co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:1905499: trichome papilla formation	0.00E+00
4	GO:0009956: radial pattern formation	1.63E-05
5	GO:0042335: cuticle development	5.71E-05
6	GO:0009735: response to cytokinin	1.09E-04
7	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.42E-04
8	GO:0046520: sphingoid biosynthetic process	1.42E-04
9	GO:0071277: cellular response to calcium ion	1.42E-04
10	GO:0033481: galacturonate biosynthetic process	1.42E-04
11	GO:0042371: vitamin K biosynthetic process	1.42E-04
12	GO:1902458: positive regulation of stomatal opening	1.42E-04
13	GO:0010115: regulation of abscisic acid biosynthetic process	3.25E-04
14	GO:0001736: establishment of planar polarity	3.25E-04
15	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.25E-04
16	GO:0009933: meristem structural organization	3.70E-04
17	GO:0010025: wax biosynthetic process	4.63E-04
18	GO:0015714: phosphoenolpyruvate transport	5.33E-04
19	GO:0090391: granum assembly	5.33E-04
20	GO:0009650: UV protection	7.63E-04
21	GO:0010371: regulation of gibberellin biosynthetic process	7.63E-04
22	GO:0010305: leaf vascular tissue pattern formation	9.96E-04
23	GO:0010182: sugar mediated signaling pathway	9.96E-04
24	GO:0015689: molybdate ion transport	1.01E-03
25	GO:0006183: GTP biosynthetic process	1.01E-03
26	GO:0045727: positive regulation of translation	1.01E-03
27	GO:0015713: phosphoglycerate transport	1.01E-03
28	GO:0006869: lipid transport	1.16E-03
29	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.22E-03
30	GO:0006665: sphingolipid metabolic process	1.28E-03
31	GO:0030308: negative regulation of cell growth	1.28E-03
32	GO:0006564: L-serine biosynthetic process	1.28E-03
33	GO:0010236: plastoquinone biosynthetic process	1.28E-03
34	GO:0045038: protein import into chloroplast thylakoid membrane	1.28E-03
35	GO:0009913: epidermal cell differentiation	1.57E-03
36	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.57E-03
37	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.57E-03
38	GO:0006561: proline biosynthetic process	1.57E-03
39	GO:0010405: arabinogalactan protein metabolic process	1.57E-03
40	GO:0010027: thylakoid membrane organization	1.74E-03
41	GO:0006694: steroid biosynthetic process	1.88E-03
42	GO:0010189: vitamin E biosynthetic process	1.88E-03
43	GO:0015995: chlorophyll biosynthetic process	2.05E-03
44	GO:0010411: xyloglucan metabolic process	2.05E-03
45	GO:0009395: phospholipid catabolic process	2.21E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	2.21E-03
47	GO:0010196: nonphotochemical quenching	2.21E-03
48	GO:0050829: defense response to Gram-negative bacterium	2.21E-03
49	GO:1900057: positive regulation of leaf senescence	2.21E-03
50	GO:0010444: guard mother cell differentiation	2.21E-03
51	GO:0071555: cell wall organization	2.47E-03
52	GO:0008610: lipid biosynthetic process	2.56E-03
53	GO:0030091: protein repair	2.56E-03
54	GO:0042255: ribosome assembly	2.56E-03
55	GO:0009704: de-etiolation	2.56E-03
56	GO:2000070: regulation of response to water deprivation	2.56E-03
57	GO:0031540: regulation of anthocyanin biosynthetic process	2.56E-03
58	GO:0016559: peroxisome fission	2.56E-03
59	GO:0015996: chlorophyll catabolic process	2.93E-03
60	GO:0007186: G-protein coupled receptor signaling pathway	2.93E-03
61	GO:0032544: plastid translation	2.93E-03
62	GO:0009808: lignin metabolic process	2.93E-03
63	GO:0034765: regulation of ion transmembrane transport	3.31E-03
64	GO:0090333: regulation of stomatal closure	3.31E-03
65	GO:0042254: ribosome biogenesis	3.38E-03
66	GO:0009640: photomorphogenesis	3.68E-03
67	GO:0009926: auxin polar transport	3.68E-03
68	GO:0010205: photoinhibition	3.71E-03
69	GO:0042761: very long-chain fatty acid biosynthetic process	3.71E-03
70	GO:0042546: cell wall biogenesis	3.83E-03
71	GO:0009688: abscisic acid biosynthetic process	4.12E-03
72	GO:0048829: root cap development	4.12E-03
