Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072722: response to amitrole0.00E+00
2GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
3GO:0010055: atrichoblast differentiation0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0010421: hydrogen peroxide-mediated programmed cell death0.00E+00
6GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
7GO:0080053: response to phenylalanine0.00E+00
8GO:0080052: response to histidine0.00E+00
9GO:0046680: response to DDT0.00E+00
10GO:0046865: terpenoid transport0.00E+00
11GO:0006793: phosphorus metabolic process0.00E+00
12GO:0033587: shikimate biosynthetic process0.00E+00
13GO:0051238: sequestering of metal ion0.00E+00
14GO:0006032: chitin catabolic process1.49E-10
15GO:0000272: polysaccharide catabolic process2.37E-08
16GO:0016998: cell wall macromolecule catabolic process3.59E-07
17GO:0071456: cellular response to hypoxia4.66E-07
18GO:0009636: response to toxic substance4.29E-06
19GO:0042742: defense response to bacterium1.86E-05
20GO:0010204: defense response signaling pathway, resistance gene-independent2.01E-05
21GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway2.24E-05
22GO:0006468: protein phosphorylation7.72E-05
23GO:0009617: response to bacterium1.29E-04
24GO:0070588: calcium ion transmembrane transport1.31E-04
25GO:0009407: toxin catabolic process2.06E-04
26GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.63E-04
27GO:1900057: positive regulation of leaf senescence3.40E-04
28GO:0032107: regulation of response to nutrient levels3.78E-04
29GO:1903648: positive regulation of chlorophyll catabolic process3.78E-04
30GO:0060627: regulation of vesicle-mediated transport3.78E-04
31GO:0015760: glucose-6-phosphate transport3.78E-04
32GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.78E-04
33GO:0010726: positive regulation of hydrogen peroxide metabolic process3.78E-04
34GO:0000032: cell wall mannoprotein biosynthetic process3.78E-04
35GO:0032491: detection of molecule of fungal origin3.78E-04
36GO:0051707: response to other organism3.94E-04
37GO:0030091: protein repair4.26E-04
38GO:0002229: defense response to oomycetes6.03E-04
39GO:0051592: response to calcium ion8.22E-04
40GO:0031648: protein destabilization8.22E-04
41GO:0009805: coumarin biosynthetic process8.22E-04
42GO:0048569: post-embryonic animal organ development8.22E-04
43GO:0090057: root radial pattern formation8.22E-04
44GO:0009866: induced systemic resistance, ethylene mediated signaling pathway8.22E-04
45GO:0002240: response to molecule of oomycetes origin8.22E-04
46GO:0044419: interspecies interaction between organisms8.22E-04
47GO:0043066: negative regulation of apoptotic process8.22E-04
48GO:0042939: tripeptide transport8.22E-04
49GO:0015712: hexose phosphate transport8.22E-04
50GO:0009626: plant-type hypersensitive response8.92E-04
51GO:0009627: systemic acquired resistance1.10E-03
52GO:0010351: lithium ion transport1.33E-03
53GO:0010476: gibberellin mediated signaling pathway1.33E-03
54GO:0010325: raffinose family oligosaccharide biosynthetic process1.33E-03
55GO:0010272: response to silver ion1.33E-03
56GO:0015692: lead ion transport1.33E-03
57GO:0033591: response to L-ascorbic acid1.33E-03
58GO:0048281: inflorescence morphogenesis1.33E-03
59GO:0015714: phosphoenolpyruvate transport1.33E-03
60GO:0080168: abscisic acid transport1.33E-03
61GO:0071367: cellular response to brassinosteroid stimulus1.33E-03
62GO:0034051: negative regulation of plant-type hypersensitive response1.33E-03
63GO:0035436: triose phosphate transmembrane transport1.33E-03
64GO:0009817: defense response to fungus, incompatible interaction1.34E-03
65GO:0002237: response to molecule of bacterial origin1.44E-03
66GO:0006882: cellular zinc ion homeostasis1.92E-03
67GO:0046836: glycolipid transport1.92E-03
68GO:0045017: glycerolipid biosynthetic process1.92E-03
69GO:0010116: positive regulation of abscisic acid biosynthetic process1.92E-03
70GO:0009298: GDP-mannose biosynthetic process1.92E-03
71GO:0070301: cellular response to hydrogen peroxide1.92E-03
72GO:0010104: regulation of ethylene-activated signaling pathway1.92E-03
73GO:0006874: cellular calcium ion homeostasis2.20E-03
74GO:0040008: regulation of growth2.29E-03
