co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
2	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
3	GO:0035269: protein O-linked mannosylation	0.00E+00
4	GO:0010360: negative regulation of anion channel activity	0.00E+00
5	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
6	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
7	GO:0032780: negative regulation of ATPase activity	0.00E+00
8	GO:0006542: glutamine biosynthetic process	7.19E-06
9	GO:0006014: D-ribose metabolic process	1.83E-05
10	GO:0016559: peroxisome fission	4.65E-05
11	GO:1902361: mitochondrial pyruvate transmembrane transport	8.78E-05
12	GO:0051775: response to redox state	8.78E-05
13	GO:0032469: endoplasmic reticulum calcium ion homeostasis	8.78E-05
14	GO:0046167: glycerol-3-phosphate biosynthetic process	8.78E-05
15	GO:0000266: mitochondrial fission	1.46E-04
16	GO:0006641: triglyceride metabolic process	2.08E-04
17	GO:0006212: uracil catabolic process	2.08E-04
18	GO:0007584: response to nutrient	2.08E-04
19	GO:0052542: defense response by callose deposition	2.08E-04
20	GO:0019483: beta-alanine biosynthetic process	2.08E-04
21	GO:0006850: mitochondrial pyruvate transport	2.08E-04
22	GO:0007154: cell communication	2.08E-04
23	GO:0019441: tryptophan catabolic process to kynurenine	2.08E-04
24	GO:0019563: glycerol catabolic process	3.48E-04
25	GO:0010359: regulation of anion channel activity	3.48E-04
26	GO:0045454: cell redox homeostasis	3.75E-04
27	GO:0006072: glycerol-3-phosphate metabolic process	5.01E-04
28	GO:0009399: nitrogen fixation	5.01E-04
29	GO:0019252: starch biosynthetic process	6.17E-04
30	GO:0010107: potassium ion import	6.66E-04
31	GO:0010188: response to microbial phytotoxin	6.66E-04
32	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	8.44E-04
33	GO:0007029: endoplasmic reticulum organization	8.44E-04
34	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.03E-03
35	GO:1902456: regulation of stomatal opening	1.03E-03
36	GO:1900425: negative regulation of defense response to bacterium	1.03E-03
37	GO:0010337: regulation of salicylic acid metabolic process	1.03E-03
38	GO:0016070: RNA metabolic process	1.03E-03
39	GO:0042128: nitrate assimilation	1.04E-03
40	GO:0048280: vesicle fusion with Golgi apparatus	1.23E-03
41	GO:0006955: immune response	1.44E-03
42	GO:0046470: phosphatidylcholine metabolic process	1.44E-03
43	GO:0006506: GPI anchor biosynthetic process	1.66E-03
44	GO:2000070: regulation of response to water deprivation	1.66E-03
45	GO:0043562: cellular response to nitrogen levels	1.89E-03
46	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.14E-03
47	GO:0090333: regulation of stomatal closure	2.14E-03
48	GO:0006896: Golgi to vacuole transport	2.65E-03
49	GO:0006995: cellular response to nitrogen starvation	2.65E-03
50	GO:0006535: cysteine biosynthetic process from serine	2.65E-03
51	GO:0043069: negative regulation of programmed cell death	2.65E-03
52	GO:0043085: positive regulation of catalytic activity	2.93E-03
53	GO:0030148: sphingolipid biosynthetic process	2.93E-03
54	GO:0071365: cellular response to auxin stimulus	3.21E-03
55	GO:0006094: gluconeogenesis	3.50E-03
56	GO:0006979: response to oxidative stress	3.63E-03
57	GO:0002237: response to molecule of bacterial origin	3.80E-03
58	GO:0009225: nucleotide-sugar metabolic process	4.10E-03
59	GO:0019344: cysteine biosynthetic process	4.74E-03
60	GO:0007005: mitochondrion organization	5.76E-03
61	GO:0006633: fatty acid biosynthetic process	5.78E-03
62	GO:0006012: galactose metabolic process	6.12E-03
63	GO:0010150: leaf senescence	6.35E-03
64	GO:0042147: retrograde transport, endosome to Golgi	6.86E-03
65	GO:0035556: intracellular signal transduction	6.90E-03
66	GO:0010118: stomatal movement	7.24E-03
