GO Enrichment Analysis of Co-expressed Genes with
AT3G27160
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042493: response to drug | 0.00E+00 |
| 2 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 7 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 8 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 9 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 10 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 11 | GO:0006412: translation | 1.05E-17 |
| 12 | GO:0032544: plastid translation | 6.26E-14 |
| 13 | GO:0015979: photosynthesis | 1.44E-12 |
| 14 | GO:0009735: response to cytokinin | 2.04E-10 |
| 15 | GO:0042254: ribosome biogenesis | 1.09E-09 |
| 16 | GO:0015976: carbon utilization | 6.66E-07 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 1.28E-06 |
| 18 | GO:0009658: chloroplast organization | 2.81E-06 |
| 19 | GO:0010196: nonphotochemical quenching | 8.00E-06 |
| 20 | GO:0090391: granum assembly | 1.99E-05 |
| 21 | GO:0010037: response to carbon dioxide | 7.81E-05 |
| 22 | GO:2000122: negative regulation of stomatal complex development | 7.81E-05 |
| 23 | GO:0010027: thylakoid membrane organization | 9.12E-05 |
| 24 | GO:0010190: cytochrome b6f complex assembly | 1.76E-04 |
| 25 | GO:0042372: phylloquinone biosynthetic process | 2.38E-04 |
| 26 | GO:0009772: photosynthetic electron transport in photosystem II | 3.09E-04 |
| 27 | GO:0043489: RNA stabilization | 3.55E-04 |
| 28 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.55E-04 |
| 29 | GO:1904964: positive regulation of phytol biosynthetic process | 3.55E-04 |
| 30 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.55E-04 |
| 31 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.55E-04 |
| 32 | GO:0060627: regulation of vesicle-mediated transport | 3.55E-04 |
| 33 | GO:0000413: protein peptidyl-prolyl isomerization | 3.68E-04 |
| 34 | GO:0006869: lipid transport | 5.37E-04 |
| 35 | GO:0010024: phytochromobilin biosynthetic process | 7.72E-04 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.72E-04 |
| 37 | GO:0006949: syncytium formation | 7.85E-04 |
| 38 | GO:0042742: defense response to bacterium | 8.83E-04 |
| 39 | GO:0015995: chlorophyll biosynthetic process | 1.05E-03 |
| 40 | GO:0009725: response to hormone | 1.17E-03 |
| 41 | GO:0006518: peptide metabolic process | 1.25E-03 |
| 42 | GO:0071492: cellular response to UV-A | 1.25E-03 |
| 43 | GO:0006696: ergosterol biosynthetic process | 1.25E-03 |
| 44 | GO:0006788: heme oxidation | 1.25E-03 |
| 45 | GO:0006954: inflammatory response | 1.25E-03 |
| 46 | GO:0015840: urea transport | 1.25E-03 |
| 47 | GO:0010143: cutin biosynthetic process | 1.31E-03 |
| 48 | GO:0010207: photosystem II assembly | 1.31E-03 |
| 49 | GO:0006833: water transport | 1.64E-03 |
| 50 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.80E-03 |
| 51 | GO:2001141: regulation of RNA biosynthetic process | 1.80E-03 |
| 52 | GO:0009650: UV protection | 1.80E-03 |
| 53 | GO:0006424: glutamyl-tRNA aminoacylation | 1.80E-03 |
| 54 | GO:0009409: response to cold | 1.82E-03 |
| 55 | GO:0010114: response to red light | 2.21E-03 |
| 56 | GO:0006810: transport | 2.21E-03 |
| 57 | GO:0071486: cellular response to high light intensity | 2.42E-03 |
| 58 | GO:0045727: positive regulation of translation | 2.42E-03 |
| 59 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.63E-03 |
| 60 | GO:0032543: mitochondrial translation | 3.09E-03 |
| 61 | GO:0006564: L-serine biosynthetic process | 3.09E-03 |
| 62 | GO:0010236: plastoquinone biosynthetic process | 3.09E-03 |
| 63 | GO:0031365: N-terminal protein amino acid modification | 3.09E-03 |
| 64 | GO:0006461: protein complex assembly | 3.09E-03 |
| 65 | GO:0042335: cuticle development | 3.34E-03 |
| 66 | GO:0042549: photosystem II stabilization | 3.82E-03 |
| 67 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.82E-03 |
| 68 | GO:0000470: maturation of LSU-rRNA | 3.82E-03 |
| 69 | GO:0032973: amino acid export | 3.82E-03 |
| 70 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.60E-03 |
