co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G26520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	1.10E-05
5	GO:0009416: response to light stimulus	4.98E-05
6	GO:0009913: epidermal cell differentiation	6.00E-05
7	GO:0016042: lipid catabolic process	7.38E-05
8	GO:0042335: cuticle development	9.65E-05
9	GO:0000481: maturation of 5S rRNA	1.82E-04
10	GO:0006106: fumarate metabolic process	1.82E-04
11	GO:0034337: RNA folding	1.82E-04
12	GO:0010206: photosystem II repair	2.17E-04
13	GO:0010205: photoinhibition	2.59E-04
14	GO:0015995: chlorophyll biosynthetic process	3.07E-04
15	GO:0016024: CDP-diacylglycerol biosynthetic process	4.06E-04
16	GO:0010541: acropetal auxin transport	4.10E-04
17	GO:0001736: establishment of planar polarity	4.10E-04
18	GO:0010024: phytochromobilin biosynthetic process	4.10E-04
19	GO:0006898: receptor-mediated endocytosis	4.10E-04
20	GO:0043255: regulation of carbohydrate biosynthetic process	4.10E-04
21	GO:0010115: regulation of abscisic acid biosynthetic process	4.10E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	6.48E-04
23	GO:0006833: water transport	6.48E-04
24	GO:0016045: detection of bacterium	6.69E-04
25	GO:0010359: regulation of anion channel activity	6.69E-04
26	GO:0080055: low-affinity nitrate transport	6.69E-04
27	GO:0006788: heme oxidation	6.69E-04
28	GO:0010160: formation of animal organ boundary	6.69E-04
29	GO:0090391: granum assembly	6.69E-04
30	GO:0006518: peptide metabolic process	6.69E-04
31	GO:0009664: plant-type cell wall organization	8.76E-04
32	GO:1901332: negative regulation of lateral root development	9.55E-04
33	GO:0051513: regulation of monopolar cell growth	9.55E-04
34	GO:0071484: cellular response to light intensity	9.55E-04
35	GO:0080170: hydrogen peroxide transmembrane transport	9.55E-04
36	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.55E-04
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.55E-04
38	GO:0009800: cinnamic acid biosynthetic process	9.55E-04
39	GO:0009650: UV protection	9.55E-04
40	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.02E-03
41	GO:0009735: response to cytokinin	1.14E-03
42	GO:0010109: regulation of photosynthesis	1.27E-03
43	GO:0045727: positive regulation of translation	1.27E-03
44	GO:0034220: ion transmembrane transport	1.29E-03
45	GO:0080167: response to karrikin	1.31E-03
46	GO:0009958: positive gravitropism	1.39E-03
47	GO:0010305: leaf vascular tissue pattern formation	1.39E-03
48	GO:0009733: response to auxin	1.55E-03
49	GO:0007165: signal transduction	1.61E-03
50	GO:0010337: regulation of salicylic acid metabolic process	1.98E-03
51	GO:0006561: proline biosynthetic process	1.98E-03
52	GO:0006751: glutathione catabolic process	1.98E-03
53	GO:0042549: photosystem II stabilization	1.98E-03
54	GO:0006559: L-phenylalanine catabolic process	1.98E-03
55	GO:0006655: phosphatidylglycerol biosynthetic process	1.98E-03
56	GO:0060918: auxin transport	1.98E-03
57	GO:0009828: plant-type cell wall loosening	2.07E-03
58	GO:0009409: response to cold	2.24E-03
59	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.38E-03
60	GO:0010027: thylakoid membrane organization	2.46E-03
61	GO:0006633: fatty acid biosynthetic process	2.63E-03
62	GO:0010444: guard mother cell differentiation	2.80E-03
63	GO:0009772: photosynthetic electron transport in photosystem II	2.80E-03
64	GO:1900056: negative regulation of leaf senescence	2.80E-03
65	GO:0010196: nonphotochemical quenching	2.80E-03
66	GO:1900057: positive regulation of leaf senescence	2.80E-03
