GO Enrichment Analysis of Co-expressed Genes with
AT3G28080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 4 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 5 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 6 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0009249: protein lipoylation | 0.00E+00 |
| 8 | GO:0019253: reductive pentose-phosphate cycle | 3.99E-09 |
| 9 | GO:0009767: photosynthetic electron transport chain | 1.69E-05 |
| 10 | GO:0006546: glycine catabolic process | 2.45E-05 |
| 11 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.45E-05 |
| 12 | GO:0016117: carotenoid biosynthetic process | 8.36E-05 |
| 13 | GO:0009658: chloroplast organization | 1.48E-04 |
| 14 | GO:0006438: valyl-tRNA aminoacylation | 1.80E-04 |
| 15 | GO:0000023: maltose metabolic process | 1.80E-04 |
| 16 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.80E-04 |
| 17 | GO:0006810: transport | 1.85E-04 |
| 18 | GO:0009773: photosynthetic electron transport in photosystem I | 3.48E-04 |
| 19 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.48E-04 |
| 20 | GO:0006695: cholesterol biosynthetic process | 4.05E-04 |
| 21 | GO:0009629: response to gravity | 4.05E-04 |
| 22 | GO:0007154: cell communication | 4.05E-04 |
| 23 | GO:0080183: response to photooxidative stress | 4.05E-04 |
| 24 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.05E-04 |
| 25 | GO:2000123: positive regulation of stomatal complex development | 4.05E-04 |
| 26 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.05E-04 |
| 27 | GO:0043039: tRNA aminoacylation | 4.05E-04 |
| 28 | GO:0009853: photorespiration | 4.69E-04 |
| 29 | GO:0009409: response to cold | 6.05E-04 |
| 30 | GO:0006000: fructose metabolic process | 6.61E-04 |
| 31 | GO:0006696: ergosterol biosynthetic process | 6.61E-04 |
| 32 | GO:0006418: tRNA aminoacylation for protein translation | 7.77E-04 |
| 33 | GO:0046686: response to cadmium ion | 8.25E-04 |
| 34 | GO:0061077: chaperone-mediated protein folding | 8.51E-04 |
| 35 | GO:0006730: one-carbon metabolic process | 9.27E-04 |
| 36 | GO:0046902: regulation of mitochondrial membrane permeability | 9.45E-04 |
| 37 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.45E-04 |
| 38 | GO:0033014: tetrapyrrole biosynthetic process | 9.45E-04 |
| 39 | GO:2001141: regulation of RNA biosynthetic process | 9.45E-04 |
| 40 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.45E-04 |
| 41 | GO:0010239: chloroplast mRNA processing | 9.45E-04 |
| 42 | GO:0006096: glycolytic process | 1.15E-03 |
| 43 | GO:2000122: negative regulation of stomatal complex development | 1.25E-03 |
| 44 | GO:2000038: regulation of stomatal complex development | 1.25E-03 |
| 45 | GO:0010037: response to carbon dioxide | 1.25E-03 |
| 46 | GO:0006542: glutamine biosynthetic process | 1.25E-03 |
| 47 | GO:0006479: protein methylation | 1.25E-03 |
| 48 | GO:0019676: ammonia assimilation cycle | 1.25E-03 |
| 49 | GO:0015976: carbon utilization | 1.25E-03 |
| 50 | GO:0045727: positive regulation of translation | 1.25E-03 |
| 51 | GO:0010375: stomatal complex patterning | 1.59E-03 |
| 52 | GO:0009247: glycolipid biosynthetic process | 1.59E-03 |
| 53 | GO:0010236: plastoquinone biosynthetic process | 1.59E-03 |
| 54 | GO:0009107: lipoate biosynthetic process | 1.59E-03 |
| 55 | GO:0016123: xanthophyll biosynthetic process | 1.59E-03 |
| 56 | GO:0016554: cytidine to uridine editing | 1.96E-03 |
| 57 | GO:0010190: cytochrome b6f complex assembly | 1.96E-03 |
| 58 | GO:0042549: photosystem II stabilization | 1.96E-03 |
| 59 | GO:0042026: protein refolding | 2.35E-03 |
| 60 | GO:0006458: 'de novo' protein folding | 2.35E-03 |
| 61 | GO:0017148: negative regulation of translation | 2.35E-03 |
| 62 | GO:0009854: oxidative photosynthetic carbon pathway | 2.35E-03 |
| 63 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.35E-03 |