73	GO:0010015: root morphogenesis	4.55E-03
74	GO:0000038: very long-chain fatty acid metabolic process	4.55E-03
75	GO:0009773: photosynthetic electron transport in photosystem I	4.55E-03
76	GO:0008285: negative regulation of cell proliferation	4.55E-03
77	GO:0009750: response to fructose	4.55E-03
78	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
79	GO:0048765: root hair cell differentiation	4.55E-03
80	GO:0006820: anion transport	4.99E-03
81	GO:0016024: CDP-diacylglycerol biosynthetic process	4.99E-03
82	GO:0045037: protein import into chloroplast stroma	4.99E-03
83	GO:0005975: carbohydrate metabolic process	5.13E-03
84	GO:0015979: photosynthesis	5.13E-03
85	GO:0006006: glucose metabolic process	5.45E-03
86	GO:0010229: inflorescence development	5.45E-03
87	GO:0009718: anthocyanin-containing compound biosynthetic process	5.45E-03
88	GO:0009725: response to hormone	5.45E-03
89	GO:0006096: glycolytic process	5.85E-03
90	GO:0048467: gynoecium development	5.92E-03
91	GO:0010143: cutin biosynthetic process	5.92E-03
92	GO:0010020: chloroplast fission	5.92E-03
93	GO:0010207: photosystem II assembly	5.92E-03
94	GO:0019253: reductive pentose-phosphate cycle	5.92E-03
95	GO:0010540: basipetal auxin transport	5.92E-03
96	GO:0009225: nucleotide-sugar metabolic process	6.41E-03
97	GO:0009825: multidimensional cell growth	6.41E-03
98	GO:0071732: cellular response to nitric oxide	6.41E-03
99	GO:0016042: lipid catabolic process	6.86E-03
100	GO:0006636: unsaturated fatty acid biosynthetic process	6.91E-03
101	GO:0042023: DNA endoreduplication	6.91E-03
102	GO:0000027: ribosomal large subunit assembly	7.42E-03
103	GO:0006487: protein N-linked glycosylation	7.42E-03
104	GO:0009742: brassinosteroid mediated signaling pathway	7.46E-03
105	GO:0007017: microtubule-based process	7.95E-03
106	GO:0010073: meristem maintenance	7.95E-03
107	GO:0031408: oxylipin biosynthetic process	8.49E-03
108	GO:0003333: amino acid transmembrane transport	8.49E-03
109	GO:0016998: cell wall macromolecule catabolic process	8.49E-03
110	GO:0030245: cellulose catabolic process	9.05E-03
111	GO:0009411: response to UV	9.62E-03
112	GO:0071369: cellular response to ethylene stimulus	9.62E-03
113	GO:0010227: floral organ abscission	9.62E-03
114	GO:0010091: trichome branching	1.02E-02
115	GO:0019722: calcium-mediated signaling	1.02E-02
116	GO:0042127: regulation of cell proliferation	1.02E-02
117	GO:0009734: auxin-activated signaling pathway	1.10E-02
118	GO:0006633: fatty acid biosynthetic process	1.11E-02
119	GO:0055114: oxidation-reduction process	1.11E-02
120	GO:0042391: regulation of membrane potential	1.14E-02
121	GO:0009958: positive gravitropism	1.20E-02
122	GO:0009741: response to brassinosteroid	1.20E-02
123	GO:0007623: circadian rhythm	1.22E-02
124	GO:0045490: pectin catabolic process	1.22E-02
125	GO:0015986: ATP synthesis coupled proton transport	1.26E-02
126	GO:0002229: defense response to oomycetes	1.39E-02
127	GO:0016132: brassinosteroid biosynthetic process	1.39E-02
128	GO:0032502: developmental process	1.46E-02
129	GO:0009416: response to light stimulus	1.47E-02
130	GO:0071281: cellular response to iron ion	1.53E-02
131	GO:1901657: glycosyl compound metabolic process	1.53E-02
132	GO:0010252: auxin homeostasis	1.60E-02
133	GO:0071805: potassium ion transmembrane transport	1.67E-02
134	GO:0007267: cell-cell signaling	1.67E-02
135	GO:0045893: positive regulation of transcription, DNA-templated	1.76E-02
136	GO:0009658: chloroplast organization	1.89E-02
137	GO:0009627: systemic acquired resistance	1.96E-02
138	GO:0042128: nitrate assimilation	1.96E-02
139	GO:0048573: photoperiodism, flowering	2.03E-02
140	GO:0000160: phosphorelay signal transduction system	2.26E-02
141	GO:0010311: lateral root formation	2.26E-02
142	GO:0009834: plant-type secondary cell wall biogenesis	2.34E-02
143	GO:0009407: toxin catabolic process	2.34E-02
