GO Enrichment Analysis of Co-expressed Genes with
AT3G29185
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045176: apical protein localization | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 4 | GO:0042493: response to drug | 0.00E+00 |
| 5 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 8 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 9 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 10 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 11 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 12 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 13 | GO:0006412: translation | 7.30E-13 |
| 14 | GO:0042254: ribosome biogenesis | 1.96E-11 |
| 15 | GO:0015979: photosynthesis | 4.08E-08 |
| 16 | GO:0032544: plastid translation | 4.60E-08 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 2.42E-07 |
| 18 | GO:0009658: chloroplast organization | 3.02E-05 |
| 19 | GO:0042372: phylloquinone biosynthetic process | 1.08E-04 |
| 20 | GO:0043489: RNA stabilization | 2.13E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.13E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 2.13E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 2.13E-04 |
| 24 | GO:0034337: RNA folding | 2.13E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.13E-04 |
| 26 | GO:0071482: cellular response to light stimulus | 2.25E-04 |
| 27 | GO:0010027: thylakoid membrane organization | 3.33E-04 |
| 28 | GO:0010024: phytochromobilin biosynthetic process | 4.76E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.76E-04 |
| 30 | GO:0034755: iron ion transmembrane transport | 4.76E-04 |
| 31 | GO:0006006: glucose metabolic process | 5.75E-04 |
| 32 | GO:0010207: photosystem II assembly | 6.47E-04 |
| 33 | GO:0006954: inflammatory response | 7.74E-04 |
| 34 | GO:0006518: peptide metabolic process | 7.74E-04 |
| 35 | GO:0006788: heme oxidation | 7.74E-04 |
| 36 | GO:0009800: cinnamic acid biosynthetic process | 1.10E-03 |
| 37 | GO:0009650: UV protection | 1.10E-03 |
| 38 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.10E-03 |
| 39 | GO:2001141: regulation of RNA biosynthetic process | 1.10E-03 |
| 40 | GO:0009152: purine ribonucleotide biosynthetic process | 1.10E-03 |
| 41 | GO:0046653: tetrahydrofolate metabolic process | 1.10E-03 |
| 42 | GO:0015994: chlorophyll metabolic process | 1.47E-03 |
| 43 | GO:0000413: protein peptidyl-prolyl isomerization | 1.61E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.87E-03 |
| 45 | GO:0031365: N-terminal protein amino acid modification | 1.87E-03 |
| 46 | GO:0010190: cytochrome b6f complex assembly | 2.31E-03 |
| 47 | GO:0006751: glutathione catabolic process | 2.31E-03 |
| 48 | GO:0048827: phyllome development | 2.31E-03 |
| 49 | GO:0042549: photosystem II stabilization | 2.31E-03 |
| 50 | GO:0006559: L-phenylalanine catabolic process | 2.31E-03 |
| 51 | GO:0032973: amino acid export | 2.31E-03 |
| 52 | GO:0017148: negative regulation of translation | 2.77E-03 |
| 53 | GO:0010019: chloroplast-nucleus signaling pathway | 2.77E-03 |
| 54 | GO:0009772: photosynthetic electron transport in photosystem II | 3.26E-03 |
| 55 | GO:0043090: amino acid import | 3.26E-03 |
| 56 | GO:0030091: protein repair | 3.78E-03 |
| 57 | GO:0006605: protein targeting | 3.78E-03 |
| 58 | GO:0032508: DNA duplex unwinding | 3.78E-03 |
| 59 | GO:0042255: ribosome assembly | 3.78E-03 |
| 60 | GO:0006353: DNA-templated transcription, termination | 3.78E-03 |
| 61 | GO:0018298: protein-chromophore linkage | 4.00E-03 |
| 62 | GO:0009631: cold acclimation | 4.62E-03 |
| 63 | GO:0080144: amino acid homeostasis | 4.90E-03 |
| 64 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.90E-03 |
| 65 | GO:0009637: response to blue light | 5.07E-03 |
| 66 | GO:0034599: cellular response to oxidative stress | 5.30E-03 |
| 67 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.50E-03 |
| 68 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.12E-03 |
| 69 | GO:0010114: response to red light | 6.53E-03 |
| 70 | GO:0019684: photosynthesis, light reaction | 6.77E-03 |
| 71 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.77E-03 |
