Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
2GO:0006592: ornithine biosynthetic process0.00E+00
3GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
4GO:0006105: succinate metabolic process0.00E+00
5GO:0019484: beta-alanine catabolic process0.00E+00
6GO:0033587: shikimate biosynthetic process0.00E+00
7GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
8GO:0019481: L-alanine catabolic process, by transamination0.00E+00
9GO:0000188: inactivation of MAPK activity0.00E+00
10GO:0048227: plasma membrane to endosome transport0.00E+00
11GO:0016236: macroautophagy0.00E+00
12GO:0042908: xenobiotic transport0.00E+00
13GO:0045185: maintenance of protein location0.00E+00
14GO:0046686: response to cadmium ion2.46E-10
15GO:0006075: (1->3)-beta-D-glucan biosynthetic process2.29E-06
16GO:0048194: Golgi vesicle budding1.03E-05
17GO:0009846: pollen germination6.50E-05
18GO:0008360: regulation of cell shape7.88E-05
19GO:0048367: shoot system development1.07E-04
20GO:0035266: meristem growth1.56E-04
21GO:0098710: guanine import across plasma membrane1.56E-04
22GO:0009450: gamma-aminobutyric acid catabolic process1.56E-04
23GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway1.56E-04
24GO:0055047: generative cell mitosis1.56E-04
25GO:0007292: female gamete generation1.56E-04
26GO:0030242: pexophagy1.56E-04
27GO:1990641: response to iron ion starvation1.56E-04
28GO:0000303: response to superoxide1.56E-04
29GO:0009865: pollen tube adhesion1.56E-04
30GO:0035344: hypoxanthine transport1.56E-04
31GO:0006540: glutamate decarboxylation to succinate1.56E-04
32GO:0010265: SCF complex assembly1.56E-04
33GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport1.56E-04
34GO:0098721: uracil import across plasma membrane1.56E-04
35GO:0098702: adenine import across plasma membrane1.56E-04
36GO:0048589: developmental growth1.73E-04
37GO:0048829: root cap development2.46E-04
38GO:0010311: lateral root formation2.84E-04
39GO:0000266: mitochondrial fission3.29E-04
40GO:0010033: response to organic substance3.55E-04
41GO:0050994: regulation of lipid catabolic process3.55E-04
42GO:0006101: citrate metabolic process3.55E-04
43GO:0007584: response to nutrient3.55E-04
44GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine3.55E-04
45GO:0051788: response to misfolded protein3.55E-04
46GO:0048364: root development3.55E-04
47GO:0019441: tryptophan catabolic process to kynurenine3.55E-04
48GO:0097054: L-glutamate biosynthetic process3.55E-04
49GO:0051258: protein polymerization3.55E-04
50GO:0060919: auxin influx3.55E-04
51GO:0031648: protein destabilization3.55E-04
52GO:0000162: tryptophan biosynthetic process5.28E-04
53GO:0060968: regulation of gene silencing5.82E-04
54GO:0010359: regulation of anion channel activity5.82E-04
55GO:0061158: 3'-UTR-mediated mRNA destabilization5.82E-04
56GO:0010116: positive regulation of abscisic acid biosynthetic process8.33E-04
57GO:2000114: regulation of establishment of cell polarity8.33E-04
58GO:0006020: inositol metabolic process8.33E-04
59GO:1901000: regulation of response to salt stress8.33E-04
60GO:0006537: glutamate biosynthetic process8.33E-04
61GO:0043481: anthocyanin accumulation in tissues in response to UV light8.33E-04
62GO:0006809: nitric oxide biosynthetic process8.33E-04
63GO:0009399: nitrogen fixation8.33E-04
64GO:0072583: clathrin-dependent endocytosis8.33E-04
65GO:0015700: arsenite transport8.33E-04
66GO:0001676: long-chain fatty acid metabolic process8.33E-04
67GO:0006096: glycolytic process9.04E-04
68GO:0009737: response to abscisic acid1.05E-03
69GO:0019676: ammonia assimilation cycle1.10E-03
70GO:0010107: potassium ion import1.10E-03
71GO:0006536: glutamate metabolic process1.10E-03
72GO:0045324: late endosome to vacuole transport1.10E-03
73GO:0009556: microsporogenesis1.30E-03
74GO:0006623: protein targeting to vacuole1.30E-03