67	GO:0006605: protein targeting	3.24E-03
68	GO:0032508: DNA duplex unwinding	3.24E-03
69	GO:0008610: lipid biosynthetic process	3.24E-03
70	GO:0046620: regulation of organ growth	3.24E-03
71	GO:0030091: protein repair	3.24E-03
72	GO:0010311: lateral root formation	3.36E-03
73	GO:0032544: plastid translation	3.71E-03
74	GO:0009734: auxin-activated signaling pathway	3.98E-03
75	GO:0009245: lipid A biosynthetic process	4.20E-03
76	GO:0030001: metal ion transport	4.61E-03
77	GO:0009638: phototropism	4.71E-03
78	GO:0009926: auxin polar transport	5.21E-03
79	GO:0006032: chitin catabolic process	5.24E-03
80	GO:0009688: abscisic acid biosynthetic process	5.24E-03
81	GO:0048829: root cap development	5.24E-03
82	GO:0006949: syncytium formation	5.24E-03
83	GO:0009750: response to fructose	5.79E-03
84	GO:0048765: root hair cell differentiation	5.79E-03
85	GO:0009684: indoleacetic acid biosynthetic process	5.79E-03
86	GO:0046856: phosphatidylinositol dephosphorylation	5.79E-03
87	GO:0010015: root morphogenesis	5.79E-03
88	GO:0000038: very long-chain fatty acid metabolic process	5.79E-03
89	GO:0052544: defense response by callose deposition in cell wall	5.79E-03
90	GO:0008361: regulation of cell size	6.35E-03
91	GO:0010628: positive regulation of gene expression	6.94E-03
92	GO:0006108: malate metabolic process	6.94E-03
93	GO:0006006: glucose metabolic process	6.94E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	6.94E-03
95	GO:0010588: cotyledon vascular tissue pattern formation	6.94E-03
96	GO:0009785: blue light signaling pathway	6.94E-03
97	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.07E-03
98	GO:0010540: basipetal auxin transport	7.55E-03
99	GO:0010143: cutin biosynthetic process	7.55E-03
100	GO:0019253: reductive pentose-phosphate cycle	7.55E-03
101	GO:0010207: photosystem II assembly	7.55E-03
102	GO:0015979: photosynthesis	8.02E-03
103	GO:0071732: cellular response to nitric oxide	8.18E-03
104	GO:0010030: positive regulation of seed germination	8.18E-03
105	GO:0010053: root epidermal cell differentiation	8.18E-03
106	GO:0009825: multidimensional cell growth	8.18E-03
107	GO:0010167: response to nitrate	8.18E-03
108	GO:0010025: wax biosynthetic process	8.82E-03
109	GO:2000377: regulation of reactive oxygen species metabolic process	9.48E-03
110	GO:0009624: response to nematode	1.00E-02
111	GO:0006825: copper ion transport	1.02E-02
112	GO:0007017: microtubule-based process	1.02E-02
113	GO:0051726: regulation of cell cycle	1.06E-02
114	GO:0003333: amino acid transmembrane transport	1.09E-02
115	GO:0016998: cell wall macromolecule catabolic process	1.09E-02
116	GO:0048511: rhythmic process	1.09E-02
117	GO:0031408: oxylipin biosynthetic process	1.09E-02
118	GO:0035428: hexose transmembrane transport	1.16E-02
119	GO:0009411: response to UV	1.23E-02
120	GO:0071369: cellular response to ethylene stimulus	1.23E-02
121	GO:0042127: regulation of cell proliferation	1.31E-02
122	GO:0009306: protein secretion	1.31E-02
123	GO:0048443: stamen development	1.31E-02
124	GO:0006284: base-excision repair	1.31E-02
125	GO:0009651: response to salt stress	1.32E-02
126	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
127	GO:0080022: primary root development	1.46E-02
128	GO:0010087: phloem or xylem histogenesis	1.46E-02
129	GO:0042631: cellular response to water deprivation	1.46E-02
130	GO:0010182: sugar mediated signaling pathway	1.54E-02
131	GO:0046323: glucose import	1.54E-02
132	GO:0071472: cellular response to salt stress	1.54E-02
133	GO:0009414: response to water deprivation	1.59E-02
