Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
2GO:0006105: succinate metabolic process0.00E+00
3GO:0036258: multivesicular body assembly0.00E+00
4GO:0071578: zinc II ion transmembrane import0.00E+00
5GO:0019484: beta-alanine catabolic process0.00E+00
6GO:0009865: pollen tube adhesion2.19E-05
7GO:0006540: glutamate decarboxylation to succinate2.19E-05
8GO:0048455: stamen formation2.19E-05
9GO:0009450: gamma-aminobutyric acid catabolic process2.19E-05
10GO:0046520: sphingoid biosynthetic process2.19E-05
11GO:0010033: response to organic substance5.64E-05
12GO:0019374: galactolipid metabolic process5.64E-05
13GO:0051788: response to misfolded protein5.64E-05
14GO:0009727: detection of ethylene stimulus5.64E-05
15GO:1900140: regulation of seedling development9.94E-05
16GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.94E-05
17GO:0010498: proteasomal protein catabolic process9.94E-05
18GO:1900055: regulation of leaf senescence9.94E-05
19GO:0071786: endoplasmic reticulum tubular network organization1.49E-04
20GO:0070676: intralumenal vesicle formation1.49E-04
21GO:0006020: inositol metabolic process1.49E-04
22GO:2001289: lipid X metabolic process1.49E-04
23GO:0070301: cellular response to hydrogen peroxide1.49E-04
24GO:0006536: glutamate metabolic process2.04E-04
25GO:0061088: regulation of sequestering of zinc ion2.04E-04
26GO:0048767: root hair elongation2.22E-04
27GO:0010119: regulation of stomatal movement2.46E-04
28GO:0050665: hydrogen peroxide biosynthetic process3.24E-04
29GO:0043248: proteasome assembly3.24E-04
30GO:0010358: leaf shaping3.24E-04
31GO:0046470: phosphatidylcholine metabolic process4.56E-04
32GO:0048528: post-embryonic root development4.56E-04
33GO:0009690: cytokinin metabolic process5.25E-04
34GO:0006644: phospholipid metabolic process5.25E-04
35GO:0006972: hyperosmotic response5.98E-04
36GO:0009845: seed germination8.75E-04
37GO:0052544: defense response by callose deposition in cell wall9.07E-04
38GO:0010105: negative regulation of ethylene-activated signaling pathway9.89E-04
39GO:0055046: microgametogenesis1.07E-03
40GO:0010150: leaf senescence1.10E-03
41GO:0006541: glutamine metabolic process1.16E-03
42GO:0002237: response to molecule of bacterial origin1.16E-03
43GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.22E-03
44GO:0010053: root epidermal cell differentiation1.25E-03
45GO:0005985: sucrose metabolic process1.25E-03
46GO:0009651: response to salt stress1.42E-03
47GO:2000377: regulation of reactive oxygen species metabolic process1.43E-03
48GO:0007010: cytoskeleton organization1.43E-03
49GO:0001944: vasculature development1.83E-03
50GO:0009625: response to insect1.83E-03
51GO:0009733: response to auxin1.86E-03
52GO:0009561: megagametogenesis1.94E-03
53GO:0048366: leaf development1.96E-03
54GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.04E-03
55GO:0010182: sugar mediated signaling pathway2.26E-03
56GO:0010154: fruit development2.26E-03
57GO:0048544: recognition of pollen2.38E-03
58GO:0055072: iron ion homeostasis2.49E-03
59GO:0010183: pollen tube guidance2.49E-03
60GO:0006891: intra-Golgi vesicle-mediated transport2.61E-03
61GO:0030163: protein catabolic process2.85E-03
62GO:0071281: cellular response to iron ion2.85E-03
63GO:0016042: lipid catabolic process2.94E-03
64GO:0006914: autophagy2.97E-03
65GO:0009408: response to heat3.03E-03
66GO:0048364: root development3.16E-03
67GO:0010029: regulation of seed germination3.47E-03
68GO:0006974: cellular response to DNA damage stimulus3.60E-03
69GO:0009873: ethylene-activated signaling pathway3.89E-03
70GO:0009737: response to abscisic acid4.17E-03
71GO:0010043: response to zinc ion4.42E-03
72GO:0006839: mitochondrial transport5.15E-03
73GO:0006631: fatty acid metabolic process5.30E-03
74GO:0009744: response to sucrose5.60E-03
75GO:0051707: response to other organism5.60E-03
76GO:0009640: photomorphogenesis5.60E-03
77GO:0000209: protein polyubiquitination5.75E-03
78GO:0051301: cell division5.81E-03
79GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process6.39E-03
80GO:0006812: cation transport6.55E-03
81GO:0009809: lignin biosynthetic process6.88E-03
82GO:0006096: glycolytic process7.73E-03
83GO:0048367: shoot system development7.90E-03
84GO:0018105: peptidyl-serine phosphorylation8.97E-03