| 72 | GO:0043085: positive regulation of catalytic activity | 6.77E-03 |
| 73 | GO:0006879: cellular iron ion homeostasis | 6.77E-03 |
| 74 | GO:0006352: DNA-templated transcription, initiation | 6.77E-03 |
| 75 | GO:0009735: response to cytokinin | 6.98E-03 |
| 76 | GO:0009416: response to light stimulus | 7.99E-03 |
| 77 | GO:0010628: positive regulation of gene expression | 8.13E-03 |
| 78 | GO:0010229: inflorescence development | 8.13E-03 |
| 79 | GO:0010540: basipetal auxin transport | 8.84E-03 |
| 80 | GO:0010143: cutin biosynthetic process | 8.84E-03 |
| 81 | GO:0019253: reductive pentose-phosphate cycle | 8.84E-03 |
| 82 | GO:0009793: embryo development ending in seed dormancy | 1.01E-02 |
| 83 | GO:0000027: ribosomal large subunit assembly | 1.11E-02 |
| 84 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.19E-02 |
| 85 | GO:0061077: chaperone-mediated protein folding | 1.27E-02 |
| 86 | GO:0006869: lipid transport | 1.28E-02 |
| 87 | GO:0006810: transport | 1.33E-02 |
| 88 | GO:0016226: iron-sulfur cluster assembly | 1.36E-02 |
| 89 | GO:0016042: lipid catabolic process | 1.43E-02 |
| 90 | GO:0009411: response to UV | 1.45E-02 |
| 91 | GO:0009306: protein secretion | 1.53E-02 |
| 92 | GO:0008033: tRNA processing | 1.72E-02 |
| 93 | GO:0042335: cuticle development | 1.72E-02 |
| 94 | GO:0006662: glycerol ether metabolic process | 1.81E-02 |
| 95 | GO:0009790: embryo development | 1.84E-02 |
| 96 | GO:0048825: cotyledon development | 2.00E-02 |
| 97 | GO:0000302: response to reactive oxygen species | 2.10E-02 |
| 98 | GO:0032502: developmental process | 2.20E-02 |
| 99 | GO:0009451: RNA modification | 2.23E-02 |
| 100 | GO:0071281: cellular response to iron ion | 2.31E-02 |
| 101 | GO:0009911: positive regulation of flower development | 2.73E-02 |
| 102 | GO:0015995: chlorophyll biosynthetic process | 3.07E-02 |
| 103 | GO:0016311: dephosphorylation | 3.18E-02 |
| 104 | GO:0009817: defense response to fungus, incompatible interaction | 3.30E-02 |
| 105 | GO:0010218: response to far red light | 3.54E-02 |
| 106 | GO:0006811: ion transport | 3.54E-02 |
| 107 | GO:0007568: aging | 3.66E-02 |
| 108 | GO:0045087: innate immune response | 3.91E-02 |
| 109 | GO:0009853: photorespiration | 3.91E-02 |
| 110 | GO:0006457: protein folding | 4.19E-02 |
| 111 | GO:0030001: metal ion transport | 4.29E-02 |
| 112 | GO:0006839: mitochondrial transport | 4.29E-02 |
| 113 | GO:0051707: response to other organism | 4.68E-02 |
| 114 | GO:0045454: cell redox homeostasis | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 6.31E-20 |
| 6 | GO:0003735: structural constituent of ribosome | 1.46E-13 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.68E-10 |
| 8 | GO:0005528: FK506 binding | 2.09E-08 |
| 9 | GO:0043023: ribosomal large subunit binding | 1.79E-05 |
| 10 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.13E-04 |
| 11 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.76E-04 |
| 12 | GO:0047746: chlorophyllase activity | 4.76E-04 |
| 13 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.76E-04 |
| 14 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.76E-04 |
| 15 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.76E-04 |
| 16 | GO:0008266: poly(U) RNA binding | 6.47E-04 |
| 17 | GO:0030267: glyoxylate reductase (NADP) activity | 7.74E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.74E-04 |
| 19 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.74E-04 |
| 20 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 7.74E-04 |
| 21 | GO:0050734: hydroxycinnamoyltransferase activity | 7.74E-04 |
| 22 | GO:0045548: phenylalanine ammonia-lyase activity | 7.74E-04 |
| 23 | GO:0008097: 5S rRNA binding | 1.10E-03 |
| 24 | GO:0001872: (1->3)-beta-D-glucan binding | 1.10E-03 |
| 25 | GO:0016788: hydrolase activity, acting on ester bonds | 1.37E-03 |
| 26 | GO:0004392: heme oxygenase (decyclizing) activity | 1.47E-03 |
| 27 | GO:0004659: prenyltransferase activity | 1.47E-03 |
| 28 | GO:0001053: plastid sigma factor activity | 1.47E-03 |
| 29 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.47E-03 |
| 30 | GO:0016987: sigma factor activity | 1.47E-03 |
| 31 | GO:0043495: protein anchor | 1.47E-03 |
