co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	2.18E-05
5	GO:0080170: hydrogen peroxide transmembrane transport	2.27E-05
6	GO:0016042: lipid catabolic process	2.93E-05
7	GO:0042335: cuticle development	1.75E-04
8	GO:0034220: ion transmembrane transport	1.75E-04
9	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.43E-04
10	GO:0071588: hydrogen peroxide mediated signaling pathway	2.43E-04
11	GO:0033481: galacturonate biosynthetic process	2.43E-04
12	GO:0015995: chlorophyll biosynthetic process	5.26E-04
13	GO:0010024: phytochromobilin biosynthetic process	5.39E-04
14	GO:0006898: receptor-mediated endocytosis	5.39E-04
15	GO:0043255: regulation of carbohydrate biosynthetic process	5.39E-04
16	GO:0010115: regulation of abscisic acid biosynthetic process	5.39E-04
17	GO:0001736: establishment of planar polarity	5.39E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.45E-04
19	GO:0009735: response to cytokinin	5.89E-04
20	GO:0015979: photosynthesis	6.49E-04
21	GO:0009416: response to light stimulus	7.04E-04
22	GO:0010143: cutin biosynthetic process	7.77E-04
23	GO:0010167: response to nitrate	8.68E-04
24	GO:0006788: heme oxidation	8.75E-04
25	GO:0015714: phosphoenolpyruvate transport	8.75E-04
26	GO:0090391: granum assembly	8.75E-04
27	GO:0016045: detection of bacterium	8.75E-04
28	GO:0010359: regulation of anion channel activity	8.75E-04
29	GO:0006833: water transport	9.63E-04
30	GO:0051639: actin filament network formation	1.25E-03
31	GO:0009152: purine ribonucleotide biosynthetic process	1.25E-03
32	GO:0046653: tetrahydrofolate metabolic process	1.25E-03
33	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.25E-03
34	GO:0009800: cinnamic acid biosynthetic process	1.25E-03
35	GO:0009650: UV protection	1.25E-03
36	GO:1901332: negative regulation of lateral root development	1.25E-03
37	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.53E-03
38	GO:0051764: actin crosslink formation	1.67E-03
39	GO:0045727: positive regulation of translation	1.67E-03
40	GO:0030104: water homeostasis	1.67E-03
41	GO:0015713: phosphoglycerate transport	1.67E-03
42	GO:0006564: L-serine biosynthetic process	2.13E-03
43	GO:0006559: L-phenylalanine catabolic process	2.62E-03
44	GO:0009913: epidermal cell differentiation	2.62E-03
45	GO:0010337: regulation of salicylic acid metabolic process	2.62E-03
46	GO:0006561: proline biosynthetic process	2.62E-03
47	GO:0006751: glutathione catabolic process	2.62E-03
48	GO:0042549: photosystem II stabilization	2.62E-03
49	GO:0009828: plant-type cell wall loosening	3.11E-03
50	GO:0010019: chloroplast-nucleus signaling pathway	3.15E-03
51	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.15E-03
52	GO:0010027: thylakoid membrane organization	3.71E-03
53	GO:0009772: photosynthetic electron transport in photosystem II	3.72E-03
54	GO:1900056: negative regulation of leaf senescence	3.72E-03
55	GO:0010196: nonphotochemical quenching	3.72E-03
56	GO:0050829: defense response to Gram-negative bacterium	3.72E-03
57	GO:1900057: positive regulation of leaf senescence	3.72E-03
58	GO:0010444: guard mother cell differentiation	3.72E-03
59	GO:0006869: lipid transport	3.74E-03
60	GO:0008610: lipid biosynthetic process	4.31E-03
61	GO:0006605: protein targeting	4.31E-03
62	GO:0031540: regulation of anthocyanin biosynthetic process	4.31E-03
63	GO:0055075: potassium ion homeostasis	4.31E-03
64	GO:0032544: plastid translation	4.93E-03
65	GO:0007623: circadian rhythm	5.03E-03
66	GO:0010311: lateral root formation	5.08E-03
67	GO:0009051: pentose-phosphate shunt, oxidative branch	5.59E-03
68	GO:0034765: regulation of ion transmembrane transport	5.59E-03
69	GO:0010205: photoinhibition	6.27E-03