75GO:0006097: glyoxylate cycle1.40E-03
76GO:0007029: endoplasmic reticulum organization1.40E-03
77GO:0000380: alternative mRNA splicing, via spliceosome1.40E-03
78GO:0010225: response to UV-C1.40E-03
79GO:0048578: positive regulation of long-day photoperiodism, flowering1.40E-03
80GO:0009630: gravitropism1.48E-03
81GO:0048827: phyllome development1.72E-03
82GO:0048232: male gamete generation1.72E-03
83GO:0043248: proteasome assembly1.72E-03
84GO:0010358: leaf shaping1.72E-03
85GO:1902456: regulation of stomatal opening1.72E-03
86GO:1900425: negative regulation of defense response to bacterium1.72E-03
87GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.72E-03
88GO:0010315: auxin efflux1.72E-03
89GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.72E-03
90GO:0048280: vesicle fusion with Golgi apparatus2.06E-03
91GO:0010029: regulation of seed germination2.11E-03
92GO:0009816: defense response to bacterium, incompatible interaction2.11E-03
93GO:0006888: ER to Golgi vesicle-mediated transport2.34E-03
94GO:0006468: protein phosphorylation2.40E-03
95GO:0046470: phosphatidylcholine metabolic process2.42E-03
96GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.42E-03
97GO:1902074: response to salt2.42E-03
98GO:0006102: isocitrate metabolic process2.80E-03
99GO:0052543: callose deposition in cell wall2.80E-03
100GO:0009819: drought recovery2.80E-03
101GO:0006605: protein targeting2.80E-03
102GO:0010078: maintenance of root meristem identity2.80E-03
103GO:1900150: regulation of defense response to fungus2.80E-03
104GO:0048766: root hair initiation2.80E-03
105GO:0009651: response to salt stress2.84E-03
106GO:0006499: N-terminal protein myristoylation2.85E-03
107GO:0010043: response to zinc ion2.99E-03
108GO:0010119: regulation of stomatal movement2.99E-03
109GO:0009808: lignin metabolic process3.21E-03
110GO:0009827: plant-type cell wall modification3.21E-03
111GO:0006526: arginine biosynthetic process3.21E-03
112GO:0048574: long-day photoperiodism, flowering3.21E-03
113GO:0009867: jasmonic acid mediated signaling pathway3.27E-03
114GO:0006099: tricarboxylic acid cycle3.42E-03
115GO:0046685: response to arsenic-containing substance3.63E-03
116GO:0009821: alkaloid biosynthetic process3.63E-03
117GO:0006098: pentose-phosphate shunt3.63E-03
118GO:0006970: response to osmotic stress4.31E-03
119GO:0007049: cell cycle4.51E-03
120GO:0007064: mitotic sister chromatid cohesion4.52E-03
121GO:0006896: Golgi to vacuole transport4.52E-03
122GO:0006535: cysteine biosynthetic process from serine4.52E-03
123GO:0043069: negative regulation of programmed cell death4.52E-03
124GO:0048765: root hair cell differentiation4.99E-03
125GO:0010015: root morphogenesis4.99E-03
126GO:0018119: peptidyl-cysteine S-nitrosylation4.99E-03
127GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.38E-03
128GO:0006890: retrograde vesicle-mediated transport, Golgi to ER5.48E-03
129GO:0006790: sulfur compound metabolic process5.48E-03
130GO:0012501: programmed cell death5.48E-03
131GO:0016192: vesicle-mediated transport5.50E-03
132GO:0009809: lignin biosynthetic process5.66E-03
133GO:0055046: microgametogenesis5.98E-03
134GO:0010102: lateral root morphogenesis5.98E-03
135GO:0010540: basipetal auxin transport6.50E-03
136GO:0006541: glutamine metabolic process6.50E-03
137GO:0009933: meristem structural organization6.50E-03
138GO:0046854: phosphatidylinositol phosphorylation7.04E-03
139GO:0005985: sucrose metabolic process7.04E-03
140GO:0090351: seedling development7.04E-03
141GO:0034976: response to endoplasmic reticulum stress7.59E-03
142GO:0032259: methylation8.01E-03
143GO:0019344: cysteine biosynthetic process8.16E-03
144GO:2000377: regulation of reactive oxygen species metabolic process8.16E-03
145GO:0030433: ubiquitin-dependent ERAD pathway9.96E-03
146GO:0031348: negative regulation of defense response9.96E-03