85GO:0051726: regulation of cell cycle9.16E-03
86GO:0040008: regulation of growth1.25E-02
87GO:0015031: protein transport1.38E-02
88GO:0009739: response to gibberellin1.40E-02
89GO:0006470: protein dephosphorylation1.42E-02
90GO:0046686: response to cadmium ion1.69E-02
91GO:0009860: pollen tube growth1.86E-02
92GO:0009723: response to ethylene1.95E-02
93GO:0006468: protein phosphorylation2.14E-02
94GO:0046777: protein autophosphorylation2.15E-02
95GO:0009735: response to cytokinin3.82E-02
96GO:0009738: abscisic acid-activated signaling pathway3.98E-02
97GO:0009416: response to light stimulus4.07E-02
98GO:0009555: pollen development4.07E-02
99GO:0009611: response to wounding4.14E-02
100GO:0035556: intracellular signal transduction4.23E-02
RankGO TermAdjusted P value
1GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
2GO:0004620: phospholipase activity3.78E-06
3GO:0019707: protein-cysteine S-acyltransferase activity2.19E-05
4GO:0000170: sphingosine hydroxylase activity2.19E-05
5GO:0003867: 4-aminobutyrate transaminase activity2.19E-05
6GO:0038199: ethylene receptor activity5.64E-05
7GO:0042284: sphingolipid delta-4 desaturase activity5.64E-05
8GO:0051740: ethylene binding1.49E-04
9GO:0001653: peptide receptor activity1.49E-04
10GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.62E-04
11GO:0015562: efflux transmembrane transporter activity3.24E-04
12GO:0031593: polyubiquitin binding3.24E-04
13GO:0052747: sinapyl alcohol dehydrogenase activity5.25E-04
14GO:0004630: phospholipase D activity5.98E-04
15GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.98E-04
16GO:0047617: acyl-CoA hydrolase activity7.48E-04
17GO:0030955: potassium ion binding7.48E-04
18GO:0004743: pyruvate kinase activity7.48E-04
19GO:0004673: protein histidine kinase activity8.27E-04
20GO:0045551: cinnamyl-alcohol dehydrogenase activity9.89E-04
21GO:0000155: phosphorelay sensor kinase activity1.07E-03
22GO:0005385: zinc ion transmembrane transporter activity1.43E-03
23GO:0043130: ubiquitin binding1.43E-03
24GO:0008324: cation transmembrane transporter activity1.53E-03
25GO:0019706: protein-cysteine S-palmitoyltransferase activity1.63E-03
26GO:0004672: protein kinase activity2.61E-03
27GO:0000156: phosphorelay response regulator activity2.85E-03
28GO:0005200: structural constituent of cytoskeleton3.09E-03
29GO:0009931: calcium-dependent protein serine/threonine kinase activity3.60E-03
30GO:0004683: calmodulin-dependent protein kinase activity3.73E-03
31GO:0005096: GTPase activator activity4.14E-03
32GO:0050897: cobalt ion binding4.42E-03
33GO:0035091: phosphatidylinositol binding5.91E-03
34GO:0005515: protein binding6.12E-03
35GO:0005524: ATP binding9.13E-03
36GO:0030170: pyridoxal phosphate binding1.11E-02
37GO:0015144: carbohydrate transmembrane transporter activity1.17E-02
38GO:0004674: protein serine/threonine kinase activity1.21E-02
39GO:0005351: sugar:proton symporter activity1.27E-02
40GO:0042802: identical protein binding1.53E-02
41GO:0000287: magnesium ion binding1.74E-02
42GO:0046982: protein heterodimerization activity1.74E-02
43GO:0061630: ubiquitin protein ligase activity2.13E-02
44GO:0004722: protein serine/threonine phosphatase activity2.49E-02
45GO:0016887: ATPase activity3.70E-02
RankGO TermAdjusted P value
1GO:0000138: Golgi trans cisterna2.19E-05
2GO:0071782: endoplasmic reticulum tubular network1.49E-04
3GO:0005776: autophagosome2.04E-04
4GO:0000813: ESCRT I complex2.62E-04
5GO:0005789: endoplasmic reticulum membrane4.36E-04
6GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.25E-04
7GO:0008540: proteasome regulatory particle, base subcomplex7.48E-04
8GO:0017119: Golgi transport complex8.27E-04
9GO:0005783: endoplasmic reticulum9.45E-04
10GO:0005794: Golgi apparatus1.27E-03
11GO:0005769: early endosome1.34E-03
12GO:0031410: cytoplasmic vesicle1.73E-03
13GO:0030136: clathrin-coated vesicle2.04E-03
14GO:0005829: cytosol4.28E-03
15GO:0000786: nucleosome4.56E-03
16GO:0031902: late endosome membrane5.30E-03
17GO:0005856: cytoskeleton6.07E-03
18GO:0031966: mitochondrial membrane6.55E-03
19GO:0000502: proteasome complex6.88E-03
20GO:0005886: plasma membrane8.88E-03
21GO:0005743: mitochondrial inner membrane2.57E-02
22GO:0016020: membrane3.20E-02
Gene type



Gene DE type