Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26710

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051881: regulation of mitochondrial membrane potential0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0032544: plastid translation7.23E-09
14GO:0006412: translation1.13E-06
15GO:0009658: chloroplast organization1.41E-06
16GO:0042254: ribosome biogenesis1.53E-06
17GO:0009735: response to cytokinin2.35E-06
18GO:0009773: photosynthetic electron transport in photosystem I3.27E-06
19GO:0018119: peptidyl-cysteine S-nitrosylation3.27E-06
20GO:0015979: photosynthesis5.82E-06
21GO:0010207: photosystem II assembly8.00E-06
22GO:0006810: transport2.00E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.23E-05
24GO:0010037: response to carbon dioxide1.26E-04
25GO:0015976: carbon utilization1.26E-04
26GO:0019464: glycine decarboxylation via glycine cleavage system1.26E-04
27GO:2000122: negative regulation of stomatal complex development1.26E-04
28GO:0006546: glycine catabolic process1.26E-04
29GO:0045454: cell redox homeostasis2.60E-04
30GO:0042742: defense response to bacterium2.73E-04
31GO:0042549: photosystem II stabilization2.75E-04
32GO:0061077: chaperone-mediated protein folding3.67E-04
33GO:0042026: protein refolding3.68E-04
34GO:0071588: hydrogen peroxide mediated signaling pathway4.73E-04
35GO:0009443: pyridoxal 5'-phosphate salvage4.73E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.73E-04
37GO:0071370: cellular response to gibberellin stimulus4.73E-04
38GO:1904964: positive regulation of phytol biosynthetic process4.73E-04
39GO:0016117: carotenoid biosynthetic process5.76E-04
40GO:0000413: protein peptidyl-prolyl isomerization6.37E-04
41GO:0009409: response to cold6.66E-04
42GO:0080183: response to photooxidative stress1.02E-03
43GO:0030388: fructose 1,6-bisphosphate metabolic process1.02E-03
44GO:2000123: positive regulation of stomatal complex development1.02E-03
45GO:0010275: NAD(P)H dehydrogenase complex assembly1.02E-03
46GO:0043039: tRNA aminoacylation1.02E-03
47GO:0006695: cholesterol biosynthetic process1.02E-03
48GO:1902326: positive regulation of chlorophyll biosynthetic process1.02E-03
49GO:0006423: cysteinyl-tRNA aminoacylation1.02E-03
50GO:0055114: oxidation-reduction process1.13E-03
51GO:0006415: translational termination1.36E-03
52GO:0019684: photosynthesis, light reaction1.36E-03
53GO:0043085: positive regulation of catalytic activity1.36E-03
54GO:0006065: UDP-glucuronate biosynthetic process1.66E-03
55GO:0090506: axillary shoot meristem initiation1.66E-03
56GO:0006000: fructose metabolic process1.66E-03
57GO:0006518: peptide metabolic process1.66E-03
58GO:0010581: regulation of starch biosynthetic process1.66E-03
59GO:0071492: cellular response to UV-A1.66E-03
60GO:0006696: ergosterol biosynthetic process1.66E-03
61GO:0009767: photosynthetic electron transport chain1.77E-03
62GO:0019253: reductive pentose-phosphate cycle2.00E-03
63GO:0010020: chloroplast fission2.00E-03
64GO:0018298: protein-chromophore linkage2.04E-03
65GO:0007231: osmosensory signaling pathway2.41E-03
66GO:0051085: chaperone mediated protein folding requiring cofactor2.41E-03
67GO:0010239: chloroplast mRNA processing2.41E-03
68GO:0006241: CTP biosynthetic process2.41E-03
69GO:0006424: glutamyl-tRNA aminoacylation2.41E-03
70GO:0006165: nucleoside diphosphate phosphorylation2.41E-03
71GO:0006228: UTP biosynthetic process2.41E-03
72GO:0043572: plastid fission2.41E-03
73GO:0009853: photorespiration2.76E-03
74GO:0006418: tRNA aminoacylation for protein translation3.06E-03
75GO:0006542: glutamine biosynthetic process3.24E-03