147GO:0080092: regulation of pollen tube growth9.96E-03
148GO:0009845: seed germination1.09E-02
149GO:0010584: pollen exine formation1.12E-02
150GO:0009306: protein secretion1.12E-02
151GO:0009561: megagametogenesis1.12E-02
152GO:0009873: ethylene-activated signaling pathway1.17E-02
153GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.19E-02
154GO:0042147: retrograde transport, endosome to Golgi1.19E-02
155GO:0006979: response to oxidative stress1.20E-02
156GO:0010087: phloem or xylem histogenesis1.25E-02
157GO:0010118: stomatal movement1.25E-02
158GO:0042335: cuticle development1.25E-02
159GO:0009734: auxin-activated signaling pathway1.31E-02
160GO:0010154: fruit development1.32E-02
161GO:0042752: regulation of circadian rhythm1.39E-02
162GO:0010150: leaf senescence1.40E-02
163GO:0010183: pollen tube guidance1.46E-02
164GO:0071554: cell wall organization or biogenesis1.54E-02
165GO:0006891: intra-Golgi vesicle-mediated transport1.54E-02
166GO:0006635: fatty acid beta-oxidation1.54E-02
167GO:0010193: response to ozone1.54E-02
168GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.56E-02
169GO:0007264: small GTPase mediated signal transduction1.61E-02
170GO:0010583: response to cyclopentenone1.61E-02
171GO:0016032: viral process1.61E-02
172GO:0030163: protein catabolic process1.68E-02
173GO:0015031: protein transport1.70E-02
174GO:0009555: pollen development1.75E-02
175GO:0006914: autophagy1.76E-02
176GO:0006904: vesicle docking involved in exocytosis1.84E-02
177GO:0051607: defense response to virus1.92E-02
178GO:0016579: protein deubiquitination1.92E-02
179GO:0001666: response to hypoxia1.99E-02
180GO:0006508: proteolysis2.19E-02
181GO:0016311: dephosphorylation2.32E-02
182GO:0009860: pollen tube growth2.33E-02
183GO:0055085: transmembrane transport2.37E-02
184GO:0048767: root hair elongation2.50E-02
185GO:0048366: leaf development2.55E-02
186GO:0009407: toxin catabolic process2.58E-02
187GO:0006511: ubiquitin-dependent protein catabolic process2.58E-02
188GO:0009631: cold acclimation2.67E-02
189GO:0080167: response to karrikin2.69E-02
190GO:0045087: innate immune response2.85E-02
191GO:0006631: fatty acid metabolic process3.22E-02
192GO:0055114: oxidation-reduction process3.40E-02
193GO:0009926: auxin polar transport3.42E-02
194GO:0008283: cell proliferation3.42E-02
195GO:0009965: leaf morphogenesis3.71E-02
196GO:0006855: drug transmembrane transport3.81E-02
197GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.91E-02
198GO:0009408: response to heat3.96E-02
199GO:0009414: response to water deprivation4.10E-02
200GO:0009585: red, far-red light phototransduction4.22E-02
201GO:0010224: response to UV-B4.33E-02
202GO:0006417: regulation of translation4.54E-02
203GO:0009733: response to auxin4.86E-02
RankGO TermAdjusted P value
1GO:0016504: peptidase activator activity0.00E+00
2GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
3GO:0005548: phospholipid transporter activity0.00E+00
4GO:0070577: lysine-acetylated histone binding0.00E+00
5GO:0015930: glutamate synthase activity0.00E+00
6GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
7GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
8GO:0008777: acetylornithine deacetylase activity0.00E+00
9GO:0004012: phospholipid-translocating ATPase activity6.19E-07
10GO:0003843: 1,3-beta-D-glucan synthase activity2.29E-06
11GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.22E-05
12GO:0000287: magnesium ion binding9.46E-05
13GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity1.56E-04
14GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity1.56E-04
15GO:0004425: indole-3-glycerol-phosphate synthase activity1.56E-04
16GO:0030623: U5 snRNA binding1.56E-04
17GO:0015208: guanine transmembrane transporter activity1.56E-04
18GO:0071992: phytochelatin transmembrane transporter activity1.56E-04