| 64 | GO:0008610: lipid biosynthetic process | 3.21E-03 |
| 65 | GO:0019375: galactolipid biosynthetic process | 3.21E-03 |
| 66 | GO:0000105: histidine biosynthetic process | 3.21E-03 |
| 67 | GO:0048564: photosystem I assembly | 3.21E-03 |
| 68 | GO:0048193: Golgi vesicle transport | 3.67E-03 |
| 69 | GO:0009657: plastid organization | 3.67E-03 |
| 70 | GO:0032544: plastid translation | 3.67E-03 |
| 71 | GO:0006002: fructose 6-phosphate metabolic process | 3.67E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 3.67E-03 |
| 73 | GO:0016051: carbohydrate biosynthetic process | 3.98E-03 |
| 74 | GO:0045337: farnesyl diphosphate biosynthetic process | 4.15E-03 |
| 75 | GO:0033384: geranyl diphosphate biosynthetic process | 4.15E-03 |
| 76 | GO:0006783: heme biosynthetic process | 4.15E-03 |
| 77 | GO:1900865: chloroplast RNA modification | 4.65E-03 |
| 78 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.65E-03 |
| 79 | GO:0009735: response to cytokinin | 4.81E-03 |
| 80 | GO:0009744: response to sucrose | 5.12E-03 |
| 81 | GO:0006535: cysteine biosynthetic process from serine | 5.18E-03 |
| 82 | GO:0009416: response to light stimulus | 5.52E-03 |
| 83 | GO:0006415: translational termination | 5.72E-03 |
| 84 | GO:0019684: photosynthesis, light reaction | 5.72E-03 |
| 85 | GO:0006352: DNA-templated transcription, initiation | 5.72E-03 |
| 86 | GO:0000272: polysaccharide catabolic process | 5.72E-03 |
| 87 | GO:0000038: very long-chain fatty acid metabolic process | 5.72E-03 |
| 88 | GO:0005983: starch catabolic process | 6.28E-03 |
| 89 | GO:0045037: protein import into chloroplast stroma | 6.28E-03 |
| 90 | GO:0006006: glucose metabolic process | 6.86E-03 |
| 91 | GO:0006094: gluconeogenesis | 6.86E-03 |
| 92 | GO:0005986: sucrose biosynthetic process | 6.86E-03 |
| 93 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.92E-03 |
| 94 | GO:0010020: chloroplast fission | 7.46E-03 |
| 95 | GO:0010207: photosystem II assembly | 7.46E-03 |
| 96 | GO:0090351: seedling development | 8.08E-03 |
| 97 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.71E-03 |
| 98 | GO:0019344: cysteine biosynthetic process | 9.37E-03 |
| 99 | GO:0080092: regulation of pollen tube growth | 1.14E-02 |
| 100 | GO:0006284: base-excision repair | 1.29E-02 |
| 101 | GO:0042335: cuticle development | 1.44E-02 |
| 102 | GO:0009790: embryo development | 1.44E-02 |
| 103 | GO:0000271: polysaccharide biosynthetic process | 1.44E-02 |
| 104 | GO:0042631: cellular response to water deprivation | 1.44E-02 |
| 105 | GO:0045489: pectin biosynthetic process | 1.52E-02 |
| 106 | GO:0006633: fatty acid biosynthetic process | 1.55E-02 |
| 107 | GO:0042742: defense response to bacterium | 1.60E-02 |
| 108 | GO:0019252: starch biosynthetic process | 1.68E-02 |
| 109 | GO:0007623: circadian rhythm | 1.71E-02 |
| 110 | GO:0009793: embryo development ending in seed dormancy | 1.91E-02 |
| 111 | GO:0008380: RNA splicing | 2.04E-02 |
| 112 | GO:0010286: heat acclimation | 2.11E-02 |
| 113 | GO:0007267: cell-cell signaling | 2.11E-02 |
| 114 | GO:0010027: thylakoid membrane organization | 2.30E-02 |
| 115 | GO:0016126: sterol biosynthetic process | 2.30E-02 |
| 116 | GO:0042128: nitrate assimilation | 2.48E-02 |
| 117 | GO:0009817: defense response to fungus, incompatible interaction | 2.77E-02 |
| 118 | GO:0018298: protein-chromophore linkage | 2.77E-02 |
| 119 | GO:0055114: oxidation-reduction process | 2.84E-02 |
| 120 | GO:0005975: carbohydrate metabolic process | 2.97E-02 |
| 121 | GO:0010119: regulation of stomatal movement | 3.08E-02 |
| 122 | GO:0007568: aging | 3.08E-02 |
| 123 | GO:0080167: response to karrikin | 3.27E-02 |
| 124 | GO:0006839: mitochondrial transport | 3.60E-02 |
| 125 | GO:0042538: hyperosmotic salinity response | 4.62E-02 |
| 126 | GO:0006281: DNA repair | 4.81E-02 |
