co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
3	GO:0042820: vitamin B6 catabolic process	0.00E+00
4	GO:2001294: malonyl-CoA catabolic process	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	4.31E-09
7	GO:0006810: transport	1.26E-08
8	GO:0015979: photosynthesis	1.45E-06
9	GO:0006633: fatty acid biosynthetic process	1.28E-05
10	GO:0000038: very long-chain fatty acid metabolic process	2.28E-05
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.34E-05
12	GO:0010037: response to carbon dioxide	4.26E-05
13	GO:0015976: carbon utilization	4.26E-05
14	GO:0006183: GTP biosynthetic process	4.26E-05
15	GO:2000122: negative regulation of stomatal complex development	4.26E-05
16	GO:0006833: water transport	6.20E-05
17	GO:0016120: carotene biosynthetic process	6.78E-05
18	GO:0042335: cuticle development	1.82E-04
19	GO:0034220: ion transmembrane transport	1.82E-04
20	GO:0071555: cell wall organization	2.32E-04
21	GO:0030974: thiamine pyrophosphate transport	2.48E-04
22	GO:0046520: sphingoid biosynthetic process	2.48E-04
23	GO:0051775: response to redox state	2.48E-04
24	GO:0071277: cellular response to calcium ion	2.48E-04
25	GO:0033481: galacturonate biosynthetic process	2.48E-04
26	GO:1902458: positive regulation of stomatal opening	2.48E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	2.48E-04
28	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.48E-04
29	GO:0051180: vitamin transport	2.48E-04
30	GO:0009443: pyridoxal 5'-phosphate salvage	2.48E-04
31	GO:0010205: photoinhibition	4.05E-04
32	GO:0010411: xyloglucan metabolic process	5.44E-04
33	GO:0010115: regulation of abscisic acid biosynthetic process	5.49E-04
34	GO:0015893: drug transport	5.49E-04
35	GO:0097054: L-glutamate biosynthetic process	5.49E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.49E-04
37	GO:0010024: phytochromobilin biosynthetic process	5.49E-04
38	GO:0018298: protein-chromophore linkage	6.20E-04
39	GO:0009416: response to light stimulus	7.44E-04
40	GO:0055114: oxidation-reduction process	8.38E-04
41	GO:0006788: heme oxidation	8.92E-04
42	GO:0006518: peptide metabolic process	8.92E-04
43	GO:0006753: nucleoside phosphate metabolic process	8.92E-04
44	GO:0015714: phosphoenolpyruvate transport	8.92E-04
45	GO:0010025: wax biosynthetic process	9.89E-04
46	GO:0006636: unsaturated fatty acid biosynthetic process	9.89E-04
47	GO:0009768: photosynthesis, light harvesting in photosystem I	1.20E-03
48	GO:0042546: cell wall biogenesis	1.20E-03
49	GO:0006165: nucleoside diphosphate phosphorylation	1.27E-03
50	GO:0006228: UTP biosynthetic process	1.27E-03
51	GO:0006168: adenine salvage	1.27E-03
52	GO:0006166: purine ribonucleoside salvage	1.27E-03
53	GO:0006107: oxaloacetate metabolic process	1.27E-03
54	GO:0006241: CTP biosynthetic process	1.27E-03
55	GO:0080170: hydrogen peroxide transmembrane transport	1.27E-03
56	GO:0006537: glutamate biosynthetic process	1.27E-03
57	GO:0009409: response to cold	1.68E-03
58	GO:0031122: cytoplasmic microtubule organization	1.70E-03
59	GO:0015713: phosphoglycerate transport	1.70E-03
60	GO:0006734: NADH metabolic process	1.70E-03
61	GO:0019676: ammonia assimilation cycle	1.70E-03
62	GO:0045727: positive regulation of translation	1.70E-03
63	GO:0010182: sugar mediated signaling pathway	2.15E-03
64	GO:0006656: phosphatidylcholine biosynthetic process	2.17E-03
65	GO:0006564: L-serine biosynthetic process	2.17E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	2.17E-03
67	GO:0006461: protein complex assembly	2.17E-03
68	GO:0044209: AMP salvage	2.17E-03
69	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.67E-03
70	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.67E-03
71	GO:0006596: polyamine biosynthetic process	2.67E-03
72	GO:0000741: karyogamy	2.67E-03
73	GO:0006561: proline biosynthetic process	2.67E-03
74	GO:0048759: xylem vessel member cell differentiation	2.67E-03
75	GO:0010405: arabinogalactan protein metabolic process	2.67E-03
76	GO:0042549: photosystem II stabilization	2.67E-03
77	GO:0009913: epidermal cell differentiation	2.67E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	3.21E-03
79	GO:0015937: coenzyme A biosynthetic process	3.79E-03
