2.02E-03
34	GO:0009411: response to UV	2.22E-03
35	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.22E-03
36	GO:0071555: cell wall organization	2.32E-03
37	GO:0010214: seed coat development	2.35E-03
38	GO:0000271: polysaccharide biosynthetic process	2.61E-03
39	GO:0010118: stomatal movement	2.61E-03
40	GO:0009741: response to brassinosteroid	2.74E-03
41	GO:0045489: pectin biosynthetic process	2.74E-03
42	GO:0046777: protein autophosphorylation	2.93E-03
43	GO:0044550: secondary metabolite biosynthetic process	2.98E-03
44	GO:0045454: cell redox homeostasis	3.27E-03
45	GO:0010583: response to cyclopentenone	3.31E-03
46	GO:0001666: response to hypoxia	4.06E-03
47	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.22E-03
48	GO:0010119: regulation of stomatal movement	5.38E-03
49	GO:0009867: jasmonic acid mediated signaling pathway	5.73E-03
50	GO:0016051: carbohydrate biosynthetic process	5.73E-03
51	GO:0035556: intracellular signal transduction	7.51E-03
52	GO:0031347: regulation of defense response	7.79E-03
53	GO:0009664: plant-type cell wall organization	7.99E-03
54	GO:0048316: seed development	9.65E-03
55	GO:0042744: hydrogen peroxide catabolic process	1.38E-02
56	GO:0042742: defense response to bacterium	1.45E-02
57	GO:0006633: fatty acid biosynthetic process	1.48E-02
58	GO:0040008: regulation of growth	1.53E-02
59	GO:0006355: regulation of transcription, DNA-templated	1.79E-02
60	GO:0006351: transcription, DNA-templated	2.13E-02
61	GO:0006970: response to osmotic stress	2.27E-02
62	GO:0048366: leaf development	2.42E-02
63	GO:0080167: response to karrikin	2.51E-02
64	GO:0010200: response to chitin	2.58E-02
65	GO:0009737: response to abscisic acid	3.09E-02
66	GO:0009751: response to salicylic acid	3.29E-02
67	GO:0006629: lipid metabolic process	3.32E-02
68	GO:0009873: ethylene-activated signaling pathway	3.98E-02
69	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.05E-02
70	GO:0009734: auxin-activated signaling pathway	4.24E-02
71	GO:0009651: response to salt stress	4.84E-02
72	GO:0009738: abscisic acid-activated signaling pathway	4.87E-02
73	GO:0009416: response to light stimulus	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0090411: brassinosteroid binding	0.00E+00
2	GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity	0.00E+00
3	GO:0047890: flavanone 4-reductase activity	0.00E+00
4	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
5	GO:0045552: dihydrokaempferol 4-reductase activity	0.00E+00
6	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.64E-06
7	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.71E-06
8	GO:0080132: fatty acid alpha-hydroxylase activity	2.76E-05
9	GO:0005506: iron ion binding	3.48E-04
10	GO:0035252: UDP-xylosyltransferase activity	3.92E-04
11	GO:0019899: enzyme binding	5.49E-04
12	GO:0020037: heme binding	7.18E-04
13	GO:0004805: trehalose-phosphatase activity	9.92E-04
14	GO:0008327: methyl-CpG binding	1.09E-03
15	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.19E-03
16	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.36E-03
17	GO:0019825: oxygen binding	1.49E-03
18	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.09E-03
19	GO:0016757: transferase activity, transferring glycosyl groups	2.27E-03
20	GO:0050662: coenzyme binding	2.88E-03
21	GO:0016791: phosphatase activity	3.60E-03
22	GO:0004672: protein kinase activity	3.77E-03
23	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.38E-03
24	GO:0004806: triglyceride lipase activity	4.54E-03
25	GO:0031625: ubiquitin protein ligase binding	9.01E-03
26	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	9.65E-03
27	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.01E-02
28	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.01E-02
29	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
30	GO:0016758: transferase activity, transferring hexosyl groups	1.24E-02
31	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.28E-02
32	GO:0004674: protein serine/threonine kinase activity	1.75E-02
33	GO:0042802: identical protein binding	1.88E-02
34	GO:0046983: protein dimerization activity	1.93E-02
35	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.03E-02
36	GO:0004601: peroxidase activity	2.16E-02
37	GO:0004497: monooxygenase activity	2.51E-02
38	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.86E-02
39	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.02E-02
40	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.09E-02
41	GO:0009055: electron carrier activity	3.49E-02

Rank	GO Term	Adjusted P value
1	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.23E-04
2	GO:0010369: chromocenter	4.69E-04
3	GO:0048046: apoplast	5.10E-04
4	GO:0005618: cell wall	5.94E-04
5	GO:0005615: extracellular space	1.62E-03
6	GO:0005794: Golgi apparatus	2.32E-03
7	GO:0009505: plant-type cell wall	3.09E-03
8	GO:0005576: extracellular region	9.71E-03
9	GO:0005789: endoplasmic reticulum membrane	2.21E-02
10	GO:0043231: intracellular membrane-bounded organelle	3.56E-02
11	GO:0005887: integral component of plasma membrane	4.13E-02