co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0000390: spliceosomal complex disassembly	0.00E+00
3	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
4	GO:0045022: early endosome to late endosome transport	0.00E+00
5	GO:0019484: beta-alanine catabolic process	0.00E+00
6	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
7	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
8	GO:0010398: xylogalacturonan metabolic process	0.00E+00
9	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
10	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
11	GO:0009819: drought recovery	1.37E-04
12	GO:0009415: response to water	1.37E-04
13	GO:0010184: cytokinin transport	1.77E-04
14	GO:0035344: hypoxanthine transport	1.77E-04
15	GO:0071366: cellular response to indolebutyric acid stimulus	1.77E-04
16	GO:0009865: pollen tube adhesion	1.77E-04
17	GO:0006540: glutamate decarboxylation to succinate	1.77E-04
18	GO:0098721: uracil import across plasma membrane	1.77E-04
19	GO:0098702: adenine import across plasma membrane	1.77E-04
20	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.77E-04
21	GO:0035266: meristem growth	1.77E-04
22	GO:0098710: guanine import across plasma membrane	1.77E-04
23	GO:0009450: gamma-aminobutyric acid catabolic process	1.77E-04
24	GO:0007292: female gamete generation	1.77E-04
25	GO:0046686: response to cadmium ion	2.07E-04
26	GO:0048829: root cap development	2.95E-04
27	GO:0006499: N-terminal protein myristoylation	3.83E-04
28	GO:0009660: amyloplast organization	4.01E-04
29	GO:0051788: response to misfolded protein	4.01E-04
30	GO:0051258: protein polymerization	4.01E-04
31	GO:0045948: positive regulation of translational initiation	4.01E-04
32	GO:0019441: tryptophan catabolic process to kynurenine	4.01E-04
33	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.01E-04
34	GO:0010033: response to organic substance	4.01E-04
35	GO:0016051: carbohydrate biosynthetic process	4.59E-04
36	GO:0009737: response to abscisic acid	4.66E-04
37	GO:0009409: response to cold	5.82E-04
38	GO:0042344: indole glucosinolate catabolic process	6.55E-04
39	GO:0061158: 3'-UTR-mediated mRNA destabilization	6.55E-04
40	GO:0033523: histone H2B ubiquitination	6.55E-04
41	GO:0030029: actin filament-based process	6.55E-04
42	GO:0060968: regulation of gene silencing	6.55E-04
43	GO:0015749: monosaccharide transport	9.34E-04
44	GO:0009650: UV protection	9.34E-04
45	GO:0009399: nitrogen fixation	9.34E-04
46	GO:0009113: purine nucleobase biosynthetic process	9.34E-04
47	GO:0006882: cellular zinc ion homeostasis	9.34E-04
48	GO:0048194: Golgi vesicle budding	9.34E-04
49	GO:0006020: inositol metabolic process	9.34E-04
50	GO:2001289: lipid X metabolic process	9.34E-04
51	GO:0006979: response to oxidative stress	1.17E-03
52	GO:0006536: glutamate metabolic process	1.24E-03
53	GO:0006878: cellular copper ion homeostasis	1.24E-03
54	GO:0006646: phosphatidylethanolamine biosynthetic process	1.24E-03
55	GO:0015743: malate transport	1.24E-03
56	GO:0033320: UDP-D-xylose biosynthetic process	1.24E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.57E-03
58	GO:0005513: detection of calcium ion	1.57E-03
59	GO:0010358: leaf shaping	1.94E-03
60	GO:0006206: pyrimidine nucleobase metabolic process	1.94E-03
61	GO:0006014: D-ribose metabolic process	1.94E-03
62	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.94E-03
63	GO:0015691: cadmium ion transport	1.94E-03
64	GO:0048827: phyllome development	1.94E-03
65	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.94E-03