80	GO:1900057: positive regulation of leaf senescence	3.79E-03
81	GO:0050829: defense response to Gram-negative bacterium	3.79E-03
82	GO:0009645: response to low light intensity stimulus	3.79E-03
83	GO:0010444: guard mother cell differentiation	3.79E-03
84	GO:0009395: phospholipid catabolic process	3.79E-03
85	GO:0030497: fatty acid elongation	3.79E-03
86	GO:0030091: protein repair	4.39E-03
87	GO:0042255: ribosome assembly	4.39E-03
88	GO:0009704: de-etiolation	4.39E-03
89	GO:2000070: regulation of response to water deprivation	4.39E-03
90	GO:0007155: cell adhesion	4.39E-03
91	GO:0008610: lipid biosynthetic process	4.39E-03
92	GO:0055085: transmembrane transport	4.44E-03
93	GO:0016042: lipid catabolic process	4.47E-03
94	GO:0009657: plastid organization	5.03E-03
95	GO:0032544: plastid translation	5.03E-03
96	GO:0015996: chlorophyll catabolic process	5.03E-03
97	GO:0009827: plant-type cell wall modification	5.03E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	5.03E-03
99	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.70E-03
100	GO:0090333: regulation of stomatal closure	5.70E-03
101	GO:0010119: regulation of stomatal movement	5.75E-03
102	GO:0009638: phototropism	6.40E-03
103	GO:0005975: carbohydrate metabolic process	6.80E-03
104	GO:0019538: protein metabolic process	7.12E-03
105	GO:0009688: abscisic acid biosynthetic process	7.12E-03
106	GO:0043069: negative regulation of programmed cell death	7.12E-03
107	GO:0006839: mitochondrial transport	7.18E-03
108	GO:0009750: response to fructose	7.88E-03
109	GO:0009744: response to sucrose	8.13E-03
110	GO:0045037: protein import into chloroplast stroma	8.66E-03
111	GO:0009644: response to high light intensity	8.79E-03
112	GO:0009658: chloroplast organization	9.09E-03
113	GO:0010628: positive regulation of gene expression	9.47E-03
114	GO:0006108: malate metabolic process	9.47E-03
115	GO:0006006: glucose metabolic process	9.47E-03
116	GO:0009725: response to hormone	9.47E-03
117	GO:0009414: response to water deprivation	9.62E-03
118	GO:0010207: photosystem II assembly	1.03E-02
119	GO:0019253: reductive pentose-phosphate cycle	1.03E-02
120	GO:0010143: cutin biosynthetic process	1.03E-02
121	GO:0071732: cellular response to nitric oxide	1.12E-02
122	GO:0009225: nucleotide-sugar metabolic process	1.12E-02
123	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.25E-02
124	GO:0006096: glycolytic process	1.30E-02
125	GO:0007017: microtubule-based process	1.39E-02
126	GO:0031408: oxylipin biosynthetic process	1.49E-02
127	GO:0016998: cell wall macromolecule catabolic process	1.49E-02
128	GO:0030245: cellulose catabolic process	1.59E-02
129	GO:0006869: lipid transport	1.69E-02
130	GO:0071369: cellular response to ethylene stimulus	1.69E-02
131	GO:0019722: calcium-mediated signaling	1.79E-02
132	GO:0042127: regulation of cell proliferation	1.79E-02
133	GO:0032259: methylation	1.85E-02
134	GO:0016117: carotenoid biosynthetic process	1.90E-02
135	GO:0010087: phloem or xylem histogenesis	2.01E-02
136	GO:0010197: polar nucleus fusion	2.12E-02
137	GO:0045489: pectin biosynthetic process	2.12E-02
138	GO:0002229: defense response to oomycetes	2.46E-02
139	GO:0000302: response to reactive oxygen species	2.46E-02
140	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
141	GO:0032502: developmental process	2.58E-02
142	GO:0071281: cellular response to iron ion	2.70E-02
143	GO:1901657: glycosyl compound metabolic process	2.70E-02
144	GO:0007267: cell-cell signaling	2.94E-02
145	GO:0010027: thylakoid membrane organization	3.19E-02
146	GO:0016126: sterol biosynthetic process	3.19E-02
147	GO:0042128: nitrate assimilation	3.46E-02
148	GO:0009735: response to cytokinin	3.58E-02
149	GO:0030244: cellulose biosynthetic process	3.86E-02
150	GO:0009817: defense response to fungus, incompatible interaction	3.86E-02
151	GO:0000160: phosphorelay signal transduction system	4.00E-02
152	GO:0009826: unidimensional cell growth	4.03E-02
153	GO:0009407: toxin catabolic process	4.14E-02
154	GO:0010218: response to far red light	4.14E-02
155	GO:0009834: plant-type secondary cell wall biogenesis	4.14E-02
156	GO:0009631: cold acclimation	4.28E-02
157	GO:0009637: response to blue light	4.56E-02