75GO:0042542: response to hydrogen peroxide2.37E-03
76GO:0010109: regulation of photosynthesis2.58E-03
77GO:0045227: capsule polysaccharide biosynthetic process2.58E-03
78GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.58E-03
79GO:0006536: glutamate metabolic process2.58E-03
80GO:0033358: UDP-L-arabinose biosynthetic process2.58E-03
81GO:1901002: positive regulation of response to salt stress2.58E-03
82GO:0015713: phosphoglycerate transport2.58E-03
83GO:0042938: dipeptide transport2.58E-03
84GO:0006012: galactose metabolic process2.89E-03
85GO:0055114: oxidation-reduction process3.01E-03
86GO:0007166: cell surface receptor signaling pathway3.02E-03
87GO:0006855: drug transmembrane transport3.04E-03
88GO:0009751: response to salicylic acid3.11E-03
89GO:0010225: response to UV-C3.30E-03
90GO:0000304: response to singlet oxygen3.30E-03
91GO:0034052: positive regulation of plant-type hypersensitive response3.30E-03
92GO:0045487: gibberellin catabolic process3.30E-03
93GO:0010942: positive regulation of cell death4.08E-03
94GO:0015691: cadmium ion transport4.08E-03
95GO:0010256: endomembrane system organization4.08E-03
96GO:0060918: auxin transport4.08E-03
97GO:0002238: response to molecule of fungal origin4.08E-03
98GO:0009643: photosynthetic acclimation4.08E-03
99GO:0050665: hydrogen peroxide biosynthetic process4.08E-03
100GO:0010193: response to ozone4.89E-03
101GO:0009854: oxidative photosynthetic carbon pathway4.92E-03
102GO:0048444: floral organ morphogenesis4.92E-03
103GO:0045926: negative regulation of growth4.92E-03
104GO:0009620: response to fungus5.10E-03
105GO:1902074: response to salt5.81E-03
106GO:0009395: phospholipid catabolic process5.81E-03
107GO:0030026: cellular manganese ion homeostasis5.81E-03
108GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.81E-03
109GO:0050829: defense response to Gram-negative bacterium5.81E-03
110GO:0051607: defense response to virus6.69E-03
111GO:0009737: response to abscisic acid6.69E-03
112GO:0009642: response to light intensity6.75E-03
113GO:0019375: galactolipid biosynthetic process6.75E-03
114GO:2000070: regulation of response to water deprivation6.75E-03
115GO:0010200: response to chitin7.01E-03
116GO:0009615: response to virus7.09E-03
117GO:0009808: lignin metabolic process7.75E-03
118GO:0009699: phenylpropanoid biosynthetic process7.75E-03
119GO:0001558: regulation of cell growth7.75E-03
120GO:0010262: somatic embryogenesis7.75E-03
121GO:0010120: camalexin biosynthetic process7.75E-03
122GO:0009056: catabolic process8.79E-03
123GO:0006098: pentose-phosphate shunt8.79E-03
124GO:0010112: regulation of systemic acquired resistance8.79E-03
125GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.89E-03
126GO:0006979: response to oxidative stress1.04E-02
127GO:0007568: aging1.07E-02
128GO:0009688: abscisic acid biosynthetic process1.10E-02
129GO:0010162: seed dormancy process1.10E-02
130GO:0055062: phosphate ion homeostasis1.10E-02
131GO:0007064: mitotic sister chromatid cohesion1.10E-02
132GO:0006995: cellular response to nitrogen starvation1.10E-02
133GO:0009870: defense response signaling pathway, resistance gene-dependent1.10E-02
134GO:0032259: methylation1.13E-02
135GO:0010150: leaf senescence1.15E-02
136GO:0009682: induced systemic resistance1.22E-02
137GO:0009089: lysine biosynthetic process via diaminopimelate1.22E-02
138GO:0006952: defense response1.23E-02
139GO:0055085: transmembrane transport1.32E-02
140GO:0009753: response to jasmonic acid1.34E-02
141GO:0012501: programmed cell death1.34E-02
142GO:0006820: anion transport1.34E-02
143GO:0002213: defense response to insect1.34E-02
144GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-02
145GO:0050832: defense response to fungus1.44E-02
146GO:0055046: microgametogenesis1.47E-02
147GO:0009744: response to sucrose1.52E-02
148GO:0010143: cutin biosynthetic process1.60E-02
149GO:0009225: nucleotide-sugar metabolic process1.74E-02
150GO:0042343: indole glucosinolate metabolic process1.74E-02
151GO:0019853: L-ascorbic acid biosynthetic process1.74E-02
152GO:0031347: regulation of defense response1.85E-02
153GO:0009846: pollen germination1.91E-02
154GO:0006812: cation transport1.91E-02
155GO:0009809: lignin biosynthetic process2.05E-02