134	GO:0015986: ATP synthesis coupled proton transport	1.62E-02
135	GO:0042752: regulation of circadian rhythm	1.62E-02
136	GO:0009737: response to abscisic acid	1.70E-02
137	GO:0048825: cotyledon development	1.70E-02
138	GO:0045490: pectin catabolic process	1.74E-02
139	GO:0071554: cell wall organization or biogenesis	1.79E-02
140	GO:0016032: viral process	1.87E-02
141	GO:0071281: cellular response to iron ion	1.96E-02
142	GO:0009639: response to red or far red light	2.05E-02
143	GO:0009627: systemic acquired resistance	2.51E-02
144	GO:0042128: nitrate assimilation	2.51E-02
145	GO:0009826: unidimensional cell growth	2.59E-02
146	GO:0030244: cellulose biosynthetic process	2.81E-02
147	GO:0007049: cell cycle	3.00E-02
148	GO:0010218: response to far red light	3.01E-02
149	GO:0055085: transmembrane transport	3.10E-02
150	GO:0009631: cold acclimation	3.11E-02
151	GO:0048527: lateral root development	3.11E-02
152	GO:0006865: amino acid transport	3.22E-02
153	GO:0009637: response to blue light	3.32E-02
154	GO:0006099: tricarboxylic acid cycle	3.43E-02
155	GO:0010114: response to red light	3.98E-02
156	GO:0009640: photomorphogenesis	3.98E-02
157	GO:0006869: lipid transport	4.36E-02
158	GO:0006855: drug transmembrane transport	4.44E-02
159	GO:0006281: DNA repair	4.89E-02
160	GO:0009408: response to heat	4.89E-02
161	GO:0009809: lignin biosynthetic process	4.92E-02
162	GO:0006364: rRNA processing	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
5	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
6	GO:0016788: hydrolase activity, acting on ester bonds	1.72E-05
7	GO:0005528: FK506 binding	3.69E-05
8	GO:0052689: carboxylic ester hydrolase activity	3.81E-05
9	GO:0004333: fumarate hydratase activity	1.82E-04
10	GO:0045485: omega-6 fatty acid desaturase activity	1.82E-04
11	GO:0004871: signal transducer activity	3.62E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	4.10E-04
13	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.10E-04
14	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.69E-04
15	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.69E-04
16	GO:0045548: phenylalanine ammonia-lyase activity	6.69E-04
17	GO:0090729: toxin activity	6.69E-04
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.01E-04
19	GO:0016851: magnesium chelatase activity	9.55E-04
20	GO:0030570: pectate lyase activity	1.02E-03
21	GO:0004392: heme oxygenase (decyclizing) activity	1.27E-03
22	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.27E-03
23	GO:0010011: auxin binding	1.27E-03
24	GO:0010328: auxin influx transmembrane transporter activity	1.27E-03
25	GO:0052793: pectin acetylesterase activity	1.27E-03
26	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.27E-03
27	GO:0016746: transferase activity, transferring acyl groups	1.54E-03
28	GO:0008725: DNA-3-methyladenine glycosylase activity	1.61E-03
29	GO:0004040: amidase activity	1.61E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.98E-03
31	GO:0004629: phospholipase C activity	1.98E-03
32	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.98E-03
33	GO:0031177: phosphopantetheine binding	1.98E-03
34	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.98E-03
35	GO:0016791: phosphatase activity	2.07E-03
36	GO:0016829: lyase activity	2.18E-03
37	GO:0004435: phosphatidylinositol phospholipase C activity	2.38E-03
38	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.38E-03
39	GO:0004017: adenylate kinase activity	2.38E-03
40	GO:0000035: acyl binding	2.38E-03
41	GO:0015250: water channel activity	2.46E-03
