Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015805: S-adenosyl-L-methionine transport0.00E+00
2GO:2001294: malonyl-CoA catabolic process0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0015979: photosynthesis3.49E-15
10GO:0009773: photosynthetic electron transport in photosystem I5.80E-09
11GO:0009735: response to cytokinin3.77E-06
12GO:0009658: chloroplast organization7.43E-06
13GO:0006810: transport1.03E-05
14GO:0006094: gluconeogenesis4.22E-05
15GO:0006546: glycine catabolic process4.83E-05
16GO:0010037: response to carbon dioxide4.83E-05
17GO:0015976: carbon utilization4.83E-05
18GO:2000122: negative regulation of stomatal complex development4.83E-05
19GO:0019253: reductive pentose-phosphate cycle5.12E-05
20GO:0018298: protein-chromophore linkage6.99E-05
21GO:0031365: N-terminal protein amino acid modification7.68E-05
22GO:0010190: cytochrome b6f complex assembly1.12E-04
23GO:0042549: photosystem II stabilization1.12E-04
24GO:0010196: nonphotochemical quenching2.02E-04
25GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.68E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.68E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.68E-04
28GO:0033481: galacturonate biosynthetic process2.68E-04
29GO:0042371: vitamin K biosynthetic process2.68E-04
30GO:0043686: co-translational protein modification2.68E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway2.68E-04
32GO:0006427: histidyl-tRNA aminoacylation2.68E-04
33GO:0009443: pyridoxal 5'-phosphate salvage2.68E-04
34GO:0009657: plastid organization3.14E-04
35GO:0071482: cellular response to light stimulus3.14E-04
36GO:0042254: ribosome biogenesis4.60E-04
37GO:0010115: regulation of abscisic acid biosynthetic process5.89E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process5.89E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process5.89E-04
40GO:0010024: phytochromobilin biosynthetic process5.89E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process5.89E-04
42GO:0006415: translational termination6.07E-04
43GO:0043085: positive regulation of catalytic activity6.07E-04
44GO:0006352: DNA-templated transcription, initiation6.07E-04
45GO:0010207: photosystem II assembly8.84E-04
46GO:0010020: chloroplast fission8.84E-04
47GO:0010581: regulation of starch biosynthetic process9.55E-04
48GO:0006788: heme oxidation9.55E-04
49GO:0006954: inflammatory response9.55E-04
50GO:0006753: nucleoside phosphate metabolic process9.55E-04
51GO:0019563: glycerol catabolic process9.55E-04
52GO:0006518: peptide metabolic process9.55E-04
53GO:0006433: prolyl-tRNA aminoacylation9.55E-04
54GO:0071492: cellular response to UV-A9.55E-04
55GO:0006696: ergosterol biosynthetic process9.55E-04
56GO:0032504: multicellular organism reproduction9.55E-04
57GO:0006000: fructose metabolic process9.55E-04
58GO:0006412: translation9.82E-04
59GO:0009768: photosynthesis, light harvesting in photosystem I1.33E-03
60GO:2001141: regulation of RNA biosynthetic process1.36E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.36E-03
62GO:0009152: purine ribonucleotide biosynthetic process1.36E-03
63GO:0046653: tetrahydrofolate metabolic process1.36E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch1.36E-03
65GO:0009644: response to high light intensity1.44E-03
66GO:0031122: cytoplasmic microtubule organization1.83E-03
67GO:0071483: cellular response to blue light1.83E-03
68GO:0010109: regulation of photosynthesis1.83E-03
69GO:0071486: cellular response to high light intensity1.83E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system1.83E-03
71GO:0015994: chlorophyll metabolic process1.83E-03
72GO:0006564: L-serine biosynthetic process2.33E-03
73GO:0006461: protein complex assembly2.33E-03
74GO:0009107: lipoate biosynthetic process2.33E-03
75GO:0080110: sporopollenin biosynthetic process2.33E-03
76GO:0006096: glycolytic process2.36E-03
