co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:1901038: cyanidin 3-O-glucoside metabolic process	0.00E+00
3	GO:0080167: response to karrikin	4.11E-08
4	GO:0009813: flavonoid biosynthetic process	8.53E-08
5	GO:0051555: flavonol biosynthetic process	1.54E-05
6	GO:0071555: cell wall organization	3.63E-05
7	GO:0009411: response to UV	1.13E-04
8	GO:0000271: polysaccharide biosynthetic process	1.62E-04
9	GO:0045489: pectin biosynthetic process	1.80E-04
10	GO:0010224: response to UV-B	2.17E-04
11	GO:1901537: positive regulation of DNA demethylation	2.34E-04
12	GO:0050691: regulation of defense response to virus by host	2.34E-04
13	GO:0033481: galacturonate biosynthetic process	2.34E-04
14	GO:0048438: floral whorl development	2.34E-04
15	GO:0009733: response to auxin	2.52E-04
16	GO:0010411: xyloglucan metabolic process	4.90E-04
17	GO:0071395: cellular response to jasmonic acid stimulus	5.20E-04
18	GO:0009629: response to gravity	5.20E-04
19	GO:0007154: cell communication	5.20E-04
20	GO:0071497: cellular response to freezing	5.20E-04
21	GO:0010220: positive regulation of vernalization response	5.20E-04
22	GO:1900386: positive regulation of flavonol biosynthetic process	5.20E-04
23	GO:0009718: anthocyanin-containing compound biosynthetic process	6.54E-04
24	GO:0030036: actin cytoskeleton organization	6.54E-04
25	GO:0009225: nucleotide-sugar metabolic process	8.23E-04
26	GO:0052324: plant-type cell wall cellulose biosynthetic process	8.44E-04
27	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	8.44E-04
28	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	8.44E-04
29	GO:0010253: UDP-rhamnose biosynthetic process	8.44E-04
30	GO:0042546: cell wall biogenesis	1.08E-03
31	GO:1902358: sulfate transmembrane transport	1.20E-03
32	GO:0051016: barbed-end actin filament capping	1.20E-03
33	GO:0009741: response to brassinosteroid	1.97E-03
34	GO:0016123: xanthophyll biosynthetic process	2.05E-03
35	GO:0071368: cellular response to cytokinin stimulus	2.05E-03
36	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-03
37	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.52E-03
38	GO:0042732: D-xylose metabolic process	2.52E-03
39	GO:0010315: auxin efflux	2.52E-03
40	GO:0000060: protein import into nucleus, translocation	2.52E-03
41	GO:0007264: small GTPase mediated signal transduction	2.60E-03
42	GO:0010583: response to cyclopentenone	2.60E-03
43	GO:0009828: plant-type cell wall loosening	2.94E-03
44	GO:0030154: cell differentiation	3.00E-03
45	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.03E-03
46	GO:0010077: maintenance of inflorescence meristem identity	3.03E-03
47	GO:2000067: regulation of root morphogenesis	3.03E-03
48	GO:0010076: maintenance of floral meristem identity	3.03E-03
49	GO:0017148: negative regulation of translation	3.03E-03
50	GO:0009554: megasporogenesis	3.03E-03
51	GO:0010555: response to mannitol	3.03E-03
52	GO:0050829: defense response to Gram-negative bacterium	3.58E-03
53	GO:0006400: tRNA modification	3.58E-03
54	GO:0051510: regulation of unidimensional cell growth	3.58E-03
55	GO:0009751: response to salicylic acid	4.01E-03
56	GO:0052543: callose deposition in cell wall	4.15E-03
57	GO:0045010: actin nucleation	4.15E-03
58	GO:0031540: regulation of anthocyanin biosynthetic process	4.15E-03
59	GO:0006468: protein phosphorylation	4.38E-03
60	GO:0009753: response to jasmonic acid	4.56E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	4.74E-03
62	GO:0051865: protein autoubiquitination	5.37E-03
63	GO:0009056: catabolic process	5.37E-03
64	GO:0000902: cell morphogenesis	5.37E-03
65	GO:0009739: response to gibberellin	5.39E-03
66	GO:0016051: carbohydrate biosynthetic process	5.79E-03
67	GO:0009638: phototropism	6.03E-03
68	GO:0010192: mucilage biosynthetic process	6.71E-03
69	GO:0043069: negative regulation of programmed cell death	6.71E-03