67	GO:0009617: response to bacterium	7.58E-03
68	GO:0010154: fruit development	7.62E-03
69	GO:0006662: glycerol ether metabolic process	7.62E-03
70	GO:0048544: recognition of pollen	8.02E-03
71	GO:0006623: protein targeting to vacuole	8.42E-03
72	GO:0071554: cell wall organization or biogenesis	8.83E-03
73	GO:0002229: defense response to oomycetes	8.83E-03
74	GO:0010193: response to ozone	8.83E-03
75	GO:0000302: response to reactive oxygen species	8.83E-03
76	GO:0006891: intra-Golgi vesicle-mediated transport	8.83E-03
77	GO:0006635: fatty acid beta-oxidation	8.83E-03
78	GO:0010583: response to cyclopentenone	9.24E-03
79	GO:0009630: gravitropism	9.24E-03
80	GO:0006468: protein phosphorylation	9.33E-03
81	GO:0006464: cellular protein modification process	1.01E-02
82	GO:0006888: ER to Golgi vesicle-mediated transport	1.28E-02
83	GO:0006950: response to stress	1.28E-02
84	GO:0046777: protein autophosphorylation	1.31E-02
85	GO:0008219: cell death	1.38E-02
86	GO:0016310: phosphorylation	1.39E-02
87	GO:0009631: cold acclimation	1.53E-02
88	GO:0009414: response to water deprivation	1.53E-02
89	GO:0010119: regulation of stomatal movement	1.53E-02
90	GO:0010043: response to zinc ion	1.53E-02
91	GO:0045087: innate immune response	1.63E-02
92	GO:0016051: carbohydrate biosynthetic process	1.63E-02
93	GO:0034599: cellular response to oxidative stress	1.68E-02
94	GO:0006631: fatty acid metabolic process	1.84E-02
95	GO:0042542: response to hydrogen peroxide	1.90E-02
96	GO:0009744: response to sucrose	1.95E-02
97	GO:0009651: response to salt stress	2.22E-02
98	GO:0031347: regulation of defense response	2.24E-02
99	GO:0042538: hyperosmotic salinity response	2.29E-02
100	GO:0006486: protein glycosylation	2.41E-02
101	GO:0005975: carbohydrate metabolic process	2.67E-02
102	GO:0006096: glycolytic process	2.72E-02
103	GO:0046686: response to cadmium ion	2.75E-02
104	GO:0048316: seed development	2.78E-02
105	GO:0009626: plant-type hypersensitive response	2.84E-02
106	GO:0018105: peptidyl-serine phosphorylation	3.17E-02

Rank	GO Term	Adjusted P value
1	GO:0019211: phosphatase activator activity	0.00E+00
2	GO:0004370: glycerol kinase activity	0.00E+00
3	GO:0004157: dihydropyrimidinase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
6	GO:0015370: solute:sodium symporter activity	0.00E+00
7	GO:0004356: glutamate-ammonia ligase activity	1.20E-05
8	GO:0004747: ribokinase activity	2.61E-05
9	GO:0008865: fructokinase activity	4.65E-05
10	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	8.78E-05
11	GO:0004142: diacylglycerol cholinephosphotransferase activity	2.08E-04
12	GO:0045140: inositol phosphoceramide synthase activity	2.08E-04
13	GO:0004061: arylformamidase activity	2.08E-04
14	GO:0019200: carbohydrate kinase activity	2.08E-04
15	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	2.08E-04
16	GO:0050833: pyruvate transmembrane transporter activity	3.48E-04
17	GO:0004383: guanylate cyclase activity	3.48E-04
18	GO:0008430: selenium binding	3.48E-04
19	GO:0015035: protein disulfide oxidoreductase activity	4.43E-04
20	GO:0001653: peptide receptor activity	5.01E-04
21	GO:0004416: hydroxyacylglutathione hydrolase activity	5.01E-04
22	GO:0000339: RNA cap binding	5.01E-04
23	GO:0004300: enoyl-CoA hydratase activity	5.01E-04
24	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	5.01E-04
25	GO:0050378: UDP-glucuronate 4-epimerase activity	6.66E-04
26	GO:0015204: urea transmembrane transporter activity	6.66E-04
27	GO:0016301: kinase activity	7.77E-04
28	GO:0005496: steroid binding	8.44E-04
29	GO:0005524: ATP binding	1.19E-03
30	GO:0102391: decanoate--CoA ligase activity	1.23E-03
31	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.23E-03