77GO:0055114: oxidation-reduction process2.71E-03
78GO:0006596: polyamine biosynthetic process2.88E-03
79GO:0006561: proline biosynthetic process2.88E-03
80GO:0048759: xylem vessel member cell differentiation2.88E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.88E-03
82GO:0000470: maturation of LSU-rRNA2.88E-03
83GO:0016554: cytidine to uridine editing2.88E-03
84GO:0042372: phylloquinone biosynthetic process3.46E-03
85GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.46E-03
86GO:0009854: oxidative photosynthetic carbon pathway3.46E-03
87GO:0010019: chloroplast-nucleus signaling pathway3.46E-03
88GO:0045454: cell redox homeostasis4.00E-03
89GO:0015937: coenzyme A biosynthetic process4.08E-03
90GO:0050829: defense response to Gram-negative bacterium4.08E-03
91GO:0009645: response to low light intensity stimulus4.08E-03
92GO:0006400: tRNA modification4.08E-03
93GO:0030091: protein repair4.73E-03
94GO:0032259: methylation5.15E-03
95GO:0032544: plastid translation5.42E-03
96GO:0017004: cytochrome complex assembly5.42E-03
97GO:0006002: fructose 6-phosphate metabolic process5.42E-03
98GO:0019430: removal of superoxide radicals5.42E-03
99GO:0010206: photosystem II repair6.14E-03
100GO:0000373: Group II intron splicing6.14E-03
101GO:0006098: pentose-phosphate shunt6.14E-03
102GO:0010119: regulation of stomatal movement6.40E-03
103GO:0010380: regulation of chlorophyll biosynthetic process6.90E-03
104GO:0010205: photoinhibition6.90E-03
105GO:1900865: chloroplast RNA modification6.90E-03
106GO:0009637: response to blue light7.02E-03
107GO:0009853: photorespiration7.02E-03
108GO:0034599: cellular response to oxidative stress7.34E-03
109GO:0019538: protein metabolic process7.68E-03
110GO:0009688: abscisic acid biosynthetic process7.68E-03
111GO:0043069: negative regulation of programmed cell death7.68E-03
112GO:0006839: mitochondrial transport8.01E-03
113GO:0009750: response to fructose8.50E-03
114GO:0018119: peptidyl-cysteine S-nitrosylation8.50E-03
115GO:0010114: response to red light9.06E-03
116GO:0010628: positive regulation of gene expression1.02E-02
117GO:0009767: photosynthetic electron transport chain1.02E-02
118GO:0005986: sucrose biosynthetic process1.02E-02
119GO:0010143: cutin biosynthetic process1.11E-02
120GO:0005985: sucrose metabolic process1.21E-02
121GO:0090351: seedling development1.21E-02
122GO:0009225: nucleotide-sugar metabolic process1.21E-02
123GO:0051603: proteolysis involved in cellular protein catabolic process1.27E-02
124GO:0006636: unsaturated fatty acid biosynthetic process1.30E-02
125GO:0000027: ribosomal large subunit assembly1.40E-02
126GO:0006418: tRNA aminoacylation for protein translation1.50E-02
127GO:0031408: oxylipin biosynthetic process1.61E-02
128GO:0061077: chaperone-mediated protein folding1.61E-02
129GO:0055085: transmembrane transport1.88E-02
130GO:0019722: calcium-mediated signaling1.94E-02
131GO:0010584: pollen exine formation1.94E-02
132GO:0009409: response to cold2.03E-02
133GO:0016117: carotenoid biosynthetic process2.05E-02
134GO:0080022: primary root development2.17E-02
135GO:0010087: phloem or xylem histogenesis2.17E-02
136GO:0006662: glycerol ether metabolic process2.29E-02
137GO:0010182: sugar mediated signaling pathway2.29E-02
138GO:0042744: hydrogen peroxide catabolic process2.49E-02
139GO:0000302: response to reactive oxygen species2.65E-02
140GO:1901657: glycosyl compound metabolic process2.91E-02
141GO:0007267: cell-cell signaling3.18E-02
142GO:0006508: proteolysis3.21E-02
143GO:0001666: response to hypoxia3.45E-02
144GO:0010027: thylakoid membrane organization3.45E-02
145GO:0042128: nitrate assimilation3.73E-02
146GO:0015995: chlorophyll biosynthetic process3.88E-02
147GO:0016311: dephosphorylation4.02E-02
148GO:0048481: plant ovule development4.17E-02
149GO:0009817: defense response to fungus, incompatible interaction4.17E-02