| 127 | GO:0006364: rRNA processing | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 5 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 6 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 7 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 8 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 9 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 10 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 11 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 12 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.81E-07 |
| 13 | GO:0004618: phosphoglycerate kinase activity | 1.55E-06 |
| 14 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.55E-06 |
| 15 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.33E-05 |
| 16 | GO:0005528: FK506 binding | 3.60E-05 |
| 17 | GO:0004831: tyrosine-tRNA ligase activity | 1.80E-04 |
| 18 | GO:0004325: ferrochelatase activity | 1.80E-04 |
| 19 | GO:0051996: squalene synthase activity | 1.80E-04 |
| 20 | GO:0010313: phytochrome binding | 1.80E-04 |
| 21 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1.80E-04 |
| 22 | GO:0004832: valine-tRNA ligase activity | 1.80E-04 |
| 23 | GO:0004400: histidinol-phosphate transaminase activity | 1.80E-04 |
| 24 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.05E-04 |
| 25 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.05E-04 |
| 26 | GO:0050017: L-3-cyanoalanine synthase activity | 4.05E-04 |
| 27 | GO:0010291: carotene beta-ring hydroxylase activity | 4.05E-04 |
| 28 | GO:0017118: lipoyltransferase activity | 4.05E-04 |
| 29 | GO:0042389: omega-3 fatty acid desaturase activity | 4.05E-04 |
| 30 | GO:0010297: heteropolysaccharide binding | 4.05E-04 |
| 31 | GO:0016415: octanoyltransferase activity | 4.05E-04 |
| 32 | GO:0004047: aminomethyltransferase activity | 4.05E-04 |
| 33 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.05E-04 |
| 34 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.05E-04 |
| 35 | GO:0031072: heat shock protein binding | 4.55E-04 |
| 36 | GO:0003913: DNA photolyase activity | 6.61E-04 |
| 37 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.61E-04 |
| 38 | GO:0004751: ribose-5-phosphate isomerase activity | 6.61E-04 |
| 39 | GO:0030267: glyoxylate reductase (NADP) activity | 6.61E-04 |
| 40 | GO:0004324: ferredoxin-NADP+ reductase activity | 6.61E-04 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.84E-04 |
| 42 | GO:0048027: mRNA 5'-UTR binding | 9.45E-04 |
| 43 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.45E-04 |
| 44 | GO:0035250: UDP-galactosyltransferase activity | 9.45E-04 |
| 45 | GO:0016149: translation release factor activity, codon specific | 9.45E-04 |
| 46 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 9.45E-04 |
| 47 | GO:0008276: protein methyltransferase activity | 9.45E-04 |
| 48 | GO:0004812: aminoacyl-tRNA ligase activity | 1.18E-03 |
| 49 | GO:0016987: sigma factor activity | 1.25E-03 |
| 50 | GO:0001053: plastid sigma factor activity | 1.25E-03 |
| 51 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.25E-03 |
| 52 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.25E-03 |
| 53 | GO:0051082: unfolded protein binding | 1.45E-03 |
| 54 | GO:0019901: protein kinase binding | 1.57E-03 |
| 55 | GO:0003959: NADPH dehydrogenase activity | 1.59E-03 |
| 56 | GO:0005471: ATP:ADP antiporter activity | 1.59E-03 |
| 57 | GO:0004356: glutamate-ammonia ligase activity | 1.59E-03 |
| 58 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.59E-03 |
| 59 | GO:0042578: phosphoric ester hydrolase activity | 1.96E-03 |
| 60 | GO:0080030: methyl indole-3-acetate esterase activity | 1.96E-03 |
| 61 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.35E-03 |
| 62 | GO:0004124: cysteine synthase activity | 2.35E-03 |
| 63 | GO:0009881: photoreceptor activity | 2.77E-03 |
| 64 | GO:0004033: aldo-keto reductase (NADP) activity | 3.21E-03 |
| 65 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.67E-03 |