156GO:0051302: regulation of cell division2.17E-02
157GO:0098542: defense response to other organism2.32E-02
158GO:0010431: seed maturation2.32E-02
159GO:0046686: response to cadmium ion2.39E-02
160GO:0031348: negative regulation of defense response2.48E-02
161GO:0019748: secondary metabolic process2.48E-02
162GO:0080167: response to karrikin2.63E-02
163GO:0071369: cellular response to ethylene stimulus2.64E-02
164GO:0010227: floral organ abscission2.64E-02
165GO:0071215: cellular response to abscisic acid stimulus2.64E-02
166GO:0009686: gibberellin biosynthetic process2.64E-02
167GO:0010584: pollen exine formation2.80E-02
168GO:0006817: phosphate ion transport2.80E-02
169GO:0009561: megagametogenesis2.80E-02
170GO:0009624: response to nematode2.93E-02
171GO:0042631: cellular response to water deprivation3.13E-02
172GO:0042391: regulation of membrane potential3.13E-02
173GO:0009958: positive gravitropism3.30E-02
174GO:0006885: regulation of pH3.30E-02
175GO:0010154: fruit development3.30E-02
176GO:0006814: sodium ion transport3.48E-02
177GO:0009646: response to absence of light3.48E-02
178GO:0048544: recognition of pollen3.48E-02
179GO:0006623: protein targeting to vacuole3.66E-02
180GO:0009749: response to glucose3.66E-02
181GO:0009845: seed germination3.96E-02
182GO:0007165: signal transduction4.07E-02
183GO:0042744: hydrogen peroxide catabolic process4.16E-02
184GO:1901657: glycosyl compound metabolic process4.21E-02
185GO:0030163: protein catabolic process4.21E-02
186GO:0010252: auxin homeostasis4.40E-02
187GO:0009639: response to red or far red light4.40E-02
188GO:0016036: cellular response to phosphate starvation4.69E-02
RankGO TermAdjusted P value
1GO:0035885: exochitinase activity0.00E+00
2GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0008843: endochitinase activity0.00E+00
5GO:0003796: lysozyme activity0.00E+00
6GO:0004568: chitinase activity1.50E-08
7GO:0008061: chitin binding1.09E-07
8GO:0005388: calcium-transporting ATPase activity9.17E-05
9GO:0016301: kinase activity2.08E-04
10GO:0004674: protein serine/threonine kinase activity2.51E-04
11GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.63E-04
12GO:0003978: UDP-glucose 4-epimerase activity2.63E-04
13GO:0004364: glutathione transferase activity3.69E-04
14GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.78E-04
15GO:0004476: mannose-6-phosphate isomerase activity3.78E-04
16GO:0010285: L,L-diaminopimelate aminotransferase activity3.78E-04
17GO:0005524: ATP binding5.08E-04
18GO:0005516: calmodulin binding5.43E-04
19GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.81E-04
20GO:0010331: gibberellin binding8.22E-04
21GO:0045543: gibberellin 2-beta-dioxygenase activity8.22E-04
22GO:0015152: glucose-6-phosphate transmembrane transporter activity8.22E-04
23GO:0050736: O-malonyltransferase activity8.22E-04
24GO:0015036: disulfide oxidoreductase activity8.22E-04
25GO:0042937: tripeptide transporter activity8.22E-04
26GO:0008171: O-methyltransferase activity8.60E-04
27GO:0008559: xenobiotic-transporting ATPase activity9.90E-04
28GO:0071917: triose-phosphate transmembrane transporter activity1.33E-03
29GO:0000975: regulatory region DNA binding1.33E-03
30GO:0030246: carbohydrate binding1.40E-03
31GO:0030145: manganese ion binding1.61E-03
32GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.61E-03
33GO:0004351: glutamate decarboxylase activity1.92E-03
34GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.92E-03
35GO:0017089: glycolipid transporter activity1.92E-03
36GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.92E-03
37GO:0008276: protein methyltransferase activity1.92E-03
38GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.92E-03
39GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.92E-03
40GO:0015120: phosphoglycerate transmembrane transporter activity2.58E-03
41GO:0015368: calcium:cation antiporter activity2.58E-03
42GO:0050373: UDP-arabinose 4-epimerase activity2.58E-03
43GO:0004737: pyruvate decarboxylase activity2.58E-03
44GO:0042936: dipeptide transporter activity2.58E-03
45GO:0051861: glycolipid binding2.58E-03
46GO:0015369: calcium:proton antiporter activity2.58E-03
47GO:0010279: indole-3-acetic acid amido synthetase activity2.58E-03