70	GO:0009638: phototropism	6.27E-03
71	GO:0006032: chitin catabolic process	6.99E-03
72	GO:0009688: abscisic acid biosynthetic process	6.99E-03
73	GO:0048829: root cap development	6.99E-03
74	GO:0046856: phosphatidylinositol dephosphorylation	7.73E-03
75	GO:0000038: very long-chain fatty acid metabolic process	7.73E-03
76	GO:0052544: defense response by callose deposition in cell wall	7.73E-03
77	GO:0009750: response to fructose	7.73E-03
78	GO:0048765: root hair cell differentiation	7.73E-03
79	GO:0016024: CDP-diacylglycerol biosynthetic process	8.49E-03
80	GO:0015706: nitrate transport	8.49E-03
81	GO:0009414: response to water deprivation	9.16E-03
82	GO:0010102: lateral root morphogenesis	9.29E-03
83	GO:0009785: blue light signaling pathway	9.29E-03
84	GO:0010628: positive regulation of gene expression	9.29E-03
85	GO:0006006: glucose metabolic process	9.29E-03
86	GO:0010229: inflorescence development	9.29E-03
87	GO:0009718: anthocyanin-containing compound biosynthetic process	9.29E-03
88	GO:0071555: cell wall organization	9.55E-03
89	GO:0009664: plant-type cell wall organization	9.93E-03
90	GO:0048467: gynoecium development	1.01E-02
91	GO:0006364: rRNA processing	1.07E-02
92	GO:0009225: nucleotide-sugar metabolic process	1.10E-02
93	GO:0009825: multidimensional cell growth	1.10E-02
94	GO:0071732: cellular response to nitric oxide	1.10E-02
95	GO:0010030: positive regulation of seed germination	1.10E-02
96	GO:0010053: root epidermal cell differentiation	1.10E-02
97	GO:0006857: oligopeptide transport	1.14E-02
98	GO:0080167: response to karrikin	1.15E-02
99	GO:0010025: wax biosynthetic process	1.18E-02
100	GO:0006636: unsaturated fatty acid biosynthetic process	1.18E-02
101	GO:0042023: DNA endoreduplication	1.18E-02
102	GO:0051017: actin filament bundle assembly	1.27E-02
103	GO:2000377: regulation of reactive oxygen species metabolic process	1.27E-02
104	GO:0006487: protein N-linked glycosylation	1.27E-02
105	GO:0019953: sexual reproduction	1.37E-02
106	GO:0007017: microtubule-based process	1.37E-02
107	GO:0003333: amino acid transmembrane transport	1.46E-02
108	GO:0016998: cell wall macromolecule catabolic process	1.46E-02
109	GO:0048511: rhythmic process	1.46E-02
110	GO:0009624: response to nematode	1.52E-02
111	GO:0055085: transmembrane transport	1.53E-02
112	GO:0030245: cellulose catabolic process	1.56E-02
113	GO:0051726: regulation of cell cycle	1.62E-02
114	GO:0009411: response to UV	1.66E-02
115	GO:0071369: cellular response to ethylene stimulus	1.66E-02
116	GO:0042127: regulation of cell proliferation	1.76E-02
117	GO:0009306: protein secretion	1.76E-02
118	GO:0032259: methylation	1.79E-02
119	GO:0006810: transport	1.85E-02
120	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
121	GO:0042631: cellular response to water deprivation	1.97E-02
122	GO:0042391: regulation of membrane potential	1.97E-02
123	GO:0080022: primary root development	1.97E-02
124	GO:0071472: cellular response to salt stress	2.07E-02
125	GO:0009958: positive gravitropism	2.07E-02
126	GO:0010305: leaf vascular tissue pattern formation	2.07E-02
127	GO:0010182: sugar mediated signaling pathway	2.07E-02
128	GO:0042744: hydrogen peroxide catabolic process	2.17E-02
129	GO:0015986: ATP synthesis coupled proton transport	2.18E-02
130	GO:0042752: regulation of circadian rhythm	2.18E-02
131	GO:0006633: fatty acid biosynthetic process	2.40E-02
132	GO:0000302: response to reactive oxygen species	2.41E-02
133	GO:0016032: viral process	2.52E-02
134	GO:0071281: cellular response to iron ion	2.64E-02
135	GO:0045490: pectin catabolic process	2.64E-02
136	GO:0010252: auxin homeostasis	2.76E-02
137	GO:0006468: protein phosphorylation	2.81E-02
