co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
2	GO:0046677: response to antibiotic	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
8	GO:0070584: mitochondrion morphogenesis	0.00E+00
9	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
10	GO:0015979: photosynthesis	5.32E-17
11	GO:0015995: chlorophyll biosynthetic process	3.40E-09
12	GO:0009768: photosynthesis, light harvesting in photosystem I	3.86E-09
13	GO:0018298: protein-chromophore linkage	8.80E-06
14	GO:0009769: photosynthesis, light harvesting in photosystem II	6.38E-05
15	GO:0006824: cobalt ion transport	1.27E-04
16	GO:0006949: syncytium formation	1.83E-04
17	GO:0010119: regulation of stomatal movement	2.22E-04
18	GO:0034755: iron ion transmembrane transport	2.94E-04
19	GO:0071497: cellular response to freezing	2.94E-04
20	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.94E-04
21	GO:0051262: protein tetramerization	2.94E-04
22	GO:0010114: response to red light	3.52E-04
23	GO:0035436: triose phosphate transmembrane transport	4.86E-04
24	GO:0055114: oxidation-reduction process	5.42E-04
25	GO:0044211: CTP salvage	6.95E-04
26	GO:0050482: arachidonic acid secretion	6.95E-04
27	GO:0010600: regulation of auxin biosynthetic process	9.21E-04
28	GO:0030007: cellular potassium ion homeostasis	9.21E-04
29	GO:0015713: phosphoglycerate transport	9.21E-04
30	GO:0044206: UMP salvage	9.21E-04
31	GO:0030104: water homeostasis	9.21E-04
32	GO:0042938: dipeptide transport	9.21E-04
33	GO:1901141: regulation of lignin biosynthetic process	9.21E-04
34	GO:2000306: positive regulation of photomorphogenesis	9.21E-04
35	GO:0034052: positive regulation of plant-type hypersensitive response	1.16E-03
36	GO:0043097: pyrimidine nucleoside salvage	1.16E-03
37	GO:0009828: plant-type cell wall loosening	1.28E-03
38	GO:0045962: positive regulation of development, heterochronic	1.43E-03
39	GO:0006206: pyrimidine nucleobase metabolic process	1.43E-03
40	GO:0009635: response to herbicide	1.43E-03
41	GO:0009643: photosynthetic acclimation	1.43E-03
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.43E-03
43	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.71E-03
44	GO:0010189: vitamin E biosynthetic process	1.71E-03
45	GO:0071470: cellular response to osmotic stress	1.71E-03
46	GO:0010196: nonphotochemical quenching	2.01E-03
47	GO:0050829: defense response to Gram-negative bacterium	2.01E-03
48	GO:0009645: response to low light intensity stimulus	2.01E-03
49	GO:0010161: red light signaling pathway	2.01E-03
50	GO:0010218: response to far red light	2.17E-03
51	GO:0010928: regulation of auxin mediated signaling pathway	2.32E-03
52	GO:0009642: response to light intensity	2.32E-03
53	GO:0043068: positive regulation of programmed cell death	2.32E-03
54	GO:0009704: de-etiolation	2.32E-03
55	GO:0006644: phospholipid metabolic process	2.32E-03
56	GO:0009637: response to blue light	2.48E-03
57	GO:0034599: cellular response to oxidative stress	2.59E-03
58	GO:0007186: G-protein coupled receptor signaling pathway	2.65E-03
59	GO:0048507: meristem development	3.00E-03
60	GO:0010206: photosystem II repair	3.00E-03
61	GO:0034765: regulation of ion transmembrane transport	3.00E-03
62	GO:0090333: regulation of stomatal closure	3.00E-03
63	GO:0009723: response to ethylene	3.30E-03
64	GO:1900865: chloroplast RNA modification	3.36E-03
65	GO:0042761: very long-chain fatty acid biosynthetic process	3.36E-03
66	GO:0006779: porphyrin-containing compound biosynthetic process	3.36E-03
67	GO:0009644: response to high light intensity	3.45E-03
68	GO:0006782: protoporphyrinogen IX biosynthetic process	3.73E-03
69	GO:0009664: plant-type cell wall organization	3.99E-03
70	GO:0009698: phenylpropanoid metabolic process	4.12E-03
71	GO:0009773: photosynthetic electron transport in photosystem I	4.12E-03
72	GO:0043085: positive regulation of catalytic activity	4.12E-03
73	GO:0018119: peptidyl-cysteine S-nitrosylation	4.12E-03
74	GO:0030148: sphingolipid biosynthetic process	4.12E-03
75	GO:0015706: nitrate transport	4.52E-03
76	GO:0018107: peptidyl-threonine phosphorylation	4.93E-03
77	GO:0009767: photosynthetic electron transport chain	4.93E-03