19GO:0015294: solute:cation symporter activity1.56E-04
20GO:0015207: adenine transmembrane transporter activity1.56E-04
21GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.56E-04
22GO:0003867: 4-aminobutyrate transaminase activity1.56E-04
23GO:0016041: glutamate synthase (ferredoxin) activity1.56E-04
24GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity1.56E-04
25GO:0004743: pyruvate kinase activity2.08E-04
26GO:0030955: potassium ion binding2.08E-04
27GO:0004674: protein serine/threonine kinase activity2.33E-04
28GO:0008559: xenobiotic-transporting ATPase activity2.86E-04
29GO:0003994: aconitate hydratase activity3.55E-04
30GO:0004061: arylformamidase activity3.55E-04
31GO:0015036: disulfide oxidoreductase activity3.55E-04
32GO:0005093: Rab GDP-dissociation inhibitor activity5.82E-04
33GO:0005047: signal recognition particle binding5.82E-04
34GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity5.82E-04
35GO:0016805: dipeptidase activity5.82E-04
36GO:0005524: ATP binding6.82E-04
37GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity8.33E-04
38GO:0016656: monodehydroascorbate reductase (NADH) activity8.33E-04
39GO:0004834: tryptophan synthase activity1.10E-03
40GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.10E-03
41GO:0043015: gamma-tubulin binding1.10E-03
42GO:0015210: uracil transmembrane transporter activity1.10E-03
43GO:0070628: proteasome binding1.10E-03
44GO:0003995: acyl-CoA dehydrogenase activity1.10E-03
45GO:0010328: auxin influx transmembrane transporter activity1.10E-03
46GO:0030276: clathrin binding1.13E-03
47GO:0004356: glutamate-ammonia ligase activity1.40E-03
48GO:0017070: U6 snRNA binding1.40E-03
49GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.40E-03
50GO:0003997: acyl-CoA oxidase activity1.40E-03
51GO:0005496: steroid binding1.40E-03
52GO:0051538: 3 iron, 4 sulfur cluster binding1.40E-03
53GO:0036402: proteasome-activating ATPase activity1.72E-03
54GO:0051213: dioxygenase activity1.99E-03
55GO:0004124: cysteine synthase activity2.06E-03
56GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.06E-03
57GO:0004602: glutathione peroxidase activity2.06E-03
58GO:0003950: NAD+ ADP-ribosyltransferase activity2.06E-03
59GO:0008017: microtubule binding2.39E-03
60GO:0008235: metalloexopeptidase activity2.42E-03
61GO:0043295: glutathione binding2.42E-03
62GO:0004620: phospholipase activity2.42E-03
63GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.46E-03
64GO:0005096: GTPase activator activity2.72E-03
65GO:0004714: transmembrane receptor protein tyrosine kinase activity2.80E-03
66GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.06E-03
67GO:0004630: phospholipase D activity3.21E-03
68GO:0005267: potassium channel activity3.21E-03
69GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.21E-03
70GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.27E-03
71GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity3.63E-03
72GO:0008171: O-methyltransferase activity4.52E-03
73GO:0004713: protein tyrosine kinase activity4.52E-03
74GO:0005198: structural molecule activity4.73E-03
75GO:0004177: aminopeptidase activity4.99E-03
76GO:0061630: ubiquitin protein ligase activity5.50E-03
77GO:0004022: alcohol dehydrogenase (NAD) activity5.98E-03
78GO:0010329: auxin efflux transmembrane transporter activity5.98E-03
79GO:0004175: endopeptidase activity6.50E-03
80GO:0004190: aspartic-type endopeptidase activity7.04E-03
81GO:0017025: TBP-class protein binding7.04E-03
82GO:0005516: calmodulin binding7.58E-03
83GO:0004725: protein tyrosine phosphatase activity7.59E-03
84GO:0043130: ubiquitin binding8.16E-03
85GO:0003924: GTPase activity8.46E-03
86GO:0036459: thiol-dependent ubiquitinyl hydrolase activity9.34E-03
87GO:0003727: single-stranded RNA binding1.12E-02