138	GO:0071805: potassium ion transmembrane transport	2.88E-02
139	GO:0009734: auxin-activated signaling pathway	2.90E-02
140	GO:0009651: response to salt stress	2.94E-02
141	GO:0007166: cell surface receptor signaling pathway	3.01E-02
142	GO:0007165: signal transduction	3.33E-02
143	GO:0042128: nitrate assimilation	3.39E-02
144	GO:0009627: systemic acquired resistance	3.39E-02
145	GO:0009737: response to abscisic acid	3.45E-02
146	GO:0009733: response to auxin	3.62E-02
147	GO:0030244: cellulose biosynthetic process	3.78E-02
148	GO:0018298: protein-chromophore linkage	3.78E-02
149	GO:0000160: phosphorelay signal transduction system	3.92E-02
150	GO:0009826: unidimensional cell growth	3.92E-02
151	GO:0042254: ribosome biogenesis	4.15E-02
152	GO:0009631: cold acclimation	4.19E-02
153	GO:0007568: aging	4.19E-02
154	GO:0006865: amino acid transport	4.33E-02
155	GO:0009853: photorespiration	4.48E-02
156	GO:0007049: cell cycle	4.54E-02
157	GO:0034599: cellular response to oxidative stress	4.62E-02
158	GO:0009409: response to cold	4.73E-02
159	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0052689: carboxylic ester hydrolase activity	1.15E-06
6	GO:0005528: FK506 binding	2.05E-06
7	GO:0016788: hydrolase activity, acting on ester bonds	5.19E-05
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.76E-04
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.43E-04
10	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.43E-04
11	GO:0045485: omega-6 fatty acid desaturase activity	2.43E-04
12	GO:0015250: water channel activity	4.26E-04
13	GO:0003839: gamma-glutamylcyclotransferase activity	5.39E-04
14	GO:0004617: phosphoglycerate dehydrogenase activity	5.39E-04
15	GO:0004565: beta-galactosidase activity	6.91E-04
16	GO:0004871: signal transducer activity	7.67E-04
17	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.30E-04
18	GO:0050734: hydroxycinnamoyltransferase activity	8.75E-04
19	GO:0045548: phenylalanine ammonia-lyase activity	8.75E-04
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.75E-04
21	GO:0008864: formyltetrahydrofolate deformylase activity	8.75E-04
22	GO:0001872: (1->3)-beta-D-glucan binding	1.25E-03
23	GO:0016851: magnesium chelatase activity	1.25E-03
24	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.25E-03
25	GO:0015293: symporter activity	1.28E-03
26	GO:0030570: pectate lyase activity	1.53E-03
27	GO:0010011: auxin binding	1.67E-03
28	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.67E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.67E-03
30	GO:0052793: pectin acetylesterase activity	1.67E-03
31	GO:0050378: UDP-glucuronate 4-epimerase activity	1.67E-03
32	GO:0004392: heme oxygenase (decyclizing) activity	1.67E-03
33	GO:0015120: phosphoglycerate transmembrane transporter activity	1.67E-03
34	GO:0016746: transferase activity, transferring acyl groups	2.61E-03
35	GO:0004629: phospholipase C activity	2.62E-03
36	GO:0004130: cytochrome-c peroxidase activity	2.62E-03
37	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.62E-03
38	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.62E-03
39	GO:0016688: L-ascorbate peroxidase activity	2.62E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.62E-03
41	GO:0016791: phosphatase activity	3.11E-03
42	GO:0051753: mannan synthase activity	3.15E-03
43	GO:0004435: phosphatidylinositol phospholipase C activity	3.15E-03
44	GO:0005242: inward rectifier potassium channel activity	3.15E-03
45	GO:0016829: lyase activity	3.69E-03
46	GO:0043022: ribosome binding	4.31E-03
47	GO:0030247: polysaccharide binding	4.37E-03
48	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.33E-03
49	GO:0015112: nitrate transmembrane transporter activity	6.27E-03