76GO:0006808: regulation of nitrogen utilization3.24E-03
77GO:0019676: ammonia assimilation cycle3.24E-03
78GO:0071486: cellular response to high light intensity3.24E-03
79GO:0009765: photosynthesis, light harvesting3.24E-03
80GO:0006183: GTP biosynthetic process3.24E-03
81GO:0045727: positive regulation of translation3.24E-03
82GO:0033500: carbohydrate homeostasis3.24E-03
83GO:2000038: regulation of stomatal complex development3.24E-03
84GO:0006730: one-carbon metabolic process3.69E-03
85GO:0031365: N-terminal protein amino acid modification4.15E-03
86GO:0016123: xanthophyll biosynthetic process4.15E-03
87GO:0010375: stomatal complex patterning4.15E-03
88GO:0032543: mitochondrial translation4.15E-03
89GO:0016120: carotene biosynthetic process4.15E-03
90GO:0006869: lipid transport4.70E-03
91GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.14E-03
92GO:0006555: methionine metabolic process5.14E-03
93GO:0006796: phosphate-containing compound metabolic process5.14E-03
94GO:0016554: cytidine to uridine editing5.14E-03
95GO:0010190: cytochrome b6f complex assembly5.14E-03
96GO:0032973: amino acid export5.14E-03
97GO:0009854: oxidative photosynthetic carbon pathway6.21E-03
98GO:0010019: chloroplast-nucleus signaling pathway6.21E-03
99GO:0010555: response to mannitol6.21E-03
100GO:0009955: adaxial/abaxial pattern specification6.21E-03
101GO:0042372: phylloquinone biosynthetic process6.21E-03
102GO:0006458: 'de novo' protein folding6.21E-03
103GO:0010067: procambium histogenesis6.21E-03
104GO:1901259: chloroplast rRNA processing6.21E-03
105GO:0006508: proteolysis6.33E-03
106GO:0043090: amino acid import7.34E-03
107GO:0006457: protein folding8.27E-03
108GO:0048564: photosystem I assembly8.55E-03
109GO:0008610: lipid biosynthetic process8.55E-03
110GO:0009819: drought recovery8.55E-03
111GO:0009642: response to light intensity8.55E-03
112GO:0017004: cytochrome complex assembly9.82E-03
113GO:0009932: cell tip growth9.82E-03
114GO:0006002: fructose 6-phosphate metabolic process9.82E-03
115GO:0019430: removal of superoxide radicals9.82E-03
116GO:0009657: plastid organization9.82E-03
117GO:0010027: thylakoid membrane organization9.94E-03
118GO:0048589: developmental growth1.12E-02
119GO:0010206: photosystem II repair1.12E-02
120GO:0080144: amino acid homeostasis1.12E-02
121GO:0045337: farnesyl diphosphate biosynthetic process1.12E-02
122GO:0033384: geranyl diphosphate biosynthetic process1.12E-02
123GO:0015995: chlorophyll biosynthetic process1.17E-02
124GO:0043067: regulation of programmed cell death1.25E-02
125GO:0006779: porphyrin-containing compound biosynthetic process1.25E-02
126GO:0035999: tetrahydrofolate interconversion1.25E-02
127GO:1900865: chloroplast RNA modification1.25E-02
128GO:0010380: regulation of chlorophyll biosynthetic process1.25E-02
129GO:0009817: defense response to fungus, incompatible interaction1.30E-02
130GO:0000160: phosphorelay signal transduction system1.37E-02
131GO:0043069: negative regulation of programmed cell death1.40E-02
132GO:0009870: defense response signaling pathway, resistance gene-dependent1.40E-02
133GO:0006782: protoporphyrinogen IX biosynthetic process1.40E-02
134GO:0010119: regulation of stomatal movement1.51E-02
135GO:0006816: calcium ion transport1.55E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.55E-02
137GO:0009073: aromatic amino acid family biosynthetic process1.55E-02
138GO:0000272: polysaccharide catabolic process1.55E-02
139GO:0016051: carbohydrate biosynthetic process1.65E-02
140GO:0045037: protein import into chloroplast stroma1.71E-02
141GO:0034599: cellular response to oxidative stress1.73E-02