88GO:0003756: protein disulfide isomerase activity1.12E-02
89GO:0030170: pyridoxal phosphate binding1.12E-02
90GO:0016853: isomerase activity1.39E-02
91GO:0004872: receptor activity1.46E-02
92GO:0016887: ATPase activity1.48E-02
93GO:0004843: thiol-dependent ubiquitin-specific protease activity1.54E-02
94GO:0005515: protein binding1.65E-02
95GO:0016301: kinase activity1.68E-02
96GO:0016491: oxidoreductase activity1.80E-02
97GO:0008237: metallopeptidase activity1.84E-02
98GO:0016413: O-acetyltransferase activity1.92E-02
99GO:0008168: methyltransferase activity2.09E-02
100GO:0004672: protein kinase activity2.11E-02
101GO:0009931: calcium-dependent protein serine/threonine kinase activity2.16E-02
102GO:0004683: calmodulin-dependent protein kinase activity2.24E-02
103GO:0050660: flavin adenine dinucleotide binding2.51E-02
104GO:0030145: manganese ion binding2.67E-02
105GO:0050897: cobalt ion binding2.67E-02
106GO:0005507: copper ion binding2.73E-02
107GO:0000149: SNARE binding3.04E-02
108GO:0051539: 4 iron, 4 sulfur cluster binding3.13E-02
109GO:0005525: GTP binding3.27E-02
110GO:0004364: glutathione transferase activity3.32E-02
111GO:0005484: SNAP receptor activity3.42E-02
112GO:0043621: protein self-association3.61E-02
113GO:0005509: calcium ion binding3.82E-02
114GO:0015171: amino acid transmembrane transporter activity4.54E-02
115GO:0031625: ubiquitin protein ligase binding4.54E-02
116GO:0005215: transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0071561: nucleus-vacuole junction0.00E+00
3GO:0005829: cytosol2.66E-09
4GO:0000148: 1,3-beta-D-glucan synthase complex2.29E-06
5GO:0005886: plasma membrane3.68E-06
6GO:0009506: plasmodesma1.53E-05
7GO:0030126: COPI vesicle coat3.14E-05
8GO:0005770: late endosome7.88E-05
9GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I1.56E-04
10GO:0045334: clathrin-coated endocytic vesicle1.56E-04
11GO:0045252: oxoglutarate dehydrogenase complex1.56E-04
12GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II1.56E-04
13GO:0005773: vacuole2.94E-04
14GO:0031314: extrinsic component of mitochondrial inner membrane3.55E-04
15GO:0005782: peroxisomal matrix5.82E-04
16GO:0031461: cullin-RING ubiquitin ligase complex8.33E-04
17GO:0005774: vacuolar membrane9.69E-04
18GO:0009504: cell plate1.30E-03
19GO:0005737: cytoplasm1.41E-03
20GO:0009524: phragmoplast1.61E-03
21GO:0030140: trans-Golgi network transport vesicle1.72E-03
22GO:0016363: nuclear matrix2.06E-03
23GO:0031597: cytosolic proteasome complex2.06E-03
24GO:0016020: membrane2.21E-03
25GO:0000794: condensed nuclear chromosome2.42E-03
26GO:0031595: nuclear proteasome complex2.42E-03
27GO:0000151: ubiquitin ligase complex2.59E-03
28GO:0012507: ER to Golgi transport vesicle membrane2.80E-03
29GO:0000325: plant-type vacuole2.99E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.21E-03
31GO:0005819: spindle3.57E-03
32GO:0005794: Golgi apparatus3.62E-03
33GO:0031902: late endosome membrane3.88E-03
34GO:0008540: proteasome regulatory particle, base subcomplex4.06E-03
35GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.41E-03
36GO:0016602: CCAAT-binding factor complex5.98E-03
37GO:0005789: endoplasmic reticulum membrane6.59E-03
38GO:0016021: integral component of membrane7.03E-03
39GO:0005802: trans-Golgi network8.33E-03
40GO:0005839: proteasome core complex9.34E-03
41GO:0030136: clathrin-coated vesicle1.19E-02
42GO:0009536: plastid1.62E-02
43GO:0005788: endoplasmic reticulum lumen2.07E-02
44GO:0005777: peroxisome2.09E-02
45GO:0005643: nuclear pore2.41E-02
46GO:0005874: microtubule2.60E-02
47GO:0009570: chloroplast stroma3.11E-02
48GO:0031201: SNARE complex3.22E-02
49GO:0005783: endoplasmic reticulum3.49E-02
50GO:0031966: mitochondrial membrane4.01E-02
51GO:0000502: proteasome complex4.22E-02
52GO:0005635: nuclear envelope4.43E-02
53GO:0005681: spliceosomal complex4.75E-02
Gene type



Gene DE type