| 71 | GO:0006694: steroid biosynthetic process | 4.60E-03 |
| 72 | GO:0010019: chloroplast-nucleus signaling pathway | 4.60E-03 |
| 73 | GO:0010555: response to mannitol | 4.60E-03 |
| 74 | GO:0009955: adaxial/abaxial pattern specification | 4.60E-03 |
| 75 | GO:1901259: chloroplast rRNA processing | 4.60E-03 |
| 76 | GO:0009828: plant-type cell wall loosening | 5.40E-03 |
| 77 | GO:0043090: amino acid import | 5.44E-03 |
| 78 | GO:0006605: protein targeting | 6.32E-03 |
| 79 | GO:0009642: response to light intensity | 6.32E-03 |
| 80 | GO:0030091: protein repair | 6.32E-03 |
| 81 | GO:0046620: regulation of organ growth | 6.32E-03 |
| 82 | GO:0006526: arginine biosynthetic process | 7.25E-03 |
| 83 | GO:0009808: lignin metabolic process | 7.25E-03 |
| 84 | GO:0071482: cellular response to light stimulus | 7.25E-03 |
| 85 | GO:0009657: plastid organization | 7.25E-03 |
| 86 | GO:0045454: cell redox homeostasis | 7.57E-03 |
| 87 | GO:0080144: amino acid homeostasis | 8.22E-03 |
| 88 | GO:0018298: protein-chromophore linkage | 8.42E-03 |
| 89 | GO:0009817: defense response to fungus, incompatible interaction | 8.42E-03 |
| 90 | GO:0010205: photoinhibition | 9.24E-03 |
| 91 | GO:0006779: porphyrin-containing compound biosynthetic process | 9.24E-03 |
| 92 | GO:0009631: cold acclimation | 9.74E-03 |
| 93 | GO:0010119: regulation of stomatal movement | 9.74E-03 |
| 94 | GO:0045490: pectin catabolic process | 1.02E-02 |
| 95 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.03E-02 |
| 96 | GO:0009637: response to blue light | 1.07E-02 |
| 97 | GO:0034599: cellular response to oxidative stress | 1.12E-02 |
| 98 | GO:0055085: transmembrane transport | 1.12E-02 |
| 99 | GO:0006352: DNA-templated transcription, initiation | 1.14E-02 |
| 100 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.14E-02 |
| 101 | GO:0043085: positive regulation of catalytic activity | 1.14E-02 |
| 102 | GO:0006839: mitochondrial transport | 1.22E-02 |
| 103 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.26E-02 |
| 104 | GO:0006006: glucose metabolic process | 1.38E-02 |
| 105 | GO:0010020: chloroplast fission | 1.50E-02 |
| 106 | GO:0019253: reductive pentose-phosphate cycle | 1.50E-02 |
| 107 | GO:0009826: unidimensional cell growth | 1.69E-02 |
| 108 | GO:0009664: plant-type cell wall organization | 1.74E-02 |
| 109 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.76E-02 |
| 110 | GO:0019762: glucosinolate catabolic process | 1.76E-02 |
| 111 | GO:0019344: cysteine biosynthetic process | 1.89E-02 |
| 112 | GO:0000027: ribosomal large subunit assembly | 1.89E-02 |
| 113 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.03E-02 |
| 114 | GO:0007017: microtubule-based process | 2.03E-02 |
| 115 | GO:0061077: chaperone-mediated protein folding | 2.17E-02 |
| 116 | GO:0031408: oxylipin biosynthetic process | 2.17E-02 |
| 117 | GO:0030245: cellulose catabolic process | 2.31E-02 |
| 118 | GO:0016226: iron-sulfur cluster assembly | 2.31E-02 |
| 119 | GO:0009411: response to UV | 2.46E-02 |
| 120 | GO:0009416: response to light stimulus | 2.46E-02 |
| 121 | GO:0009306: protein secretion | 2.61E-02 |
| 122 | GO:0019722: calcium-mediated signaling | 2.61E-02 |
| 123 | GO:0034220: ion transmembrane transport | 2.92E-02 |
| 124 | GO:0006662: glycerol ether metabolic process | 3.08E-02 |
| 125 | GO:0006520: cellular amino acid metabolic process | 3.08E-02 |
| 126 | GO:0015986: ATP synthesis coupled proton transport | 3.25E-02 |
| 127 | GO:0000302: response to reactive oxygen species | 3.58E-02 |
| 128 | GO:0016132: brassinosteroid biosynthetic process | 3.58E-02 |
| 129 | GO:0002229: defense response to oomycetes | 3.58E-02 |
| 130 | GO:0006457: protein folding | 3.59E-02 |
| 131 | GO:0016042: lipid catabolic process | 3.65E-02 |
| 132 | GO:0009630: gravitropism | 3.75E-02 |
| 133 | GO:0009790: embryo development | 3.88E-02 |
| 134 | GO:1901657: glycosyl compound metabolic process | 3.93E-02 |
| 135 | GO:0009793: embryo development ending in seed dormancy | 4.14E-02 |
| 136 | GO:0006413: translational initiation | 4.27E-02 |