32	GO:0004124: cysteine synthase activity	1.23E-03
33	GO:0051920: peroxiredoxin activity	1.23E-03
34	GO:0004467: long-chain fatty acid-CoA ligase activity	1.44E-03
35	GO:0004034: aldose 1-epimerase activity	1.66E-03
36	GO:0016209: antioxidant activity	1.66E-03
37	GO:0005267: potassium channel activity	1.89E-03
38	GO:0005507: copper ion binding	2.10E-03
39	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.14E-03
40	GO:0045309: protein phosphorylated amino acid binding	2.39E-03
41	GO:0008794: arsenate reductase (glutaredoxin) activity	2.93E-03
42	GO:0019904: protein domain specific binding	2.93E-03
43	GO:0009055: electron carrier activity	3.40E-03
44	GO:0005262: calcium channel activity	3.50E-03
45	GO:0004674: protein serine/threonine kinase activity	3.86E-03
46	GO:0008408: 3'-5' exonuclease activity	5.42E-03
47	GO:0008565: protein transporter activity	5.51E-03
48	GO:0047134: protein-disulfide reductase activity	6.86E-03
49	GO:0050662: coenzyme binding	8.02E-03
50	GO:0004791: thioredoxin-disulfide reductase activity	8.02E-03
51	GO:0016853: isomerase activity	8.02E-03
52	GO:0004872: receptor activity	8.42E-03
53	GO:0030246: carbohydrate binding	9.38E-03
54	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.67E-03
55	GO:0016413: O-acetyltransferase activity	1.10E-02
56	GO:0008233: peptidase activity	1.20E-02
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.24E-02
58	GO:0004683: calmodulin-dependent protein kinase activity	1.28E-02
59	GO:0008236: serine-type peptidase activity	1.33E-02
60	GO:0000149: SNARE binding	1.74E-02
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.74E-02
62	GO:0003824: catalytic activity	1.77E-02
63	GO:0050661: NADP binding	1.79E-02
64	GO:0005484: SNAP receptor activity	1.95E-02
65	GO:0051537: 2 iron, 2 sulfur cluster binding	2.06E-02
66	GO:0015293: symporter activity	2.12E-02
67	GO:0051287: NAD binding	2.24E-02
68	GO:0004672: protein kinase activity	2.56E-02
69	GO:0005515: protein binding	2.98E-02
70	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.71E-02
71	GO:0004252: serine-type endopeptidase activity	3.92E-02
72	GO:0030170: pyridoxal phosphate binding	3.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005778: peroxisomal membrane	4.90E-05
2	GO:0005886: plasma membrane	6.00E-05
3	GO:0016021: integral component of membrane	1.57E-04
4	GO:0033185: dolichol-phosphate-mannose synthase complex	2.08E-04
5	GO:0005783: endoplasmic reticulum	2.12E-04
6	GO:0005741: mitochondrial outer membrane	3.29E-04
7	GO:0005794: Golgi apparatus	9.30E-04
8	GO:0030140: trans-Golgi network transport vesicle	1.03E-03
9	GO:0005777: peroxisome	1.51E-03
10	GO:0005789: endoplasmic reticulum membrane	1.64E-03
11	GO:0031305: integral component of mitochondrial inner membrane	1.66E-03
12	GO:0012507: ER to Golgi transport vesicle membrane	1.66E-03
13	GO:0031902: late endosome membrane	1.79E-03
14	GO:0000502: proteasome complex	2.61E-03
15	GO:0005740: mitochondrial envelope	2.65E-03
16	GO:0090404: pollen tube tip	2.93E-03
17	GO:0030176: integral component of endoplasmic reticulum membrane	4.10E-03
18	GO:0005739: mitochondrion	5.91E-03
19	GO:0005770: late endosome	7.62E-03
20	GO:0032580: Golgi cisterna membrane	1.01E-02
21	GO:0000932: P-body	1.14E-02
22	GO:0005802: trans-Golgi network	1.17E-02
23	GO:0000325: plant-type vacuole	1.53E-02
24	GO:0031201: SNARE complex	1.84E-02
25	GO:0009536: plastid	2.04E-02
26	GO:0005829: cytosol	2.28E-02
27	GO:0005774: vacuolar membrane	2.33E-02
28	GO:0005635: nuclear envelope	2.53E-02
29	GO:0012505: endomembrane system	3.04E-02
30	GO:0005737: cytoplasm	3.05E-02
31	GO:0022626: cytosolic ribosome	3.07E-02
32	GO:0005732: small nucleolar ribonucleoprotein complex	3.30E-02
33	GO:0005759: mitochondrial matrix	4.28E-02