48GO:0009916: alternative oxidase activity2.58E-03
49GO:0008891: glycolate oxidase activity2.58E-03
50GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.30E-03
51GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.08E-03
52GO:0030976: thiamine pyrophosphate binding4.08E-03
53GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.08E-03
54GO:0043565: sequence-specific DNA binding4.29E-03
55GO:0045735: nutrient reservoir activity4.52E-03
56GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.92E-03
57GO:0004144: diacylglycerol O-acyltransferase activity4.92E-03
58GO:0016831: carboxy-lyase activity5.81E-03
59GO:0102425: myricetin 3-O-glucosyltransferase activity5.81E-03
60GO:0102360: daphnetin 3-O-glucosyltransferase activity5.81E-03
61GO:0050660: flavin adenine dinucleotide binding5.99E-03
62GO:0008483: transaminase activity6.31E-03
63GO:0015288: porin activity6.75E-03
64GO:0047893: flavonol 3-O-glucosyltransferase activity6.75E-03
65GO:0004033: aldo-keto reductase (NADP) activity6.75E-03
66GO:0015491: cation:cation antiporter activity6.75E-03
67GO:0051213: dioxygenase activity7.09E-03
68GO:0004630: phospholipase D activity7.75E-03
69GO:0008308: voltage-gated anion channel activity7.75E-03
70GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity7.75E-03
71GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.80E-03
72GO:0015238: drug transmembrane transporter activity9.74E-03
73GO:0015297: antiporter activity1.09E-02
74GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.18E-02
75GO:0003680: AT DNA binding1.22E-02
76GO:0008422: beta-glucosidase activity1.29E-02
77GO:0009055: electron carrier activity1.34E-02
78GO:0005262: calcium channel activity1.47E-02
79GO:0004022: alcohol dehydrogenase (NAD) activity1.47E-02
80GO:0005315: inorganic phosphate transmembrane transporter activity1.47E-02
81GO:0004175: endopeptidase activity1.60E-02
82GO:0004190: aspartic-type endopeptidase activity1.74E-02
83GO:0030552: cAMP binding1.74E-02
84GO:0030553: cGMP binding1.74E-02
85GO:0004970: ionotropic glutamate receptor activity1.74E-02
86GO:0005217: intracellular ligand-gated ion channel activity1.74E-02
87GO:0008168: methyltransferase activity1.91E-02
88GO:0008134: transcription factor binding2.02E-02
89GO:0001046: core promoter sequence-specific DNA binding2.02E-02
90GO:0005216: ion channel activity2.17E-02
91GO:0035251: UDP-glucosyltransferase activity2.32E-02
92GO:0004499: N,N-dimethylaniline monooxygenase activity2.80E-02
93GO:0005451: monovalent cation:proton antiporter activity3.13E-02
94GO:0005249: voltage-gated potassium channel activity3.13E-02
95GO:0030551: cyclic nucleotide binding3.13E-02
96GO:0005199: structural constituent of cell wall3.30E-02
97GO:0015299: solute:proton antiporter activity3.48E-02
98GO:0010181: FMN binding3.48E-02
99GO:0046872: metal ion binding3.51E-02
100GO:0019901: protein kinase binding3.66E-02
101GO:0004197: cysteine-type endopeptidase activity4.02E-02
102GO:0030170: pyridoxal phosphate binding4.06E-02
103GO:0015385: sodium:proton antiporter activity4.21E-02
104GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.24E-02
105GO:0016791: phosphatase activity4.40E-02
106GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.69E-02
107GO:0004842: ubiquitin-protein transferase activity4.95E-02
RankGO TermAdjusted P value
1GO:0098687: chromosomal region0.00E+00
2GO:0005886: plasma membrane8.48E-05
3GO:0016021: integral component of membrane1.09E-04
4GO:0031314: extrinsic component of mitochondrial inner membrane8.22E-04
5GO:0009530: primary cell wall1.33E-03
6GO:0000325: plant-type vacuole1.61E-03
7GO:0005576: extracellular region2.76E-03
8GO:0005770: late endosome3.96E-03
9GO:0031225: anchored component of membrane6.15E-03
10GO:0046930: pore complex7.75E-03
11GO:0005887: integral component of plasma membrane1.91E-02
12GO:0031966: mitochondrial membrane1.91E-02
13GO:0070469: respiratory chain2.17E-02
14GO:0048046: apoplast2.28E-02
15GO:0005741: mitochondrial outer membrane2.32E-02
16GO:0005829: cytosol2.41E-02
17GO:0005618: cell wall2.75E-02
18GO:0071944: cell periphery4.21E-02
19GO:0032580: Golgi cisterna membrane4.40E-02
20GO:0043231: intracellular membrane-bounded organelle4.79E-02
Gene type



Gene DE type