142GO:0046686: response to cadmium ion1.83E-02
143GO:0050826: response to freezing1.87E-02
144GO:0009725: response to hormone1.87E-02
145GO:0006094: gluconeogenesis1.87E-02
146GO:0005986: sucrose biosynthetic process1.87E-02
147GO:0006839: mitochondrial transport1.89E-02
148GO:0006631: fatty acid metabolic process1.97E-02
149GO:0010223: secondary shoot formation2.04E-02
150GO:0010143: cutin biosynthetic process2.04E-02
151GO:0090351: seedling development2.21E-02
152GO:0070588: calcium ion transmembrane transport2.21E-02
153GO:0005985: sucrose metabolic process2.21E-02
154GO:0006636: unsaturated fatty acid biosynthetic process2.39E-02
155GO:0019344: cysteine biosynthetic process2.57E-02
156GO:0000027: ribosomal large subunit assembly2.57E-02
157GO:0007010: cytoskeleton organization2.57E-02
158GO:0009768: photosynthesis, light harvesting in photosystem I2.76E-02
159GO:0007017: microtubule-based process2.76E-02
160GO:0009736: cytokinin-activated signaling pathway2.88E-02
161GO:0007005: mitochondrion organization3.15E-02
162GO:0080092: regulation of pollen tube growth3.15E-02
163GO:0019748: secondary metabolic process3.15E-02
164GO:0016226: iron-sulfur cluster assembly3.15E-02
165GO:0001944: vasculature development3.35E-02
166GO:0009294: DNA mediated transformation3.35E-02
167GO:0009411: response to UV3.35E-02
168GO:0010089: xylem development3.56E-02
169GO:0006284: base-excision repair3.56E-02
170GO:0042545: cell wall modification3.97E-02
171GO:0010087: phloem or xylem histogenesis3.98E-02
172GO:0042631: cellular response to water deprivation3.98E-02
173GO:0000271: polysaccharide biosynthetic process3.98E-02
174GO:0080022: primary root development3.98E-02
175GO:0042335: cuticle development3.98E-02
176GO:0009793: embryo development ending in seed dormancy4.08E-02
177GO:0010197: polar nucleus fusion4.20E-02
178GO:0045489: pectin biosynthetic process4.20E-02
179GO:0006662: glycerol ether metabolic process4.20E-02
180GO:0019252: starch biosynthetic process4.65E-02
181GO:0000302: response to reactive oxygen species4.88E-02
182GO:0071554: cell wall organization or biogenesis4.88E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
13GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0004822: isoleucine-tRNA ligase activity0.00E+00
17GO:0019843: rRNA binding3.05E-13
18GO:0003735: structural constituent of ribosome5.05E-10
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.30E-08
20GO:0051920: peroxiredoxin activity1.11E-07
21GO:0016209: antioxidant activity3.91E-07
22GO:0005528: FK506 binding1.65E-05
23GO:0004375: glycine dehydrogenase (decarboxylating) activity7.23E-05
24GO:0016149: translation release factor activity, codon specific7.23E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.26E-04
26GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.68E-04
27GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.68E-04
28GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.73E-04
29GO:0004560: alpha-L-fucosidase activity4.73E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.73E-04
31GO:0080132: fatty acid alpha-hydroxylase activity4.73E-04
32GO:0004831: tyrosine-tRNA ligase activity4.73E-04
33GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity4.73E-04
34GO:0051996: squalene synthase activity4.73E-04
35GO:0004033: aldo-keto reductase (NADP) activity5.91E-04
36GO:0003747: translation release factor activity8.62E-04
37GO:0008967: phosphoglycolate phosphatase activity1.02E-03
38GO:0042389: omega-3 fatty acid desaturase activity1.02E-03
39GO:0004618: phosphoglycerate kinase activity1.02E-03
40GO:0010297: heteropolysaccharide binding1.02E-03
41GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.02E-03
42GO:0004047: aminomethyltransferase activity1.02E-03
43GO:0004817: cysteine-tRNA ligase activity1.02E-03
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.02E-03
45GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.02E-03
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.02E-03
47GO:0008047: enzyme activator activity1.18E-03
48GO:0044183: protein binding involved in protein folding1.36E-03
49GO:0016168: chlorophyll binding1.56E-03
50GO:0070402: NADPH binding1.66E-03
51GO:0003979: UDP-glucose 6-dehydrogenase activity1.66E-03
52GO:0005504: fatty acid binding1.66E-03
53GO:0017150: tRNA dihydrouridine synthase activity1.66E-03
54GO:0050734: hydroxycinnamoyltransferase activity1.66E-03
55GO:0003913: DNA photolyase activity1.66E-03
56GO:0002161: aminoacyl-tRNA editing activity1.66E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.66E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.66E-03
59GO:0004089: carbonate dehydratase activity1.77E-03
60GO:0031072: heat shock protein binding1.77E-03
61GO:0051082: unfolded protein binding1.78E-03
62GO:0005509: calcium ion binding2.06E-03
63GO:0004222: metalloendopeptidase activity2.31E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.41E-03
65GO:0008097: 5S rRNA binding2.41E-03
66GO:0004550: nucleoside diphosphate kinase activity2.41E-03
67GO:0004659: prenyltransferase activity3.24E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity3.24E-03
69GO:0045430: chalcone isomerase activity3.24E-03
70GO:1990137: plant seed peroxidase activity3.24E-03
71GO:0043495: protein anchor3.24E-03
72GO:0022891: substrate-specific transmembrane transporter activity4.03E-03
73GO:0004356: glutamate-ammonia ligase activity4.15E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity4.15E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor4.15E-03
76GO:0004812: aminoacyl-tRNA ligase activity4.75E-03
77GO:0042578: phosphoric ester hydrolase activity5.14E-03
78GO:0008200: ion channel inhibitor activity5.14E-03
79GO:0080030: methyl indole-3-acetate esterase activity5.14E-03
80GO:0016208: AMP binding5.14E-03
81GO:0004130: cytochrome-c peroxidase activity5.14E-03
82GO:0016462: pyrophosphatase activity5.14E-03
83GO:0016688: L-ascorbate peroxidase activity5.14E-03
84GO:0004791: thioredoxin-disulfide reductase activity5.96E-03
85GO:0051753: mannan synthase activity6.21E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.21E-03
87GO:0048038: quinone binding6.85E-03
88GO:0008235: metalloexopeptidase activity7.34E-03
89GO:0004427: inorganic diphosphatase activity7.34E-03
90GO:0009881: photoreceptor activity7.34E-03
91GO:0019899: enzyme binding7.34E-03
92GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.81E-03
93GO:0000156: phosphorelay response regulator activity7.81E-03
94GO:0004601: peroxidase activity8.01E-03
95GO:0030599: pectinesterase activity8.15E-03
96GO:0022857: transmembrane transporter activity8.15E-03
97GO:0004564: beta-fructofuranosidase activity8.55E-03
98GO:0016722: oxidoreductase activity, oxidizing metal ions8.84E-03
99GO:0005200: structural constituent of cytoskeleton8.84E-03
100GO:0008237: metallopeptidase activity8.84E-03
101GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.82E-03
102GO:0008289: lipid binding1.03E-02
103GO:0004337: geranyltranstransferase activity1.12E-02
104GO:0004575: sucrose alpha-glucosidase activity1.25E-02
105GO:0004177: aminopeptidase activity1.55E-02
106GO:0004161: dimethylallyltranstransferase activity1.55E-02
107GO:0005089: Rho guanyl-nucleotide exchange factor activity1.55E-02
108GO:0000049: tRNA binding1.71E-02