66	GO:0009959: negative gravitropism	1.94E-03
67	GO:0048232: male gamete generation	1.94E-03
68	GO:0043248: proteasome assembly	1.94E-03
69	GO:0042732: D-xylose metabolic process	1.94E-03
70	GO:0006914: autophagy	2.00E-03
71	GO:0045926: negative regulation of growth	2.32E-03
72	GO:0009612: response to mechanical stimulus	2.32E-03
73	GO:0006694: steroid biosynthetic process	2.32E-03
74	GO:0048280: vesicle fusion with Golgi apparatus	2.32E-03
75	GO:0031930: mitochondria-nucleus signaling pathway	2.32E-03
76	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.74E-03
77	GO:0009396: folic acid-containing compound biosynthetic process	2.74E-03
78	GO:0006333: chromatin assembly or disassembly	2.74E-03
79	GO:0098869: cellular oxidant detoxification	2.74E-03
80	GO:0046470: phosphatidylcholine metabolic process	2.74E-03
81	GO:0009395: phospholipid catabolic process	2.74E-03
82	GO:0048573: photoperiodism, flowering	2.80E-03
83	GO:0006605: protein targeting	3.17E-03
84	GO:0010078: maintenance of root meristem identity	3.17E-03
85	GO:0010311: lateral root formation	3.25E-03
86	GO:0006367: transcription initiation from RNA polymerase II promoter	3.63E-03
87	GO:0006972: hyperosmotic response	3.63E-03
88	GO:0009821: alkaloid biosynthetic process	4.10E-03
89	GO:0046916: cellular transition metal ion homeostasis	4.10E-03
90	GO:0009051: pentose-phosphate shunt, oxidative branch	4.10E-03
91	GO:0009651: response to salt stress	4.23E-03
92	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.60E-03
93	GO:0035999: tetrahydrofolate interconversion	4.60E-03
94	GO:0006897: endocytosis	4.64E-03
95	GO:0006896: Golgi to vacuole transport	5.11E-03
96	GO:0006535: cysteine biosynthetic process from serine	5.11E-03
97	GO:0009688: abscisic acid biosynthetic process	5.11E-03
98	GO:0052544: defense response by callose deposition in cell wall	5.65E-03
99	GO:0010015: root morphogenesis	5.65E-03
100	GO:0055114: oxidation-reduction process	6.23E-03
101	GO:0010102: lateral root morphogenesis	6.78E-03
102	GO:0006006: glucose metabolic process	6.78E-03
103	GO:0016192: vesicle-mediated transport	6.92E-03
104	GO:0006541: glutamine metabolic process	7.37E-03
105	GO:0009933: meristem structural organization	7.37E-03
106	GO:0010167: response to nitrate	7.98E-03
107	GO:0005985: sucrose metabolic process	7.98E-03
108	GO:0090351: seedling development	7.98E-03
109	GO:0007033: vacuole organization	7.98E-03
110	GO:0009225: nucleotide-sugar metabolic process	7.98E-03
111	GO:0048367: shoot system development	8.28E-03
112	GO:0006886: intracellular protein transport	8.48E-03
113	GO:0006863: purine nucleobase transport	8.61E-03
114	GO:0045333: cellular respiration	9.26E-03
115	GO:0019344: cysteine biosynthetic process	9.26E-03
116	GO:0009269: response to desiccation	1.06E-02
117	GO:0048278: vesicle docking	1.06E-02
118	GO:0048364: root development	1.12E-02
119	GO:0030433: ubiquitin-dependent ERAD pathway	1.13E-02
120	GO:0031348: negative regulation of defense response	1.13E-02
121	GO:0071215: cellular response to abscisic acid stimulus	1.20E-02
122	GO:0006012: galactose metabolic process	1.20E-02
123	GO:0009845: seed germination	1.31E-02
124	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
125	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
126	GO:0000226: microtubule cytoskeleton organization	1.43E-02
127	GO:0042391: regulation of membrane potential	1.43E-02
128	GO:0000413: protein peptidyl-prolyl isomerization	1.43E-02
129	GO:0010118: stomatal movement	1.43E-02