144	GO:0007568: aging	2.42E-02
145	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
146	GO:0006865: amino acid transport	2.51E-02
147	GO:0009637: response to blue light	2.59E-02
148	GO:0008283: cell proliferation	3.10E-02
149	GO:0009744: response to sucrose	3.10E-02
150	GO:0008643: carbohydrate transport	3.28E-02
151	GO:0009636: response to toxic substance	3.37E-02
152	GO:0009965: leaf morphogenesis	3.37E-02
153	GO:0009753: response to jasmonic acid	3.71E-02
154	GO:0009809: lignin biosynthetic process	3.83E-02
155	GO:0006364: rRNA processing	3.83E-02
156	GO:0009736: cytokinin-activated signaling pathway	3.83E-02
157	GO:0006857: oligopeptide transport	4.02E-02
158	GO:0048316: seed development	4.42E-02
159	GO:0009624: response to nematode	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:1990534: thermospermine oxidase activity	0.00E+00
8	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
9	GO:0000170: sphingosine hydroxylase activity	1.42E-04
10	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.42E-04
11	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.42E-04
12	GO:0019210: kinase inhibitor activity	1.42E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.42E-04
14	GO:0019843: rRNA binding	1.64E-04
15	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.52E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	3.25E-04
17	GO:0003938: IMP dehydrogenase activity	3.25E-04
18	GO:0042284: sphingolipid delta-4 desaturase activity	3.25E-04
19	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.25E-04
20	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.33E-04
21	GO:0016788: hydrolase activity, acting on ester bonds	5.75E-04
22	GO:0030570: pectate lyase activity	7.35E-04
23	GO:0016851: magnesium chelatase activity	7.63E-04
24	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	7.63E-04
25	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.63E-04
26	GO:0052689: carboxylic ester hydrolase activity	9.00E-04
27	GO:0010011: auxin binding	1.01E-03
28	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.01E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.01E-03
30	GO:0052793: pectin acetylesterase activity	1.01E-03
31	GO:0015098: molybdate ion transmembrane transporter activity	1.01E-03
32	GO:0050378: UDP-glucuronate 4-epimerase activity	1.01E-03
33	GO:0015120: phosphoglycerate transmembrane transporter activity	1.01E-03
34	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.22E-03
35	GO:0008381: mechanically-gated ion channel activity	1.28E-03
36	GO:0009922: fatty acid elongase activity	1.28E-03
37	GO:0004040: amidase activity	1.28E-03
38	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.57E-03
39	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.57E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.57E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.88E-03
42	GO:0005242: inward rectifier potassium channel activity	1.88E-03
43	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.05E-03
44	GO:0052747: sinapyl alcohol dehydrogenase activity	2.56E-03
45	GO:0042802: identical protein binding	2.57E-03
46	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.93E-03
47	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.31E-03
48	GO:0015293: symporter activity	4.13E-03
49	GO:0051287: NAD binding	4.45E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.99E-03
51	GO:0003690: double-stranded DNA binding	5.12E-03
52	GO:0004565: beta-galactosidase activity	5.45E-03
53	GO:0004022: alcohol dehydrogenase (NAD) activity	5.45E-03
54	GO:0008266: poly(U) RNA binding	5.92E-03
55	GO:0008131: primary amine oxidase activity	5.92E-03
56	GO:0008146: sulfotransferase activity	6.41E-03
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.91E-03
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.91E-03
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.91E-03