78	GO:0043086: negative regulation of catalytic activity	5.06E-03
79	GO:0006636: unsaturated fatty acid biosynthetic process	6.25E-03
80	GO:0006289: nucleotide-excision repair	6.71E-03
81	GO:0006874: cellular calcium ion homeostasis	7.19E-03
82	GO:0007017: microtubule-based process	7.19E-03
83	GO:0051260: protein homooligomerization	7.68E-03
84	GO:0009269: response to desiccation	7.68E-03
85	GO:0009814: defense response, incompatible interaction	8.18E-03
86	GO:0010017: red or far-red light signaling pathway	8.18E-03
87	GO:0071215: cellular response to abscisic acid stimulus	8.69E-03
88	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.69E-03
89	GO:0070417: cellular response to cold	9.75E-03
90	GO:0010305: leaf vascular tissue pattern formation	1.09E-02
91	GO:0006662: glycerol ether metabolic process	1.09E-02
92	GO:0009735: response to cytokinin	1.09E-02
93	GO:0007018: microtubule-based movement	1.14E-02
94	GO:0006814: sodium ion transport	1.14E-02
95	GO:0009416: response to light stimulus	1.23E-02
96	GO:0010193: response to ozone	1.26E-02
97	GO:0071805: potassium ion transmembrane transport	1.50E-02
98	GO:0009826: unidimensional cell growth	1.57E-02
99	GO:0016126: sterol biosynthetic process	1.63E-02
100	GO:0010029: regulation of seed germination	1.70E-02
101	GO:0016311: dephosphorylation	1.90E-02
102	GO:0006811: ion transport	2.11E-02
103	GO:0009631: cold acclimation	2.19E-02
104	GO:0007568: aging	2.19E-02
105	GO:0009910: negative regulation of flower development	2.19E-02
106	GO:0006865: amino acid transport	2.26E-02
107	GO:0045454: cell redox homeostasis	2.43E-02
108	GO:0009640: photomorphogenesis	2.80E-02
109	GO:0051707: response to other organism	2.80E-02
110	GO:0006629: lipid metabolic process	2.99E-02
111	GO:0009965: leaf morphogenesis	3.04E-02
112	GO:0006812: cation transport	3.29E-02
113	GO:0042538: hyperosmotic salinity response	3.29E-02
114	GO:0009585: red, far-red light phototransduction	3.46E-02
115	GO:0010224: response to UV-B	3.54E-02
116	GO:0006857: oligopeptide transport	3.63E-02
117	GO:0009626: plant-type hypersensitive response	4.07E-02
118	GO:0006508: proteolysis	4.11E-02
119	GO:0009409: response to cold	4.33E-02
120	GO:0042545: cell wall modification	4.35E-02
121	GO:0009624: response to nematode	4.44E-02
122	GO:0018105: peptidyl-serine phosphorylation	4.53E-02
123	GO:0005975: carbohydrate metabolic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
2	GO:0015269: calcium-activated potassium channel activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0031409: pigment binding	2.10E-07
9	GO:0016168: chlorophyll binding	5.60E-06
10	GO:0004462: lactoylglutathione lyase activity	3.36E-05
11	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.27E-04
12	GO:0052631: sphingolipid delta-8 desaturase activity	1.27E-04
13	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.27E-04
14	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.27E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.27E-04
16	GO:0005227: calcium activated cation channel activity	1.27E-04
17	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.94E-04
18	GO:0016630: protochlorophyllide reductase activity	2.94E-04
19	GO:0019172: glyoxalase III activity	2.94E-04
20	GO:0016868: intramolecular transferase activity, phosphotransferases	2.94E-04
21	GO:0016805: dipeptidase activity	4.86E-04
22	GO:0071917: triose-phosphate transmembrane transporter activity	4.86E-04
23	GO:0004180: carboxypeptidase activity	4.86E-04
24	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.86E-04
25	GO:0005216: ion channel activity	4.91E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.95E-04
27	GO:0016851: magnesium chelatase activity	6.95E-04
28	GO:0004506: squalene monooxygenase activity	9.21E-04
29	GO:0004930: G-protein coupled receptor activity	9.21E-04
30	GO:0070628: proteasome binding	9.21E-04
31	GO:0015120: phosphoglycerate transmembrane transporter activity	9.21E-04
32	GO:0004845: uracil phosphoribosyltransferase activity	9.21E-04
33	GO:0042936: dipeptide transporter activity	9.21E-04
34	GO:0004623: phospholipase A2 activity	1.16E-03