158	GO:0009853: photorespiration	4.56E-02
159	GO:0034599: cellular response to oxidative stress	4.71E-02
160	GO:0006099: tricarboxylic acid cycle	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
5	GO:1990534: thermospermine oxidase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
10	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.26E-05
12	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.20E-05
13	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.20E-05
14	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.20E-05
15	GO:0008568: microtubule-severing ATPase activity	2.48E-04
16	GO:0045485: omega-6 fatty acid desaturase activity	2.48E-04
17	GO:0016768: spermine synthase activity	2.48E-04
18	GO:0008746: NAD(P)+ transhydrogenase activity	2.48E-04
19	GO:0016041: glutamate synthase (ferredoxin) activity	2.48E-04
20	GO:0004328: formamidase activity	2.48E-04
21	GO:0000170: sphingosine hydroxylase activity	2.48E-04
22	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.48E-04
23	GO:0090422: thiamine pyrophosphate transporter activity	2.48E-04
24	GO:0080132: fatty acid alpha-hydroxylase activity	2.48E-04
25	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.48E-04
26	GO:0010945: CoA pyrophosphatase activity	2.48E-04
27	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.71E-04
28	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.31E-04
29	GO:0015250: water channel activity	4.41E-04
30	GO:0016168: chlorophyll binding	4.75E-04
31	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.44E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.49E-04
33	GO:0008967: phosphoglycolate phosphatase activity	5.49E-04
34	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.49E-04
35	GO:0004617: phosphoglycerate dehydrogenase activity	5.49E-04
36	GO:0003938: IMP dehydrogenase activity	5.49E-04
37	GO:0042284: sphingolipid delta-4 desaturase activity	5.49E-04
38	GO:0052689: carboxylic ester hydrolase activity	6.44E-04
39	GO:0004089: carbonate dehydratase activity	7.09E-04
40	GO:0004871: signal transducer activity	8.05E-04
41	GO:0070402: NADPH binding	8.92E-04
42	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.92E-04
43	GO:0050734: hydroxycinnamoyltransferase activity	8.92E-04
44	GO:0031409: pigment binding	9.89E-04
45	GO:0003999: adenine phosphoribosyltransferase activity	1.27E-03
46	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.27E-03
47	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.27E-03
48	GO:0004550: nucleoside diphosphate kinase activity	1.27E-03
49	GO:0001872: (1->3)-beta-D-glucan binding	1.27E-03
50	GO:0004506: squalene monooxygenase activity	1.70E-03
51	GO:0050378: UDP-glucuronate 4-epimerase activity	1.70E-03
52	GO:0004392: heme oxygenase (decyclizing) activity	1.70E-03
53	GO:0015120: phosphoglycerate transmembrane transporter activity	1.70E-03
54	GO:0004659: prenyltransferase activity	1.70E-03
55	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.70E-03
56	GO:0052793: pectin acetylesterase activity	1.70E-03
57	GO:0016788: hydrolase activity, acting on ester bonds	1.91E-03
58	GO:0051538: 3 iron, 4 sulfur cluster binding	2.17E-03
59	GO:0009922: fatty acid elongase activity	2.17E-03
60	GO:0048038: quinone binding	2.64E-03
61	GO:0004130: cytochrome-c peroxidase activity	2.67E-03
62	GO:0000210: NAD+ diphosphatase activity	2.67E-03
63	GO:0016688: L-ascorbate peroxidase activity	2.67E-03
64	GO:0016615: malate dehydrogenase activity	2.67E-03
65	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.67E-03
66	GO:0004629: phospholipase C activity	2.67E-03
67	GO:0051753: mannan synthase activity	3.21E-03
68	GO:0030060: L-malate dehydrogenase activity	3.21E-03
69	GO:0004435: phosphatidylinositol phospholipase C activity	3.21E-03
70	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.21E-03
71	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.21E-03
72	GO:0004033: aldo-keto reductase (NADP) activity	4.39E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.03E-03
74	GO:0016491: oxidoreductase activity	5.15E-03
75	GO:0015386: potassium:proton antiporter activity	7.88E-03
76	GO:0008081: phosphoric diester hydrolase activity	9.47E-03