| 137 | GO:0007267: cell-cell signaling | 4.29E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 5 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 7 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 8 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 9 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 10 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 1.79E-27 |
| 12 | GO:0003735: structural constituent of ribosome | 4.88E-20 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.65E-09 |
| 14 | GO:0005528: FK506 binding | 6.73E-06 |
| 15 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 1.99E-05 |
| 16 | GO:0001872: (1->3)-beta-D-glucan binding | 4.39E-05 |
| 17 | GO:0004089: carbonate dehydratase activity | 7.95E-05 |
| 18 | GO:0008266: poly(U) RNA binding | 9.60E-05 |
| 19 | GO:0051920: peroxiredoxin activity | 2.38E-04 |
| 20 | GO:0030570: pectate lyase activity | 2.66E-04 |
| 21 | GO:0015200: methylammonium transmembrane transporter activity | 3.55E-04 |
| 22 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 3.55E-04 |
| 23 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 3.55E-04 |
| 24 | GO:0016209: antioxidant activity | 3.89E-04 |
| 25 | GO:0004617: phosphoglycerate dehydrogenase activity | 7.72E-04 |
| 26 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 7.72E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 7.72E-04 |
| 28 | GO:0016168: chlorophyll binding | 9.14E-04 |
| 29 | GO:0016788: hydrolase activity, acting on ester bonds | 9.63E-04 |
| 30 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.09E-03 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 1.25E-03 |
| 32 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 1.25E-03 |
| 33 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 1.25E-03 |
| 34 | GO:0050734: hydroxycinnamoyltransferase activity | 1.25E-03 |
| 35 | GO:0008289: lipid binding | 1.30E-03 |
| 36 | GO:0043023: ribosomal large subunit binding | 1.80E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.80E-03 |
| 38 | GO:0016851: magnesium chelatase activity | 1.80E-03 |
| 39 | GO:0004392: heme oxygenase (decyclizing) activity | 2.42E-03 |
| 40 | GO:0015204: urea transmembrane transporter activity | 2.42E-03 |
| 41 | GO:0004659: prenyltransferase activity | 2.42E-03 |
| 42 | GO:0001053: plastid sigma factor activity | 2.42E-03 |
| 43 | GO:0016987: sigma factor activity | 2.42E-03 |
| 44 | GO:0043495: protein anchor | 2.42E-03 |
| 45 | GO:0022891: substrate-specific transmembrane transporter activity | 2.63E-03 |
| 46 | GO:0051287: NAD binding | 2.82E-03 |
| 47 | GO:0004040: amidase activity | 3.09E-03 |
| 48 | GO:0016208: AMP binding | 3.82E-03 |
| 49 | GO:0016688: L-ascorbate peroxidase activity | 3.82E-03 |
| 50 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.82E-03 |
| 51 | GO:0008200: ion channel inhibitor activity | 3.82E-03 |
| 52 | GO:0008519: ammonium transmembrane transporter activity | 3.82E-03 |
| 53 | GO:0004130: cytochrome-c peroxidase activity | 3.82E-03 |
| 54 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.82E-03 |
| 55 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 4.60E-03 |
| 56 | GO:0051753: mannan synthase activity | 4.60E-03 |
| 57 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.60E-03 |
| 58 | GO:0019899: enzyme binding | 5.44E-03 |
| 59 | GO:0008235: metalloexopeptidase activity | 5.44E-03 |
| 60 | GO:0030674: protein binding, bridging | 6.32E-03 |
| 61 | GO:0004033: aldo-keto reductase (NADP) activity | 6.32E-03 |
| 62 | GO:0052747: sinapyl alcohol dehydrogenase activity | 6.32E-03 |
| 63 | GO:0015250: water channel activity | 6.44E-03 |
| 64 | GO:0052689: carboxylic ester hydrolase activity | 6.70E-03 |
| 65 | GO:0005509: calcium ion binding | 7.24E-03 |
| 66 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 7.25E-03 |
| 67 | GO:0016829: lyase activity | 7.47E-03 |
| 68 | GO:0102483: scopolin beta-glucosidase activity | 7.59E-03 |
| 69 | GO:0030247: polysaccharide binding | 7.59E-03 |
| 70 | GO:0047617: acyl-CoA hydrolase activity | 9.24E-03 |