35	GO:0051538: 3 iron, 4 sulfur cluster binding	1.16E-03
36	GO:0031593: polyubiquitin binding	1.43E-03
37	GO:0015271: outward rectifier potassium channel activity	1.43E-03
38	GO:0046910: pectinesterase inhibitor activity	1.45E-03
39	GO:0005261: cation channel activity	1.71E-03
40	GO:0004849: uridine kinase activity	1.71E-03
41	GO:0004602: glutathione peroxidase activity	1.71E-03
42	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.65E-03
43	GO:0005267: potassium channel activity	2.65E-03
44	GO:0005381: iron ion transmembrane transporter activity	3.36E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	3.45E-03
46	GO:0008047: enzyme activator activity	3.73E-03
47	GO:0047372: acylglycerol lipase activity	4.12E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	4.93E-03
49	GO:0005315: inorganic phosphate transmembrane transporter activity	4.93E-03
50	GO:0005217: intracellular ligand-gated ion channel activity	5.80E-03
51	GO:0004970: ionotropic glutamate receptor activity	5.80E-03
52	GO:0004190: aspartic-type endopeptidase activity	5.80E-03
53	GO:0015035: protein disulfide oxidoreductase activity	6.27E-03
54	GO:0043130: ubiquitin binding	6.71E-03
55	GO:0008514: organic anion transmembrane transporter activity	9.21E-03
56	GO:0047134: protein-disulfide reductase activity	9.75E-03
57	GO:0015297: antiporter activity	1.00E-02
58	GO:0004791: thioredoxin-disulfide reductase activity	1.14E-02
59	GO:0019901: protein kinase binding	1.20E-02
60	GO:0048038: quinone binding	1.26E-02
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.38E-02
62	GO:0003684: damaged DNA binding	1.44E-02
63	GO:0005200: structural constituent of cytoskeleton	1.50E-02
64	GO:0005515: protein binding	2.08E-02
65	GO:0003993: acid phosphatase activity	2.41E-02
66	GO:0042393: histone binding	2.56E-02
67	GO:0046872: metal ion binding	2.57E-02
68	GO:0004185: serine-type carboxypeptidase activity	2.80E-02
69	GO:0005198: structural molecule activity	3.04E-02
70	GO:0015293: symporter activity	3.04E-02
71	GO:0005215: transporter activity	3.38E-02
72	GO:0003777: microtubule motor activity	3.72E-02
73	GO:0015171: amino acid transmembrane transporter activity	3.72E-02
74	GO:0045330: aspartyl esterase activity	3.72E-02
75	GO:0016491: oxidoreductase activity	4.18E-02
76	GO:0016874: ligase activity	4.26E-02
77	GO:0030599: pectinesterase activity	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	2.99E-29
3	GO:0009535: chloroplast thylakoid membrane	2.13E-25
4	GO:0009941: chloroplast envelope	1.89E-15
5	GO:0009579: thylakoid	2.32E-15
6	GO:0009507: chloroplast	2.21E-14
7	GO:0009538: photosystem I reaction center	1.91E-11
8	GO:0010287: plastoglobule	3.13E-10
9	GO:0009522: photosystem I	3.50E-10
10	GO:0009543: chloroplast thylakoid lumen	8.88E-06
11	GO:0016021: integral component of membrane	1.28E-05
12	GO:0009523: photosystem II	6.43E-05
13	GO:0016020: membrane	1.15E-04
14	GO:0009783: photosystem II antenna complex	1.27E-04
15	GO:0009570: chloroplast stroma	2.30E-04
16	GO:0030093: chloroplast photosystem I	2.94E-04
17	GO:0031977: thylakoid lumen	3.16E-04
18	GO:0030095: chloroplast photosystem II	3.20E-04
19	GO:0030076: light-harvesting complex	3.60E-04
20	GO:0010007: magnesium chelatase complex	4.86E-04
21	GO:0042651: thylakoid membrane	4.91E-04
22	GO:0009706: chloroplast inner membrane	8.05E-04
23	GO:0009517: PSII associated light-harvesting complex II	9.21E-04
24	GO:0030660: Golgi-associated vesicle membrane	9.21E-04
25	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.21E-04
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.32E-03
27	GO:0045298: tubulin complex	3.00E-03
28	GO:0005765: lysosomal membrane	4.12E-03
29	GO:0009654: photosystem II oxygen evolving complex	7.19E-03
30	GO:0031410: cytoplasmic vesicle	8.18E-03
31	GO:0005871: kinesin complex	9.75E-03
32	GO:0019898: extrinsic component of membrane	1.20E-02
33	GO:0071944: cell periphery	1.38E-02
34	GO:0005874: microtubule	1.96E-02
35	GO:0009707: chloroplast outer membrane	1.97E-02
36	GO:0031969: chloroplast membrane	2.03E-02
37	GO:0031966: mitochondrial membrane	3.29E-02
38	GO:0010008: endosome membrane	3.98E-02