150GO:0009407: toxin catabolic process4.47E-02
151GO:0010218: response to far red light4.47E-02
152GO:0009631: cold acclimation4.62E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0010487: thermospermine synthase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0010301: xanthoxin dehydrogenase activity0.00E+00
12GO:0019843: rRNA binding2.81E-08
13GO:0016168: chlorophyll binding2.16E-06
14GO:0016149: translation release factor activity, codon specific2.67E-05
15GO:0001053: plastid sigma factor activity4.83E-05
16GO:0016987: sigma factor activity4.83E-05
17GO:0005528: FK506 binding8.58E-05
18GO:0022891: substrate-specific transmembrane transporter activity1.49E-04
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.21E-04
20GO:0004033: aldo-keto reductase (NADP) activity2.55E-04
21GO:0009496: plastoquinol--plastocyanin reductase activity2.68E-04
22GO:0008568: microtubule-severing ATPase activity2.68E-04
23GO:0042586: peptide deformylase activity2.68E-04
24GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.68E-04
25GO:0051996: squalene synthase activity2.68E-04
26GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.68E-04
27GO:0004821: histidine-tRNA ligase activity2.68E-04
28GO:0016768: spermine synthase activity2.68E-04
29GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.68E-04
30GO:0030794: (S)-coclaurine-N-methyltransferase activity2.68E-04
31GO:0004807: triose-phosphate isomerase activity2.68E-04
32GO:0080132: fatty acid alpha-hydroxylase activity2.68E-04
33GO:0010945: CoA pyrophosphatase activity2.68E-04
34GO:0003747: translation release factor activity3.80E-04
35GO:0008047: enzyme activator activity5.26E-04
36GO:0003735: structural constituent of ribosome5.45E-04
37GO:0016630: protochlorophyllide reductase activity5.89E-04
38GO:0008967: phosphoglycolate phosphatase activity5.89E-04
39GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.89E-04
40GO:0047746: chlorophyllase activity5.89E-04
41GO:0004618: phosphoglycerate kinase activity5.89E-04
42GO:0004617: phosphoglycerate dehydrogenase activity5.89E-04
43GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.89E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.89E-04
45GO:0018708: thiol S-methyltransferase activity5.89E-04
46GO:0016491: oxidoreductase activity6.19E-04
47GO:0004089: carbonate dehydratase activity7.86E-04
48GO:0004148: dihydrolipoyl dehydrogenase activity9.55E-04
49GO:0004751: ribose-5-phosphate isomerase activity9.55E-04
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.55E-04
51GO:0070402: NADPH binding9.55E-04
52GO:0008864: formyltetrahydrofolate deformylase activity9.55E-04
53GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.55E-04
54GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.55E-04
55GO:0004827: proline-tRNA ligase activity9.55E-04
56GO:0050734: hydroxycinnamoyltransferase activity9.55E-04
57GO:0016992: lipoate synthase activity9.55E-04
58GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.55E-04
59GO:0031409: pigment binding1.10E-03
60GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.36E-03
61GO:0001872: (1->3)-beta-D-glucan binding1.36E-03
62GO:0004375: glycine dehydrogenase (decarboxylating) activity1.36E-03
63GO:0051537: 2 iron, 2 sulfur cluster binding1.44E-03
64GO:0043495: protein anchor1.83E-03
65GO:0050378: UDP-glucuronate 4-epimerase activity1.83E-03
66GO:0004392: heme oxygenase (decyclizing) activity1.83E-03
67GO:0004659: prenyltransferase activity1.83E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.83E-03
69GO:0008168: methyltransferase activity2.07E-03
70GO:0003959: NADPH dehydrogenase activity2.33E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor2.33E-03
72GO:0050662: coenzyme binding2.56E-03
73GO:0004791: thioredoxin-disulfide reductase activity2.56E-03
74GO:0000210: NAD+ diphosphatase activity2.88E-03