109GO:0005262: calcium channel activity1.87E-02
110GO:0004565: beta-galactosidase activity1.87E-02
111GO:0004185: serine-type carboxypeptidase activity2.14E-02
112GO:0009055: electron carrier activity2.22E-02
113GO:0051537: 2 iron, 2 sulfur cluster binding2.31E-02
114GO:0031409: pigment binding2.39E-02
115GO:0042802: identical protein binding2.39E-02
116GO:0051536: iron-sulfur cluster binding2.57E-02
117GO:0004857: enzyme inhibitor activity2.57E-02
118GO:0043424: protein histidine kinase binding2.76E-02
119GO:0008324: cation transmembrane transporter activity2.76E-02
120GO:0004176: ATP-dependent peptidase activity2.95E-02
121GO:0033612: receptor serine/threonine kinase binding2.95E-02
122GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.15E-02
123GO:0045330: aspartyl esterase activity3.19E-02
124GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.52E-02
125GO:0003756: protein disulfide isomerase activity3.56E-02
126GO:0047134: protein-disulfide reductase activity3.77E-02
127GO:0005102: receptor binding3.77E-02
128GO:0050662: coenzyme binding4.42E-02
129GO:0004872: receptor activity4.65E-02
130GO:0019901: protein kinase binding4.65E-02
131GO:0016762: xyloglucan:xyloglucosyl transferase activity4.88E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast4.85E-67
5GO:0009570: chloroplast stroma1.80E-44
6GO:0009535: chloroplast thylakoid membrane8.97E-34
7GO:0009941: chloroplast envelope5.99E-33
8GO:0009579: thylakoid6.86E-22
9GO:0009543: chloroplast thylakoid lumen4.14E-16
10GO:0048046: apoplast8.38E-12
11GO:0009534: chloroplast thylakoid1.97E-11
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.20E-10
13GO:0031977: thylakoid lumen6.28E-10
14GO:0005840: ribosome1.15E-08
15GO:0009654: photosystem II oxygen evolving complex1.52E-08
16GO:0010319: stromule5.35E-07
17GO:0019898: extrinsic component of membrane5.09E-06
18GO:0030095: chloroplast photosystem II8.00E-06
19GO:0009505: plant-type cell wall9.20E-06
20GO:0015934: large ribosomal subunit4.23E-05
21GO:0046658: anchored component of plasma membrane6.06E-05
22GO:0005960: glycine cleavage complex7.23E-05
23GO:0000311: plastid large ribosomal subunit1.23E-04
24GO:0042651: thylakoid membrane3.24E-04
25GO:0031225: anchored component of membrane4.26E-04
26GO:0010287: plastoglobule4.72E-04
27GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.73E-04
28GO:0009536: plastid5.02E-04
29GO:0031969: chloroplast membrane7.39E-04
30GO:0009523: photosystem II8.40E-04
31GO:0005618: cell wall9.92E-04
32GO:0000427: plastid-encoded plastid RNA polymerase complex1.02E-03
33GO:0042170: plastid membrane1.02E-03
34GO:0022626: cytosolic ribosome1.38E-03
35GO:0009706: chloroplast inner membrane1.78E-03
36GO:0005775: vacuolar lumen2.41E-03
37GO:0005875: microtubule associated complex2.50E-03
38GO:0016020: membrane2.99E-03
39GO:0010168: ER body5.14E-03
40GO:0009533: chloroplast stromal thylakoid7.34E-03
41GO:0005778: peroxisomal membrane8.84E-03
42GO:0009539: photosystem II reaction center9.82E-03
43GO:0005811: lipid particle9.82E-03
44GO:0045298: tubulin complex1.12E-02
45GO:0005763: mitochondrial small ribosomal subunit1.12E-02
46GO:0016324: apical plasma membrane1.40E-02
47GO:0000325: plant-type vacuole1.51E-02
48GO:0031012: extracellular matrix1.87E-02
49GO:0009508: plastid chromosome1.87E-02
50GO:0030076: light-harvesting complex2.21E-02
51GO:0030176: integral component of endoplasmic reticulum membrane2.21E-02
52GO:0015935: small ribosomal subunit2.95E-02
53GO:0009532: plastid stroma2.95E-02
54GO:0005874: microtubule3.83E-02
55GO:0009522: photosystem I4.42E-02
Gene type



Gene DE type





AT2G41720