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.82E-03
51	GO:0004568: chitinase activity	6.99E-03
52	GO:0008794: arsenate reductase (glutaredoxin) activity	7.73E-03
53	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	8.49E-03
54	GO:0004022: alcohol dehydrogenase (NAD) activity	9.29E-03
55	GO:0008266: poly(U) RNA binding	1.01E-02
56	GO:0005215: transporter activity	1.14E-02
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.18E-02
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.18E-02
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.18E-02
60	GO:0016491: oxidoreductase activity	1.54E-02
61	GO:0008810: cellulase activity	1.66E-02
62	GO:0022891: substrate-specific transmembrane transporter activity	1.66E-02
63	GO:0004672: protein kinase activity	1.85E-02
64	GO:0030551: cyclic nucleotide binding	1.97E-02
65	GO:0005249: voltage-gated potassium channel activity	1.97E-02
66	GO:0009055: electron carrier activity	2.07E-02
67	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.07E-02
68	GO:0050662: coenzyme binding	2.18E-02
69	GO:0019901: protein kinase binding	2.29E-02
70	GO:0004518: nuclease activity	2.52E-02
71	GO:0000156: phosphorelay response regulator activity	2.64E-02
72	GO:0051015: actin filament binding	2.64E-02
73	GO:0008289: lipid binding	2.86E-02
74	GO:0005200: structural constituent of cytoskeleton	2.88E-02
75	GO:0016597: amino acid binding	3.01E-02
76	GO:0016168: chlorophyll binding	3.26E-02
77	GO:0042802: identical protein binding	3.35E-02
78	GO:0008375: acetylglucosaminyltransferase activity	3.39E-02
79	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
80	GO:0008168: methyltransferase activity	3.92E-02
81	GO:0003746: translation elongation factor activity	4.48E-02
82	GO:0003993: acid phosphatase activity	4.62E-02
83	GO:0050661: NADP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009543: chloroplast thylakoid lumen	1.63E-08
2	GO:0009579: thylakoid	6.60E-08
3	GO:0009535: chloroplast thylakoid membrane	1.39E-07
4	GO:0009507: chloroplast	2.81E-07
5	GO:0009534: chloroplast thylakoid	7.32E-07
6	GO:0005886: plasma membrane	1.99E-05
7	GO:0031977: thylakoid lumen	1.16E-04
8	GO:0043674: columella	2.43E-04
9	GO:0009515: granal stacked thylakoid	2.43E-04
10	GO:0010007: magnesium chelatase complex	8.75E-04
11	GO:0032432: actin filament bundle	1.25E-03
12	GO:0015630: microtubule cytoskeleton	1.25E-03
13	GO:0005576: extracellular region	1.49E-03
14	GO:0031225: anchored component of membrane	1.69E-03
15	GO:0048046: apoplast	1.81E-03
16	GO:0005618: cell wall	2.27E-03
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.62E-03
18	GO:0009941: chloroplast envelope	3.51E-03
19	GO:0042807: central vacuole	3.72E-03
20	GO:0009986: cell surface	3.72E-03
21	GO:0009505: plant-type cell wall	4.42E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.59E-03
23	GO:0008180: COP9 signalosome	5.59E-03
24	GO:0005887: integral component of plasma membrane	7.11E-03
25	GO:0046658: anchored component of plasma membrane	7.19E-03
26	GO:0005884: actin filament	7.73E-03
27	GO:0031969: chloroplast membrane	1.15E-02
28	GO:0009654: photosystem II oxygen evolving complex	1.37E-02
29	GO:0009706: chloroplast inner membrane	1.52E-02
30	GO:0010287: plastoglobule	1.81E-02
31	GO:0009523: photosystem II	2.29E-02
32	GO:0019898: extrinsic component of membrane	2.29E-02
33	GO:0016021: integral component of membrane	2.69E-02
34	GO:0032580: Golgi cisterna membrane	2.76E-02
35	GO:0010319: stromule	2.88E-02
36	GO:0019005: SCF ubiquitin ligase complex	3.78E-02
37	GO:0000151: ubiquitin ligase complex	3.78E-02
38	GO:0016020: membrane	4.10E-02
39	GO:0009570: chloroplast stroma	4.46E-02