| 32 | GO:0005509: calcium ion binding | 1.65E-03 |
| 33 | GO:0004040: amidase activity | 1.87E-03 |
| 34 | GO:0016208: AMP binding | 2.31E-03 |
| 35 | GO:0016688: L-ascorbate peroxidase activity | 2.31E-03 |
| 36 | GO:0004130: cytochrome-c peroxidase activity | 2.31E-03 |
| 37 | GO:0051753: mannan synthase activity | 2.77E-03 |
| 38 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.77E-03 |
| 39 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.77E-03 |
| 40 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.77E-03 |
| 41 | GO:0016168: chlorophyll binding | 3.25E-03 |
| 42 | GO:0019899: enzyme binding | 3.26E-03 |
| 43 | GO:0008235: metalloexopeptidase activity | 3.26E-03 |
| 44 | GO:0043022: ribosome binding | 3.78E-03 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 3.78E-03 |
| 46 | GO:0005381: iron ion transmembrane transporter activity | 5.50E-03 |
| 47 | GO:0008289: lipid binding | 5.52E-03 |
| 48 | GO:0050661: NADP binding | 5.77E-03 |
| 49 | GO:0008047: enzyme activator activity | 6.12E-03 |
| 50 | GO:0004177: aminopeptidase activity | 6.77E-03 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.06E-03 |
| 52 | GO:0052689: carboxylic ester hydrolase activity | 1.03E-02 |
| 53 | GO:0031409: pigment binding | 1.03E-02 |
| 54 | GO:0051536: iron-sulfur cluster binding | 1.11E-02 |
| 55 | GO:0004871: signal transducer activity | 1.21E-02 |
| 56 | GO:0046872: metal ion binding | 1.25E-02 |
| 57 | GO:0030570: pectate lyase activity | 1.45E-02 |
| 58 | GO:0022891: substrate-specific transmembrane transporter activity | 1.45E-02 |
| 59 | GO:0003727: single-stranded RNA binding | 1.53E-02 |
| 60 | GO:0047134: protein-disulfide reductase activity | 1.62E-02 |
| 61 | GO:0009055: electron carrier activity | 1.62E-02 |
| 62 | GO:0008080: N-acetyltransferase activity | 1.81E-02 |
| 63 | GO:0004791: thioredoxin-disulfide reductase activity | 1.91E-02 |
| 64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.31E-02 |
| 65 | GO:0004721: phosphoprotein phosphatase activity | 3.07E-02 |
| 66 | GO:0030247: polysaccharide binding | 3.07E-02 |
| 67 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.30E-02 |
| 68 | GO:0004222: metalloendopeptidase activity | 3.54E-02 |
| 69 | GO:0003993: acid phosphatase activity | 4.03E-02 |
| 70 | GO:0003723: RNA binding | 4.29E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.35E-48 |
| 3 | GO:0009570: chloroplast stroma | 1.76E-30 |
| 4 | GO:0009941: chloroplast envelope | 6.28E-22 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 5.06E-20 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.31E-20 |
| 7 | GO:0009579: thylakoid | 1.22E-19 |
| 8 | GO:0005840: ribosome | 2.92E-17 |
| 9 | GO:0031977: thylakoid lumen | 9.41E-16 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 2.80E-08 |
| 11 | GO:0019898: extrinsic component of membrane | 2.33E-07 |
| 12 | GO:0009534: chloroplast thylakoid | 3.03E-07 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.89E-06 |
| 14 | GO:0009547: plastid ribosome | 2.13E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.13E-04 |
| 16 | GO:0000311: plastid large ribosomal subunit | 5.07E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 6.47E-04 |
| 18 | GO:0042651: thylakoid membrane | 9.78E-04 |
| 19 | GO:0015934: large ribosomal subunit | 4.62E-03 |
| 20 | GO:0046658: anchored component of plasma membrane | 5.64E-03 |
| 21 | GO:0016020: membrane | 6.07E-03 |
| 22 | GO:0032040: small-subunit processome | 7.44E-03 |
| 23 | GO:0031969: chloroplast membrane | 9.04E-03 |
| 24 | GO:0030076: light-harvesting complex | 9.58E-03 |
| 25 | GO:0015935: small ribosomal subunit | 1.27E-02 |
| 26 | GO:0031225: anchored component of membrane | 1.56E-02 |
| 27 | GO:0005770: late endosome | 1.81E-02 |
| 28 | GO:0009522: photosystem I | 1.91E-02 |
| 29 | GO:0009523: photosystem II | 2.00E-02 |
| 30 | GO:0005778: peroxisomal membrane | 2.52E-02 |
| 31 | GO:0030529: intracellular ribonucleoprotein complex | 2.73E-02 |
| 32 | GO:0022626: cytosolic ribosome | 2.89E-02 |
| 33 | GO:0009536: plastid | 3.11E-02 |
| 34 | GO:0005819: spindle | 4.16E-02 |
| 35 | GO:0022625: cytosolic large ribosomal subunit | 4.38E-02 |