130	GO:0015991: ATP hydrolysis coupled proton transport	1.43E-02
131	GO:0042631: cellular response to water deprivation	1.43E-02
132	GO:0045489: pectin biosynthetic process	1.50E-02
133	GO:0010154: fruit development	1.50E-02
134	GO:0046323: glucose import	1.50E-02
135	GO:0009414: response to water deprivation	1.51E-02
136	GO:0007165: signal transduction	1.55E-02
137	GO:0048544: recognition of pollen	1.58E-02
138	GO:0061025: membrane fusion	1.58E-02
139	GO:0042752: regulation of circadian rhythm	1.58E-02
140	GO:0006623: protein targeting to vacuole	1.66E-02
141	GO:0010183: pollen tube guidance	1.66E-02
142	GO:0009749: response to glucose	1.66E-02
143	GO:0019252: starch biosynthetic process	1.66E-02
144	GO:0008654: phospholipid biosynthetic process	1.66E-02
145	GO:0009851: auxin biosynthetic process	1.66E-02
146	GO:0007623: circadian rhythm	1.68E-02
147	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
148	GO:0006635: fatty acid beta-oxidation	1.75E-02
149	GO:0009630: gravitropism	1.83E-02
150	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.88E-02
151	GO:0006464: cellular protein modification process	2.00E-02
152	GO:0009567: double fertilization forming a zygote and endosperm	2.00E-02
153	GO:0010286: heat acclimation	2.09E-02
154	GO:0051607: defense response to virus	2.18E-02
155	GO:0001666: response to hypoxia	2.27E-02
156	GO:0016126: sterol biosynthetic process	2.27E-02
157	GO:0035556: intracellular signal transduction	2.36E-02
158	GO:0010029: regulation of seed germination	2.36E-02
159	GO:0006906: vesicle fusion	2.45E-02
160	GO:0009627: systemic acquired resistance	2.45E-02
161	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
162	GO:0006950: response to stress	2.55E-02
163	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
164	GO:0006970: response to osmotic stress	2.80E-02
165	GO:0006811: ion transport	2.94E-02
166	GO:0010119: regulation of stomatal movement	3.04E-02
167	GO:0009631: cold acclimation	3.04E-02
168	GO:0010043: response to zinc ion	3.04E-02
169	GO:0006511: ubiquitin-dependent protein catabolic process	3.23E-02
170	GO:0045087: innate immune response	3.24E-02
171	GO:0006099: tricarboxylic acid cycle	3.35E-02
172	GO:0046777: protein autophosphorylation	3.44E-02
173	GO:0030001: metal ion transport	3.56E-02
174	GO:0006631: fatty acid metabolic process	3.67E-02
175	GO:0042542: response to hydrogen peroxide	3.78E-02
176	GO:0000209: protein polyubiquitination	4.00E-02
177	GO:0009644: response to high light intensity	4.11E-02
178	GO:0009965: leaf morphogenesis	4.22E-02
179	GO:0006855: drug transmembrane transport	4.33E-02
180	GO:0000165: MAPK cascade	4.45E-02
181	GO:0010224: response to UV-B	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010293: abscisic aldehyde oxidase activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
4	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
5	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
6	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
7	GO:1990446: U1 snRNP binding	0.00E+00
8	GO:0004012: phospholipid-translocating ATPase activity	8.05E-05
9	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.37E-04
10	GO:0046870: cadmium ion binding	1.77E-04
11	GO:0015208: guanine transmembrane transporter activity	1.77E-04
12	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.77E-04
13	GO:0015294: solute:cation symporter activity	1.77E-04
14	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.77E-04
15	GO:0003867: 4-aminobutyrate transaminase activity	1.77E-04
