co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0008614: pyridoxine metabolic process	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0006105: succinate metabolic process	0.00E+00
5	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
6	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
7	GO:0019484: beta-alanine catabolic process	0.00E+00
8	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
9	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
10	GO:0006979: response to oxidative stress	4.11E-05
11	GO:0035266: meristem growth	1.04E-04
12	GO:0009450: gamma-aminobutyric acid catabolic process	1.04E-04
13	GO:0007292: female gamete generation	1.04E-04
14	GO:0019628: urate catabolic process	1.04E-04
15	GO:0000303: response to superoxide	1.04E-04
16	GO:0009865: pollen tube adhesion	1.04E-04
17	GO:0006540: glutamate decarboxylation to succinate	1.04E-04
18	GO:0006144: purine nucleobase metabolic process	1.04E-04
19	GO:0048364: root development	1.19E-04
20	GO:0048829: root cap development	1.37E-04
21	GO:0010102: lateral root morphogenesis	2.14E-04
22	GO:0006541: glutamine metabolic process	2.43E-04
23	GO:0010033: response to organic substance	2.44E-04
24	GO:0050684: regulation of mRNA processing	2.44E-04
25	GO:0042819: vitamin B6 biosynthetic process	2.44E-04
26	GO:0030010: establishment of cell polarity	2.44E-04
27	GO:0051788: response to misfolded protein	2.44E-04
28	GO:0051258: protein polymerization	2.44E-04
29	GO:0010353: response to trehalose	2.44E-04
30	GO:0060968: regulation of gene silencing	4.05E-04
31	GO:0032784: regulation of DNA-templated transcription, elongation	4.05E-04
32	GO:0033523: histone H2B ubiquitination	4.05E-04
33	GO:0048367: shoot system development	4.71E-04
34	GO:0048194: Golgi vesicle budding	5.82E-04
35	GO:0006020: inositol metabolic process	5.82E-04
36	GO:0006809: nitric oxide biosynthetic process	5.82E-04
37	GO:0009399: nitrogen fixation	5.82E-04
38	GO:0042823: pyridoxal phosphate biosynthetic process	5.82E-04
39	GO:0009650: UV protection	5.82E-04
40	GO:0008615: pyridoxine biosynthetic process	5.82E-04
41	GO:0046686: response to cadmium ion	6.36E-04
42	GO:0033320: UDP-D-xylose biosynthetic process	7.73E-04
43	GO:0006536: glutamate metabolic process	7.73E-04
44	GO:0006646: phosphatidylethanolamine biosynthetic process	7.73E-04
45	GO:0009845: seed germination	8.35E-04
46	GO:0009790: embryo development	9.16E-04
47	GO:0043097: pyrimidine nucleoside salvage	9.77E-04
48	GO:0098719: sodium ion import across plasma membrane	9.77E-04
49	GO:0005513: detection of calcium ion	9.77E-04
50	GO:0048827: phyllome development	1.19E-03
51	GO:0048232: male gamete generation	1.19E-03
52	GO:0043248: proteasome assembly	1.19E-03
53	GO:0042732: D-xylose metabolic process	1.19E-03
54	GO:0010358: leaf shaping	1.19E-03
55	GO:0006206: pyrimidine nucleobase metabolic process	1.19E-03
56	GO:0006014: D-ribose metabolic process	1.19E-03
57	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.19E-03
58	GO:0009612: response to mechanical stimulus	1.43E-03
59	GO:0010311: lateral root formation	1.58E-03
60	GO:0006499: N-terminal protein myristoylation	1.66E-03
61	GO:0006401: RNA catabolic process	1.67E-03
62	GO:0009610: response to symbiotic fungus	1.67E-03
63	GO:0098869: cellular oxidant detoxification	1.67E-03
64	GO:0046470: phosphatidylcholine metabolic process	1.67E-03
65	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.67E-03
66	GO:0045087: innate immune response	1.90E-03
67	GO:0006491: N-glycan processing	1.93E-03
68	GO:0006605: protein targeting	1.93E-03
69	GO:0009415: response to water	1.93E-03
70	GO:0010078: maintenance of root meristem identity	1.93E-03
71	GO:0006970: response to osmotic stress	2.13E-03
72	GO:0006972: hyperosmotic response	2.21E-03
73	GO:0006002: fructose 6-phosphate metabolic process	2.21E-03
74	GO:0009880: embryonic pattern specification	2.21E-03
75	GO:0048193: Golgi vesicle transport	2.21E-03
76	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.49E-03
77	GO:0051453: regulation of intracellular pH	2.79E-03
78	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.79E-03
79	GO:0042761: very long-chain fatty acid biosynthetic process	2.79E-03
80	GO:0010015: root morphogenesis	3.42E-03
81	GO:0071365: cellular response to auxin stimulus	3.75E-03
82	GO:0012501: programmed cell death	3.75E-03
83	GO:0005983: starch catabolic process	3.75E-03