70	GO:0000038: very long-chain fatty acid metabolic process	7.43E-03
71	GO:0009698: phenylpropanoid metabolic process	7.43E-03
72	GO:0000272: polysaccharide catabolic process	7.43E-03
73	GO:0009750: response to fructose	7.43E-03
74	GO:0009826: unidimensional cell growth	7.77E-03
75	GO:0016024: CDP-diacylglycerol biosynthetic process	8.17E-03
76	GO:0010582: floral meristem determinacy	8.17E-03
77	GO:0016925: protein sumoylation	8.17E-03
78	GO:0018107: peptidyl-threonine phosphorylation	8.93E-03
79	GO:0010540: basipetal auxin transport	9.72E-03
80	GO:0048768: root hair cell tip growth	9.72E-03
81	GO:0034605: cellular response to heat	9.72E-03
82	GO:0010143: cutin biosynthetic process	9.72E-03
83	GO:0002237: response to molecule of bacterial origin	9.72E-03
84	GO:0009969: xyloglucan biosynthetic process	1.05E-02
85	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.12E-02
86	GO:0010200: response to chitin	1.12E-02
87	GO:0009833: plant-type primary cell wall biogenesis	1.14E-02
88	GO:0006487: protein N-linked glycosylation	1.22E-02
89	GO:0005992: trehalose biosynthetic process	1.22E-02
90	GO:0019953: sexual reproduction	1.31E-02
91	GO:0010017: red or far-red light signaling pathway	1.50E-02
92	GO:0040007: growth	1.59E-02
93	GO:0010584: pollen exine formation	1.69E-02
94	GO:0019722: calcium-mediated signaling	1.69E-02
95	GO:0042127: regulation of cell proliferation	1.69E-02
96	GO:0016117: carotenoid biosynthetic process	1.79E-02
97	GO:0048653: anther development	1.89E-02
98	GO:0000226: microtubule cytoskeleton organization	1.89E-02
99	GO:0009958: positive gravitropism	1.99E-02
100	GO:0009791: post-embryonic development	2.20E-02
101	GO:0009749: response to glucose	2.20E-02
102	GO:0002229: defense response to oomycetes	2.31E-02
103	GO:0006635: fatty acid beta-oxidation	2.31E-02
104	GO:0040008: regulation of growth	2.38E-02
105	GO:1901657: glycosyl compound metabolic process	2.54E-02
106	GO:0019760: glucosinolate metabolic process	2.65E-02
107	GO:0007267: cell-cell signaling	2.77E-02
108	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.13E-02
109	GO:0016311: dephosphorylation	3.50E-02
110	GO:0030244: cellulose biosynthetic process	3.63E-02
111	GO:0048767: root hair elongation	3.76E-02
112	GO:0009832: plant-type cell wall biogenesis	3.76E-02
113	GO:0010218: response to far red light	3.89E-02
114	GO:0007568: aging	4.03E-02
115	GO:0010119: regulation of stomatal movement	4.03E-02
116	GO:0009860: pollen tube growth	4.14E-02
117	GO:0045893: positive regulation of transcription, DNA-templated	4.27E-02
118	GO:0009637: response to blue light	4.30E-02
119	GO:0009723: response to ethylene	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0045552: dihydrokaempferol 4-reductase activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity	0.00E+00
6	GO:0047890: flavanone 4-reductase activity	0.00E+00
7	GO:0045486: naringenin 3-dioxygenase activity	0.00E+00
8	GO:0045430: chalcone isomerase activity	3.85E-05
9	GO:0035252: UDP-xylosyltransferase activity	9.03E-05
10	GO:0016757: transferase activity, transferring glycosyl groups	1.34E-04
11	GO:0080132: fatty acid alpha-hydroxylase activity	2.34E-04
12	GO:0010313: phytochrome binding	2.34E-04
13	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.20E-04
14	GO:0010280: UDP-L-rhamnose synthase activity	5.20E-04
15	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.20E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	5.20E-04
17	GO:0010291: carotene beta-ring hydroxylase activity	5.20E-04
18	GO:0001664: G-protein coupled receptor binding	8.44E-04
19	GO:0031683: G-protein beta/gamma-subunit complex binding	8.44E-04
20	GO:0031418: L-ascorbic acid binding	1.01E-03
21	GO:0001872: (1->3)-beta-D-glucan binding	1.20E-03
22	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.20E-03