16	GO:0015207: adenine transmembrane transporter activity	1.77E-04
17	GO:0009679: hexose:proton symporter activity	1.77E-04
18	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.01E-04
19	GO:0004061: arylformamidase activity	4.01E-04
20	GO:0004329: formate-tetrahydrofolate ligase activity	4.01E-04
21	GO:0032791: lead ion binding	4.01E-04
22	GO:0004609: phosphatidylserine decarboxylase activity	4.01E-04
23	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.01E-04
24	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.01E-04
25	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.01E-04
26	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.47E-04
27	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.55E-04
28	GO:0005047: signal recognition particle binding	6.55E-04
29	GO:0015086: cadmium ion transmembrane transporter activity	9.34E-04
30	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.34E-04
31	GO:0004108: citrate (Si)-synthase activity	9.34E-04
32	GO:0030527: structural constituent of chromatin	9.34E-04
33	GO:0003727: single-stranded RNA binding	1.07E-03
34	GO:0043015: gamma-tubulin binding	1.24E-03
35	GO:0015210: uracil transmembrane transporter activity	1.24E-03
36	GO:0004031: aldehyde oxidase activity	1.24E-03
37	GO:0050302: indole-3-acetaldehyde oxidase activity	1.24E-03
38	GO:0005253: anion channel activity	1.24E-03
39	GO:0009916: alternative oxidase activity	1.24E-03
40	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.24E-03
41	GO:0015145: monosaccharide transmembrane transporter activity	1.57E-03
42	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.57E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.57E-03
44	GO:0031369: translation initiation factor binding	1.94E-03
45	GO:0035252: UDP-xylosyltransferase activity	1.94E-03
46	GO:0036402: proteasome-activating ATPase activity	1.94E-03
47	GO:0048040: UDP-glucuronate decarboxylase activity	1.94E-03
48	GO:0004849: uridine kinase activity	2.32E-03
49	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.32E-03
50	GO:0004747: ribokinase activity	2.32E-03
51	GO:0004602: glutathione peroxidase activity	2.32E-03
52	GO:0004124: cysteine synthase activity	2.32E-03
53	GO:0070403: NAD+ binding	2.32E-03
54	GO:0015140: malate transmembrane transporter activity	2.74E-03
55	GO:0004620: phospholipase activity	2.74E-03
56	GO:0008865: fructokinase activity	3.17E-03
57	GO:0004525: ribonuclease III activity	3.17E-03
58	GO:0005096: GTPase activator activity	3.25E-03
59	GO:0050897: cobalt ion binding	3.57E-03
60	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.63E-03
61	GO:0004630: phospholipase D activity	3.63E-03
62	GO:0005509: calcium ion binding	3.75E-03
63	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.10E-03
64	GO:0000149: SNARE binding	4.27E-03
65	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.60E-03
66	GO:0005484: SNAP receptor activity	5.03E-03
67	GO:0005524: ATP binding	6.07E-03
68	GO:0031625: ubiquitin protein ligase binding	7.51E-03
69	GO:0017025: TBP-class protein binding	7.98E-03
70	GO:0030552: cAMP binding	7.98E-03
71	GO:0004867: serine-type endopeptidase inhibitor activity	7.98E-03
72	GO:0030553: cGMP binding	7.98E-03
73	GO:0043130: ubiquitin binding	9.26E-03
74	GO:0005345: purine nucleobase transmembrane transporter activity	9.92E-03
75	GO:0005216: ion channel activity	9.92E-03
76	GO:0043424: protein histidine kinase binding	9.92E-03
77	GO:0005516: calmodulin binding	9.98E-03
78	GO:0004707: MAP kinase activity	1.06E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.24E-02