| 66 | GO:0003747: translation release factor activity | 4.15E-03 |
| 67 | GO:0004337: geranyltranstransferase activity | 4.15E-03 |
| 68 | GO:0016787: hydrolase activity | 5.36E-03 |
| 69 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.54E-03 |
| 70 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.72E-03 |
| 71 | GO:0044183: protein binding involved in protein folding | 5.72E-03 |
| 72 | GO:0004161: dimethylallyltranstransferase activity | 5.72E-03 |
| 73 | GO:0005198: structural molecule activity | 5.75E-03 |
| 74 | GO:0051287: NAD binding | 6.20E-03 |
| 75 | GO:0008081: phosphoric diester hydrolase activity | 6.86E-03 |
| 76 | GO:0004089: carbonate dehydratase activity | 6.86E-03 |
| 77 | GO:0008266: poly(U) RNA binding | 7.46E-03 |
| 78 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.71E-03 |
| 79 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.71E-03 |
| 80 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.71E-03 |
| 81 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.14E-02 |
| 82 | GO:0019843: rRNA binding | 1.23E-02 |
| 83 | GO:0003756: protein disulfide isomerase activity | 1.29E-02 |
| 84 | GO:0050662: coenzyme binding | 1.60E-02 |
| 85 | GO:0048038: quinone binding | 1.77E-02 |
| 86 | GO:0003824: catalytic activity | 1.84E-02 |
| 87 | GO:0004518: nuclease activity | 1.85E-02 |
| 88 | GO:0008483: transaminase activity | 2.11E-02 |
| 89 | GO:0016597: amino acid binding | 2.20E-02 |
| 90 | GO:0016491: oxidoreductase activity | 2.41E-02 |
| 91 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.68E-02 |
| 92 | GO:0016788: hydrolase activity, acting on ester bonds | 2.69E-02 |
| 93 | GO:0016740: transferase activity | 2.88E-02 |
| 94 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.97E-02 |
| 95 | GO:0050897: cobalt ion binding | 3.08E-02 |
| 96 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.39E-02 |
| 97 | GO:0050661: NADP binding | 3.60E-02 |
| 98 | GO:0005524: ATP binding | 4.07E-02 |
| 99 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.86E-02 |
| 100 | GO:0005509: calcium ion binding | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.75E-31 |
| 3 | GO:0009941: chloroplast envelope | 8.92E-19 |
| 4 | GO:0009570: chloroplast stroma | 4.92E-16 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.18E-15 |
| 6 | GO:0009579: thylakoid | 4.62E-10 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.81E-09 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.24E-08 |
| 9 | GO:0009534: chloroplast thylakoid | 1.13E-06 |
| 10 | GO:0010319: stromule | 1.06E-05 |
| 11 | GO:0005960: glycine cleavage complex | 1.33E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 2.08E-05 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 4.22E-05 |
| 14 | GO:0031977: thylakoid lumen | 5.25E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.30E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 1.97E-04 |
| 17 | GO:0031969: chloroplast membrane | 2.28E-04 |
| 18 | GO:0042170: plastid membrane | 4.05E-04 |
| 19 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.05E-04 |
| 20 | GO:0048046: apoplast | 5.78E-04 |
| 21 | GO:0055035: plastid thylakoid membrane | 1.59E-03 |
| 22 | GO:0010287: plastoglobule | 1.80E-03 |
| 23 | GO:0016324: apical plasma membrane | 5.18E-03 |
| 24 | GO:0009508: plastid chromosome | 6.86E-03 |
| 25 | GO:0030176: integral component of endoplasmic reticulum membrane | 8.08E-03 |
| 26 | GO:0042651: thylakoid membrane | 1.00E-02 |
| 27 | GO:0009532: plastid stroma | 1.07E-02 |
| 28 | GO:0005759: mitochondrial matrix | 1.55E-02 |
| 29 | GO:0009523: photosystem II | 1.68E-02 |
| 30 | GO:0009295: nucleoid | 2.11E-02 |
| 31 | GO:0005778: peroxisomal membrane | 2.11E-02 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 2.30E-02 |
| 33 | GO:0005856: cytoskeleton | 4.27E-02 |
| 34 | GO:0005743: mitochondrial inner membrane | 4.48E-02 |