23	GO:0048027: mRNA 5'-UTR binding	1.20E-03
24	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.20E-03
25	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.33E-03
26	GO:0046982: protein heterodimerization activity	1.58E-03
27	GO:0050378: UDP-glucuronate 4-epimerase activity	1.61E-03
28	GO:0045431: flavonol synthase activity	2.05E-03
29	GO:0031386: protein tag	2.05E-03
30	GO:0019901: protein kinase binding	2.27E-03
31	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.43E-03
32	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.52E-03
33	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.52E-03
34	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.52E-03
35	GO:0016759: cellulose synthase activity	2.94E-03
36	GO:0016758: transferase activity, transferring hexosyl groups	3.00E-03
37	GO:0016161: beta-amylase activity	3.03E-03
38	GO:0004674: protein serine/threonine kinase activity	3.41E-03
39	GO:0016621: cinnamoyl-CoA reductase activity	3.58E-03
40	GO:0019899: enzyme binding	3.58E-03
41	GO:0003924: GTPase activity	4.10E-03
42	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.13E-03
43	GO:0030247: polysaccharide binding	4.13E-03
44	GO:0008271: secondary active sulfate transmembrane transporter activity	4.74E-03
45	GO:0016207: 4-coumarate-CoA ligase activity	5.37E-03
46	GO:0004805: trehalose-phosphatase activity	6.71E-03
47	GO:0008327: methyl-CpG binding	7.43E-03
48	GO:0015116: sulfate transmembrane transporter activity	8.17E-03
49	GO:0044212: transcription regulatory region DNA binding	8.64E-03
50	GO:0043565: sequence-specific DNA binding	9.70E-03
51	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.72E-03
52	GO:0052689: carboxylic ester hydrolase activity	1.22E-02
53	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.31E-02
54	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.31E-02
55	GO:0004176: ATP-dependent peptidase activity	1.40E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.49E-02
57	GO:0016760: cellulose synthase (UDP-forming) activity	1.59E-02
58	GO:0004672: protein kinase activity	1.68E-02
59	GO:0005525: GTP binding	2.07E-02
60	GO:0016853: isomerase activity	2.10E-02
61	GO:0050662: coenzyme binding	2.10E-02
62	GO:0004518: nuclease activity	2.42E-02
63	GO:0051015: actin filament binding	2.54E-02
64	GO:0016791: phosphatase activity	2.65E-02
65	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.77E-02
66	GO:0008237: metallopeptidase activity	2.77E-02
67	GO:0005200: structural constituent of cytoskeleton	2.77E-02
68	GO:0042802: identical protein binding	3.16E-02
69	GO:0008375: acetylglucosaminyltransferase activity	3.25E-02
70	GO:0102483: scopolin beta-glucosidase activity	3.38E-02
71	GO:0003677: DNA binding	3.41E-02
72	GO:0004222: metalloendopeptidase activity	3.89E-02
73	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.89E-02
74	GO:0016788: hydrolase activity, acting on ester bonds	3.92E-02
75	GO:0016491: oxidoreductase activity	4.19E-02
76	GO:0008422: beta-glucosidase activity	4.57E-02
77	GO:0016740: transferase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	1.78E-06
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.29E-06
3	GO:0009505: plant-type cell wall	1.41E-05
4	GO:0046658: anchored component of plasma membrane	2.31E-04
5	GO:0005794: Golgi apparatus	3.46E-04
6	GO:0000786: nucleosome	7.10E-04
7	GO:0010330: cellulose synthase complex	8.44E-04
8	GO:0000139: Golgi membrane	1.39E-03
9	GO:0009506: plasmodesma	1.56E-03
10	GO:0010369: chromocenter	3.03E-03
11	GO:0005618: cell wall	5.36E-03
12	GO:0005886: plasma membrane	1.04E-02
13	GO:0016021: integral component of membrane	1.94E-02
14	GO:0005802: trans-Golgi network	1.99E-02
15	GO:0009705: plant-type vacuole membrane	2.49E-02
16	GO:0032580: Golgi cisterna membrane	2.65E-02
17	GO:0005615: extracellular space	2.79E-02
18	GO:0005576: extracellular region	2.98E-02