| 71 | GO:0008047: enzyme activator activity | 1.03E-02 |
| 72 | GO:0004177: aminopeptidase activity | 1.14E-02 |
| 73 | GO:0008422: beta-glucosidase activity | 1.17E-02 |
| 74 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.26E-02 |
| 75 | GO:0031072: heat shock protein binding | 1.38E-02 |
| 76 | GO:0031409: pigment binding | 1.76E-02 |
| 77 | GO:0051536: iron-sulfur cluster binding | 1.89E-02 |
| 78 | GO:0043424: protein histidine kinase binding | 2.03E-02 |
| 79 | GO:0008810: cellulase activity | 2.46E-02 |
| 80 | GO:0047134: protein-disulfide reductase activity | 2.77E-02 |
| 81 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 3.08E-02 |
| 82 | GO:0008080: N-acetyltransferase activity | 3.08E-02 |
| 83 | GO:0004871: signal transducer activity | 3.09E-02 |
| 84 | GO:0050662: coenzyme binding | 3.25E-02 |
| 85 | GO:0004791: thioredoxin-disulfide reductase activity | 3.25E-02 |
| 86 | GO:0004872: receptor activity | 3.41E-02 |
| 87 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.58E-02 |
| 88 | GO:0003924: GTPase activity | 3.78E-02 |
| 89 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.93E-02 |
| 90 | GO:0016791: phosphatase activity | 4.11E-02 |
| 91 | GO:0009055: electron carrier activity | 4.12E-02 |
| 92 | GO:0005200: structural constituent of cytoskeleton | 4.29E-02 |
| 93 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 4.29E-02 |
| 94 | GO:0016597: amino acid binding | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.30E-57 |
| 4 | GO:0009570: chloroplast stroma | 6.67E-44 |
| 5 | GO:0009941: chloroplast envelope | 3.87E-36 |
| 6 | GO:0009579: thylakoid | 9.65E-33 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.61E-32 |
| 8 | GO:0005840: ribosome | 6.14E-20 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 4.47E-19 |
| 10 | GO:0031977: thylakoid lumen | 4.58E-19 |
| 11 | GO:0009534: chloroplast thylakoid | 4.60E-14 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 3.84E-09 |
| 13 | GO:0048046: apoplast | 1.27E-08 |
| 14 | GO:0019898: extrinsic component of membrane | 4.83E-08 |
| 15 | GO:0046658: anchored component of plasma membrane | 1.56E-06 |
| 16 | GO:0030095: chloroplast photosystem II | 3.19E-06 |
| 17 | GO:0016020: membrane | 2.20E-05 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-05 |
| 19 | GO:0000311: plastid large ribosomal subunit | 6.50E-05 |
| 20 | GO:0010319: stromule | 7.33E-05 |
| 21 | GO:0031225: anchored component of membrane | 1.19E-04 |
| 22 | GO:0009547: plastid ribosome | 3.55E-04 |
| 23 | GO:0009523: photosystem II | 4.90E-04 |
| 24 | GO:0010007: magnesium chelatase complex | 1.25E-03 |
| 25 | GO:0000312: plastid small ribosomal subunit | 1.31E-03 |
| 26 | GO:0031969: chloroplast membrane | 1.36E-03 |
| 27 | GO:0015934: large ribosomal subunit | 1.43E-03 |
| 28 | GO:0009505: plant-type cell wall | 1.51E-03 |
| 29 | GO:0005618: cell wall | 1.54E-03 |
| 30 | GO:0015630: microtubule cytoskeleton | 1.80E-03 |
| 31 | GO:0042651: thylakoid membrane | 2.00E-03 |
| 32 | GO:0015935: small ribosomal subunit | 2.20E-03 |
| 33 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.82E-03 |
| 34 | GO:0009533: chloroplast stromal thylakoid | 5.44E-03 |
| 35 | GO:0042807: central vacuole | 5.44E-03 |
| 36 | GO:0005874: microtubule | 5.46E-03 |
| 37 | GO:0010287: plastoglobule | 6.31E-03 |
| 38 | GO:0000326: protein storage vacuole | 7.25E-03 |
| 39 | GO:0005763: mitochondrial small ribosomal subunit | 8.22E-03 |
| 40 | GO:0008180: COP9 signalosome | 8.22E-03 |
| 41 | GO:0005576: extracellular region | 1.13E-02 |
| 42 | GO:0009536: plastid | 1.26E-02 |
| 43 | GO:0031012: extracellular matrix | 1.38E-02 |
| 44 | GO:0030076: light-harvesting complex | 1.62E-02 |
| 45 | GO:0009532: plastid stroma | 2.17E-02 |
| 46 | GO:0022626: cytosolic ribosome | 2.30E-02 |
| 47 | GO:0022625: cytosolic large ribosomal subunit | 2.48E-02 |
| 48 | GO:0009522: photosystem I | 3.25E-02 |
| 49 | GO:0005778: peroxisomal membrane | 4.29E-02 |
| 50 | GO:0009295: nucleoid | 4.29E-02 |
| 51 | GO:0030529: intracellular ribonucleoprotein complex | 4.65E-02 |