60	GO:0016746: transferase activity, transferring acyl groups	7.24E-03
61	GO:0005528: FK506 binding	7.42E-03
62	GO:0008810: cellulase activity	9.62E-03
63	GO:0003727: single-stranded RNA binding	1.02E-02
64	GO:0008289: lipid binding	1.08E-02
65	GO:0003824: catalytic activity	1.11E-02
66	GO:0030551: cyclic nucleotide binding	1.14E-02
67	GO:0005249: voltage-gated potassium channel activity	1.14E-02
68	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.20E-02
69	GO:0050662: coenzyme binding	1.26E-02
70	GO:0004872: receptor activity	1.33E-02
71	GO:0000156: phosphorelay response regulator activity	1.53E-02
72	GO:0016791: phosphatase activity	1.60E-02
73	GO:0016759: cellulose synthase activity	1.60E-02
74	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.67E-02
75	GO:0005200: structural constituent of cytoskeleton	1.67E-02
76	GO:0016597: amino acid binding	1.74E-02
77	GO:0008375: acetylglucosaminyltransferase activity	1.96E-02
78	GO:0102483: scopolin beta-glucosidase activity	2.03E-02
79	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.11E-02
80	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.34E-02
81	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.42E-02
82	GO:0003993: acid phosphatase activity	2.67E-02
83	GO:0008422: beta-glucosidase activity	2.76E-02
84	GO:0005525: GTP binding	2.76E-02
85	GO:0050661: NADP binding	2.84E-02
86	GO:0004364: glutathione transferase activity	3.01E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.46E-02
88	GO:0003924: GTPase activity	3.46E-02
89	GO:0005215: transporter activity	4.04E-02
90	GO:0015171: amino acid transmembrane transporter activity	4.12E-02
91	GO:0030599: pectinesterase activity	4.72E-02
92	GO:0016491: oxidoreductase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0048046: apoplast	1.81E-07
3	GO:0009534: chloroplast thylakoid	3.08E-05
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.42E-04
5	GO:0009515: granal stacked thylakoid	1.42E-04
6	GO:0009923: fatty acid elongase complex	1.42E-04
7	GO:0009579: thylakoid	2.03E-04
8	GO:0009570: chloroplast stroma	3.64E-04
9	GO:0009528: plastid inner membrane	5.33E-04
10	GO:0010007: magnesium chelatase complex	5.33E-04
11	GO:0015630: microtubule cytoskeleton	7.63E-04
12	GO:0009507: chloroplast	8.05E-04
13	GO:0009535: chloroplast thylakoid membrane	8.70E-04
14	GO:0009505: plant-type cell wall	9.58E-04
15	GO:0005618: cell wall	9.60E-04
16	GO:0009527: plastid outer membrane	1.01E-03
17	GO:0005576: extracellular region	1.10E-03
18	GO:0009941: chloroplast envelope	1.44E-03
19	GO:0010319: stromule	1.56E-03
20	GO:0031225: anchored component of membrane	1.56E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.57E-03
22	GO:0005886: plasma membrane	1.79E-03
23	GO:0009986: cell surface	2.21E-03
24	GO:0009707: chloroplast outer membrane	2.27E-03
25	GO:0008180: COP9 signalosome	3.31E-03
26	GO:0030095: chloroplast photosystem II	5.92E-03
27	GO:0009654: photosystem II oxygen evolving complex	7.95E-03
28	GO:0010287: plastoglobule	8.35E-03
29	GO:0009532: plastid stroma	8.49E-03
30	GO:0009543: chloroplast thylakoid lumen	8.81E-03
31	GO:0016021: integral component of membrane	9.28E-03
32	GO:0016020: membrane	1.26E-02
33	GO:0019898: extrinsic component of membrane	1.33E-02
34	GO:0005794: Golgi apparatus	1.40E-02
35	GO:0032580: Golgi cisterna membrane	1.60E-02
36	GO:0046658: anchored component of plasma membrane	1.62E-02
37	GO:0009506: plasmodesma	1.63E-02
38	GO:0005777: peroxisome	1.76E-02
39	GO:0005789: endoplasmic reticulum membrane	1.83E-02
40	GO:0019005: SCF ubiquitin ligase complex	2.19E-02
41	GO:0031969: chloroplast membrane	2.35E-02
42	GO:0005783: endoplasmic reticulum	2.71E-02
43	GO:0031977: thylakoid lumen	2.93E-02
44	GO:0005768: endosome	3.13E-02
45	GO:0005840: ribosome	3.78E-02
46	GO:0000502: proteasome complex	3.83E-02
47	GO:0009536: plastid	4.58E-02
48	GO:0009706: chloroplast inner membrane	4.92E-02