80	GO:0030170: pyridoxal phosphate binding	1.35E-02
81	GO:0030551: cyclic nucleotide binding	1.43E-02
82	GO:0005249: voltage-gated potassium channel activity	1.43E-02
83	GO:0015144: carbohydrate transmembrane transporter activity	1.45E-02
84	GO:0005351: sugar:proton symporter activity	1.64E-02
85	GO:0004872: receptor activity	1.66E-02
86	GO:0005200: structural constituent of cytoskeleton	2.09E-02
87	GO:0051213: dioxygenase activity	2.27E-02
88	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
89	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.45E-02
90	GO:0030247: polysaccharide binding	2.55E-02
91	GO:0000287: magnesium ion binding	2.55E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	2.55E-02
93	GO:0016301: kinase activity	2.62E-02
94	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
95	GO:0004497: monooxygenase activity	3.22E-02
96	GO:0003697: single-stranded DNA binding	3.24E-02
97	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.24E-02
98	GO:0003993: acid phosphatase activity	3.35E-02
99	GO:0005507: copper ion binding	3.42E-02
100	GO:0050661: NADP binding	3.56E-02
101	GO:0043621: protein self-association	4.11E-02
102	GO:0051537: 2 iron, 2 sulfur cluster binding	4.11E-02
103	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.33E-02
104	GO:0003924: GTPase activity	4.73E-02
105	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
2	GO:0031981: nuclear lumen	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0005785: signal recognition particle receptor complex	0.00E+00
5	GO:0030140: trans-Golgi network transport vesicle	5.77E-05
6	GO:0005737: cytoplasm	1.10E-04
7	GO:0005783: endoplasmic reticulum	1.19E-04
8	GO:0005794: Golgi apparatus	1.65E-04
9	GO:0005886: plasma membrane	2.93E-04
10	GO:0031902: late endosome membrane	5.71E-04
11	GO:0005802: trans-Golgi network	7.28E-04
12	GO:0005829: cytosol	7.29E-04
13	GO:0016021: integral component of membrane	8.83E-04
14	GO:0000323: lytic vacuole	9.34E-04
15	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.24E-03
16	GO:0005776: autophagosome	1.24E-03
17	GO:0005770: late endosome	1.35E-03
18	GO:0005773: vacuole	1.47E-03
19	GO:0016363: nuclear matrix	2.32E-03
20	GO:0031597: cytosolic proteasome complex	2.32E-03
21	GO:0005789: endoplasmic reticulum membrane	2.66E-03
22	GO:0031595: nuclear proteasome complex	2.74E-03
23	GO:0012507: ER to Golgi transport vesicle membrane	3.17E-03
24	GO:0030131: clathrin adaptor complex	3.17E-03
25	GO:0000325: plant-type vacuole	3.57E-03
26	GO:0005768: endosome	3.59E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.63E-03
28	GO:0031901: early endosome membrane	4.10E-03
29	GO:0008540: proteasome regulatory particle, base subcomplex	4.60E-03
30	GO:0031201: SNARE complex	4.64E-03
31	GO:0030125: clathrin vesicle coat	5.11E-03
32	GO:0005665: DNA-directed RNA polymerase II, core complex	6.20E-03
33	GO:0010008: endosome membrane	8.28E-03
34	GO:0005769: early endosome	8.61E-03
35	GO:0070469: respiratory chain	9.92E-03
36	GO:0005905: clathrin-coated pit	1.06E-02
37	GO:0031410: cytoplasmic vesicle	1.13E-02
38	GO:0030136: clathrin-coated vesicle	1.35E-02
39	GO:0031965: nuclear membrane	1.66E-02
40	GO:0009705: plant-type vacuole membrane	1.68E-02
41	GO:0000785: chromatin	1.83E-02
42	GO:0000932: P-body	2.27E-02
43	GO:0000786: nucleosome	3.14E-02
44	GO:0009506: plasmodesma	3.33E-02
45	GO:0005774: vacuolar membrane	3.63E-02
46	GO:0031966: mitochondrial membrane	4.56E-02
47	GO:0000502: proteasome complex	4.80E-02