42	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.71E-03
43	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.24E-03
44	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.53E-03
45	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.71E-03
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.01E-03
47	GO:0004568: chitinase activity	5.24E-03
48	GO:0008794: arsenate reductase (glutaredoxin) activity	5.79E-03
49	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.35E-03
50	GO:0004022: alcohol dehydrogenase (NAD) activity	6.94E-03
51	GO:0031072: heat shock protein binding	6.94E-03
52	GO:0004565: beta-galactosidase activity	6.94E-03
53	GO:0010329: auxin efflux transmembrane transporter activity	6.94E-03
54	GO:0008266: poly(U) RNA binding	7.55E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.82E-03
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.82E-03
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.82E-03
58	GO:0004176: ATP-dependent peptidase activity	1.09E-02
59	GO:0019843: rRNA binding	1.25E-02
60	GO:0003756: protein disulfide isomerase activity	1.31E-02
61	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.54E-02
62	GO:0005355: glucose transmembrane transporter activity	1.62E-02
63	GO:0050662: coenzyme binding	1.62E-02
64	GO:0019901: protein kinase binding	1.70E-02
65	GO:0004518: nuclease activity	1.87E-02
66	GO:0005200: structural constituent of cytoskeleton	2.14E-02
67	GO:0016413: O-acetyltransferase activity	2.23E-02
68	GO:0016491: oxidoreductase activity	2.48E-02
69	GO:0030247: polysaccharide binding	2.61E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.81E-02
71	GO:0005096: GTPase activator activity	2.91E-02
72	GO:0003729: mRNA binding	2.96E-02
73	GO:0004222: metalloendopeptidase activity	3.01E-02
74	GO:0003993: acid phosphatase activity	3.43E-02
75	GO:0050661: NADP binding	3.65E-02
76	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
77	GO:0015293: symporter activity	4.32E-02
78	GO:0004722: protein serine/threonine phosphatase activity	4.36E-02
79	GO:0051287: NAD binding	4.56E-02
80	GO:0046872: metal ion binding	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.95E-08
2	GO:0009534: chloroplast thylakoid	1.04E-07
3	GO:0009941: chloroplast envelope	8.69E-07
4	GO:0009579: thylakoid	1.16E-06
5	GO:0009543: chloroplast thylakoid lumen	1.79E-06
6	GO:0009535: chloroplast thylakoid membrane	5.42E-06
7	GO:0005886: plasma membrane	3.88E-05
8	GO:0009515: granal stacked thylakoid	1.82E-04
9	GO:0045239: tricarboxylic acid cycle enzyme complex	1.82E-04
10	GO:0030093: chloroplast photosystem I	4.10E-04
11	GO:0010007: magnesium chelatase complex	6.69E-04
12	GO:0015630: microtubule cytoskeleton	9.55E-04
13	GO:0009531: secondary cell wall	9.55E-04
14	GO:0009570: chloroplast stroma	1.01E-03
15	GO:0031969: chloroplast membrane	1.31E-03
16	GO:0048046: apoplast	1.83E-03
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.98E-03
18	GO:0009986: cell surface	2.80E-03
19	GO:0008180: COP9 signalosome	4.20E-03
20	GO:0031977: thylakoid lumen	4.80E-03
21	GO:0005576: extracellular region	6.05E-03
22	GO:0032040: small-subunit processome	6.35E-03
23	GO:0009505: plant-type cell wall	6.81E-03
24	GO:0009508: plastid chromosome	6.94E-03
25	GO:0030095: chloroplast photosystem II	7.55E-03
26	GO:0016020: membrane	1.01E-02
27	GO:0010287: plastoglobule	1.19E-02
28	GO:0005618: cell wall	1.82E-02
29	GO:0010319: stromule	2.14E-02
30	GO:0009295: nucleoid	2.14E-02
31	GO:0019005: SCF ubiquitin ligase complex	2.81E-02
32	GO:0000502: proteasome complex	4.92E-02