84	GO:0048467: gynoecium development	4.44E-03
85	GO:0009933: meristem structural organization	4.44E-03
86	GO:0018105: peptidyl-serine phosphorylation	4.77E-03
87	GO:0009225: nucleotide-sugar metabolic process	4.80E-03
88	GO:0007031: peroxisome organization	4.80E-03
89	GO:0005985: sucrose metabolic process	4.80E-03
90	GO:0090351: seedling development	4.80E-03
91	GO:0000162: tryptophan biosynthetic process	5.18E-03
92	GO:0034976: response to endoplasmic reticulum stress	5.18E-03
93	GO:2000377: regulation of reactive oxygen species metabolic process	5.56E-03
94	GO:0009695: jasmonic acid biosynthetic process	5.95E-03
95	GO:0061077: chaperone-mediated protein folding	6.35E-03
96	GO:0030433: ubiquitin-dependent ERAD pathway	6.76E-03
97	GO:0006633: fatty acid biosynthetic process	7.28E-03
98	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.05E-03
99	GO:0009738: abscisic acid-activated signaling pathway	8.29E-03
100	GO:0000413: protein peptidyl-prolyl isomerization	8.49E-03
101	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.95E-03
102	GO:0010154: fruit development	8.95E-03
103	GO:0006814: sodium ion transport	9.42E-03
104	GO:0010183: pollen tube guidance	9.90E-03
105	GO:0019252: starch biosynthetic process	9.90E-03
106	GO:0008654: phospholipid biosynthetic process	9.90E-03
107	GO:0010193: response to ozone	1.04E-02
108	GO:0006891: intra-Golgi vesicle-mediated transport	1.04E-02
109	GO:0006635: fatty acid beta-oxidation	1.04E-02
110	GO:0016032: viral process	1.09E-02
111	GO:0006464: cellular protein modification process	1.19E-02
112	GO:0006914: autophagy	1.19E-02
113	GO:0071805: potassium ion transmembrane transport	1.24E-02
114	GO:0006511: ubiquitin-dependent protein catabolic process	1.28E-02
115	GO:0051607: defense response to virus	1.29E-02
116	GO:0001666: response to hypoxia	1.35E-02
117	GO:0010029: regulation of seed germination	1.40E-02
118	GO:0009816: defense response to bacterium, incompatible interaction	1.40E-02
119	GO:0048573: photoperiodism, flowering	1.51E-02
120	GO:0006950: response to stress	1.51E-02
121	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.59E-02
122	GO:0009737: response to abscisic acid	1.60E-02
123	GO:0046777: protein autophosphorylation	1.65E-02
124	GO:0009631: cold acclimation	1.80E-02
125	GO:0048527: lateral root development	1.80E-02
126	GO:0010119: regulation of stomatal movement	1.80E-02
127	GO:0045454: cell redox homeostasis	1.85E-02
128	GO:0009867: jasmonic acid mediated signaling pathway	1.92E-02
129	GO:0016051: carbohydrate biosynthetic process	1.92E-02
130	GO:0006631: fatty acid metabolic process	2.17E-02
131	GO:0000209: protein polyubiquitination	2.37E-02
132	GO:0009965: leaf morphogenesis	2.50E-02
133	GO:0031347: regulation of defense response	2.64E-02
134	GO:0006486: protein glycosylation	2.84E-02
135	GO:0009736: cytokinin-activated signaling pathway	2.84E-02
136	GO:0010224: response to UV-B	2.91E-02
137	GO:0009873: ethylene-activated signaling pathway	2.94E-02
138	GO:0006417: regulation of translation	3.06E-02
139	GO:0009651: response to salt stress	3.13E-02
140	GO:0006096: glycolytic process	3.20E-02
141	GO:0009626: plant-type hypersensitive response	3.35E-02
142	GO:0016569: covalent chromatin modification	3.50E-02
143	GO:0009742: brassinosteroid mediated signaling pathway	3.81E-02
144	GO:0035556: intracellular signal transduction	4.25E-02
145	GO:0009058: biosynthetic process	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0005548: phospholipid transporter activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0004846: urate oxidase activity	0.00E+00
4	GO:0004359: glutaminase activity	0.00E+00
5	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
6	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.43E-05
7	GO:0004012: phospholipid-translocating ATPase activity	3.43E-05
8	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.06E-05
9	GO:0050521: alpha-glucan, water dikinase activity	1.04E-04
10	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.04E-04
11	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.04E-04
12	GO:0003867: 4-aminobutyrate transaminase activity	1.04E-04
13	GO:0016274: protein-arginine N-methyltransferase activity	1.04E-04
14	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.14E-04
15	GO:0004609: phosphatidylserine decarboxylase activity	2.44E-04
16	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	2.44E-04