75GO:0016208: AMP binding2.88E-03
76GO:0016688: L-ascorbate peroxidase activity2.88E-03
77GO:0004332: fructose-bisphosphate aldolase activity2.88E-03
78GO:0004130: cytochrome-c peroxidase activity2.88E-03
79GO:0048038: quinone binding2.94E-03
80GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.35E-03
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.46E-03
82GO:0051920: peroxiredoxin activity3.46E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.46E-03
84GO:0019899: enzyme binding4.08E-03
85GO:0008235: metalloexopeptidase activity4.08E-03
86GO:0016209: antioxidant activity4.73E-03
87GO:0046872: metal ion binding5.30E-03
88GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.42E-03
89GO:0047617: acyl-CoA hydrolase activity6.90E-03
90GO:0004177: aminopeptidase activity8.50E-03
91GO:0015386: potassium:proton antiporter activity8.50E-03
92GO:0004185: serine-type carboxypeptidase activity9.06E-03
93GO:0004022: alcohol dehydrogenase (NAD) activity1.02E-02
94GO:0031072: heat shock protein binding1.02E-02
95GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.22E-02
96GO:0015079: potassium ion transmembrane transporter activity1.50E-02
97GO:0043424: protein histidine kinase binding1.50E-02
98GO:0016787: hydrolase activity1.64E-02
99GO:0047134: protein-disulfide reductase activity2.05E-02
100GO:0004812: aminoacyl-tRNA ligase activity2.05E-02
101GO:0009055: electron carrier activity2.45E-02
102GO:0016597: amino acid binding3.31E-02
103GO:0009931: calcium-dependent protein serine/threonine kinase activity3.73E-02
104GO:0042802: identical protein binding3.83E-02
105GO:0030247: polysaccharide binding3.88E-02
106GO:0004683: calmodulin-dependent protein kinase activity3.88E-02
107GO:0102483: scopolin beta-glucosidase activity3.88E-02
108GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.02E-02
109GO:0008236: serine-type peptidase activity4.02E-02
110GO:0003824: catalytic activity4.27E-02
111GO:0015238: drug transmembrane transporter activity4.32E-02
112GO:0004222: metalloendopeptidase activity4.47E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.04E-65
4GO:0009535: chloroplast thylakoid membrane1.04E-34
5GO:0009941: chloroplast envelope1.81E-25
6GO:0009570: chloroplast stroma3.34E-23
7GO:0009579: thylakoid6.11E-17
8GO:0009543: chloroplast thylakoid lumen4.69E-14
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.28E-09
10GO:0009534: chloroplast thylakoid1.27E-08
11GO:0031977: thylakoid lumen4.95E-07
12GO:0009523: photosystem II5.59E-07
13GO:0031969: chloroplast membrane1.32E-06
14GO:0010319: stromule3.32E-05
15GO:0042651: thylakoid membrane9.96E-05
16GO:0017101: aminoacyl-tRNA synthetase multienzyme complex2.68E-04
17GO:0009782: photosystem I antenna complex2.68E-04
18GO:0005840: ribosome3.50E-04
19GO:0030095: chloroplast photosystem II8.84E-04
20GO:0030076: light-harvesting complex9.87E-04
21GO:0009654: photosystem II oxygen evolving complex1.33E-03
22GO:0005960: glycine cleavage complex1.36E-03
23GO:0009512: cytochrome b6f complex2.33E-03
24GO:0019898: extrinsic component of membrane2.75E-03
25GO:0010287: plastoglobule3.71E-03
26GO:0005778: peroxisomal membrane3.78E-03
27GO:0009533: chloroplast stromal thylakoid4.08E-03
28GO:0000312: plastid small ribosomal subunit1.11E-02
29GO:0005875: microtubule associated complex1.30E-02
30GO:0022625: cytosolic large ribosomal subunit1.46E-02
31GO:0009532: plastid stroma1.61E-02
32GO:0015935: small ribosomal subunit1.61E-02
33GO:0009536: plastid1.72E-02
34GO:0009706: chloroplast inner membrane1.75E-02
35GO:0048046: apoplast1.79E-02
36GO:0009522: photosystem I2.41E-02
37GO:0032580: Golgi cisterna membrane3.04E-02
38GO:0009295: nucleoid3.18E-02
39GO:0030529: intracellular ribonucleoprotein complex3.45E-02
40GO:0046658: anchored component of plasma membrane3.99E-02
41GO:0015934: large ribosomal subunit4.62E-02
Gene type



Gene DE type