77	GO:0004022: alcohol dehydrogenase (NAD) activity	9.47E-03
78	GO:0004565: beta-galactosidase activity	9.47E-03
79	GO:0051287: NAD binding	9.85E-03
80	GO:0008266: poly(U) RNA binding	1.03E-02
81	GO:0008131: primary amine oxidase activity	1.03E-02
82	GO:0008146: sulfotransferase activity	1.12E-02
83	GO:0003690: double-stranded DNA binding	1.14E-02
84	GO:0003824: catalytic activity	1.18E-02
85	GO:0005215: transporter activity	1.19E-02
86	GO:0004857: enzyme inhibitor activity	1.30E-02
87	GO:0005528: FK506 binding	1.30E-02
88	GO:0015079: potassium ion transmembrane transporter activity	1.39E-02
89	GO:0043424: protein histidine kinase binding	1.39E-02
90	GO:0030599: pectinesterase activity	1.47E-02
91	GO:0022857: transmembrane transporter activity	1.47E-02
92	GO:0016746: transferase activity, transferring acyl groups	1.61E-02
93	GO:0008810: cellulase activity	1.69E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.69E-02
95	GO:0003727: single-stranded RNA binding	1.79E-02
96	GO:0008514: organic anion transmembrane transporter activity	1.79E-02
97	GO:0019843: rRNA binding	1.96E-02
98	GO:0050662: coenzyme binding	2.23E-02
99	GO:0004872: receptor activity	2.34E-02
100	GO:0004518: nuclease activity	2.58E-02
101	GO:0015297: antiporter activity	2.59E-02
102	GO:0000156: phosphorelay response regulator activity	2.70E-02
103	GO:0005200: structural constituent of cytoskeleton	2.94E-02
104	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.94E-02
105	GO:0008289: lipid binding	2.96E-02
106	GO:0016597: amino acid binding	3.07E-02
107	GO:0016413: O-acetyltransferase activity	3.07E-02
108	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.46E-02
109	GO:0030247: polysaccharide binding	3.59E-02
110	GO:0004683: calmodulin-dependent protein kinase activity	3.59E-02
111	GO:0102483: scopolin beta-glucosidase activity	3.59E-02
112	GO:0015238: drug transmembrane transporter activity	4.00E-02
113	GO:0008168: methyltransferase activity	4.03E-02
114	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.14E-02
115	GO:0004222: metalloendopeptidase activity	4.14E-02
116	GO:0003993: acid phosphatase activity	4.71E-02
117	GO:0008422: beta-glucosidase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	1.35E-14
3	GO:0009535: chloroplast thylakoid membrane	2.22E-14
4	GO:0048046: apoplast	1.60E-10
5	GO:0009941: chloroplast envelope	1.69E-10
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.51E-10
7	GO:0009579: thylakoid	7.62E-08
8	GO:0009534: chloroplast thylakoid	7.37E-06
9	GO:0016021: integral component of membrane	3.67E-05
10	GO:0009543: chloroplast thylakoid lumen	7.91E-05
11	GO:0009782: photosystem I antenna complex	2.48E-04
12	GO:0009570: chloroplast stroma	5.37E-04
13	GO:0031969: chloroplast membrane	5.39E-04
14	GO:0030095: chloroplast photosystem II	7.98E-04
15	GO:0030076: light-harvesting complex	8.92E-04
16	GO:0009528: plastid inner membrane	8.92E-04
17	GO:0009654: photosystem II oxygen evolving complex	1.20E-03
18	GO:0015630: microtubule cytoskeleton	1.27E-03
19	GO:0009527: plastid outer membrane	1.70E-03
20	GO:0005886: plasma membrane	2.28E-03
21	GO:0005618: cell wall	2.44E-03
22	GO:0009523: photosystem II	2.47E-03
23	GO:0019898: extrinsic component of membrane	2.47E-03
24	GO:0010287: plastoglobule	3.23E-03
25	GO:0010319: stromule	3.40E-03
26	GO:0009533: chloroplast stromal thylakoid	3.79E-03
27	GO:0008180: COP9 signalosome	5.70E-03
28	GO:0046658: anchored component of plasma membrane	7.45E-03
29	GO:0016020: membrane	7.48E-03
30	GO:0005758: mitochondrial intermembrane space	1.30E-02
31	GO:0042651: thylakoid membrane	1.39E-02
32	GO:0009532: plastid stroma	1.49E-02
33	GO:0009706: chloroplast inner membrane	1.57E-02
34	GO:0005576: extracellular region	1.58E-02
35	GO:0005789: endoplasmic reticulum membrane	2.08E-02
36	GO:0031225: anchored component of membrane	2.17E-02
37	GO:0009522: photosystem I	2.23E-02
38	GO:0032580: Golgi cisterna membrane	2.82E-02
39	GO:0005887: integral component of plasma membrane	2.87E-02
40	GO:0005778: peroxisomal membrane	2.94E-02
41	GO:0019005: SCF ubiquitin ligase complex	3.86E-02
42	GO:0009707: chloroplast outer membrane	3.86E-02
43	GO:0009505: plant-type cell wall	4.41E-02