17	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	2.44E-04
18	GO:0004180: carboxypeptidase activity	4.05E-04
19	GO:0005047: signal recognition particle binding	4.05E-04
20	GO:0004383: guanylate cyclase activity	4.05E-04
21	GO:0003729: mRNA binding	5.80E-04
22	GO:0004300: enoyl-CoA hydratase activity	5.82E-04
23	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	5.82E-04
24	GO:0001653: peptide receptor activity	5.82E-04
25	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.82E-04
26	GO:0005524: ATP binding	5.82E-04
27	GO:0004165: dodecenoyl-CoA delta-isomerase activity	5.82E-04
28	GO:0004834: tryptophan synthase activity	7.73E-04
29	GO:0043015: gamma-tubulin binding	7.73E-04
30	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	9.77E-04
31	GO:0005496: steroid binding	9.77E-04
32	GO:0004356: glutamate-ammonia ligase activity	9.77E-04
33	GO:0005509: calcium ion binding	1.02E-03
34	GO:0048040: UDP-glucuronate decarboxylase activity	1.19E-03
35	GO:0036402: proteasome-activating ATPase activity	1.19E-03
36	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.29E-03
37	GO:0004683: calmodulin-dependent protein kinase activity	1.36E-03
38	GO:0070403: NAD+ binding	1.43E-03
39	GO:0004747: ribokinase activity	1.43E-03
40	GO:0004849: uridine kinase activity	1.43E-03
41	GO:0004602: glutathione peroxidase activity	1.43E-03
42	GO:0004559: alpha-mannosidase activity	1.43E-03
43	GO:0005096: GTPase activator activity	1.58E-03
44	GO:0003872: 6-phosphofructokinase activity	1.67E-03
45	GO:0004620: phospholipase activity	1.67E-03
46	GO:0050897: cobalt ion binding	1.73E-03
47	GO:0008865: fructokinase activity	1.93E-03
48	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.93E-03
49	GO:0004630: phospholipase D activity	2.21E-03
50	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.21E-03
51	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.79E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-03
53	GO:0015386: potassium:proton antiporter activity	3.42E-03
54	GO:0004867: serine-type endopeptidase inhibitor activity	4.80E-03
55	GO:0017025: TBP-class protein binding	4.80E-03
56	GO:0043130: ubiquitin binding	5.56E-03
57	GO:0005528: FK506 binding	5.56E-03
58	GO:0043424: protein histidine kinase binding	5.95E-03
59	GO:0003756: protein disulfide isomerase activity	7.61E-03
60	GO:0005515: protein binding	7.89E-03
61	GO:0016853: isomerase activity	9.42E-03
62	GO:0004518: nuclease activity	1.09E-02
63	GO:0015385: sodium:proton antiporter activity	1.14E-02
64	GO:0000287: magnesium ion binding	1.22E-02
65	GO:0005516: calmodulin binding	1.45E-02
66	GO:0008236: serine-type peptidase activity	1.57E-02
67	GO:0004674: protein serine/threonine kinase activity	1.89E-02
68	GO:0043621: protein self-association	2.43E-02
69	GO:0015171: amino acid transmembrane transporter activity	3.06E-02
70	GO:0031625: ubiquitin protein ligase binding	3.06E-02
71	GO:0004672: protein kinase activity	3.41E-02
72	GO:0016887: ATPase activity	3.53E-02
73	GO:0030170: pyridoxal phosphate binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:1903600: glutaminase complex	0.00E+00
3	GO:0005783: endoplasmic reticulum	2.38E-05
4	GO:0016363: nuclear matrix	3.43E-05
5	GO:0005737: cytoplasm	2.94E-04
6	GO:0005829: cytosol	3.39E-04
7	GO:0005794: Golgi apparatus	6.67E-04
8	GO:0005945: 6-phosphofructokinase complex	9.77E-04
9	GO:0005768: endosome	9.80E-04
10	GO:0005886: plasma membrane	1.28E-03
11	GO:0030173: integral component of Golgi membrane	1.43E-03
12	GO:0031597: cytosolic proteasome complex	1.43E-03
13	GO:0031595: nuclear proteasome complex	1.67E-03
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.21E-03
15	GO:0008540: proteasome regulatory particle, base subcomplex	2.79E-03
16	GO:0005774: vacuolar membrane	3.07E-03
17	GO:0005802: trans-Golgi network	3.57E-03
18	GO:0005773: vacuole	7.09E-03
19	GO:0030136: clathrin-coated vesicle	8.05E-03
20	GO:0005789: endoplasmic reticulum membrane	9.69E-03
21	GO:0032580: Golgi cisterna membrane	1.19E-02
22	GO:0005788: endoplasmic reticulum lumen	1.40E-02
23	GO:0009506: plasmodesma	1.60E-02
24	GO:0031902: late endosome membrane	2.17E-02
25	GO:0031966: mitochondrial membrane	2.70E-02
26	GO:0000502: proteasome complex	2.84E-02
27	GO:0000139: Golgi membrane	3.09E-02
28	GO:0010008: endosome membrane	3.28E-02
29	GO:0005623: cell	4.37E-02
30	GO:0005777: peroxisome	4.62E-02