co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0042493: response to drug	0.00E+00
10	GO:0042371: vitamin K biosynthetic process	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0070125: mitochondrial translational elongation	0.00E+00
13	GO:0006412: translation	1.29E-16
14	GO:0032544: plastid translation	2.16E-16
15	GO:0042254: ribosome biogenesis	6.99E-11
16	GO:0009658: chloroplast organization	1.11E-09
17	GO:0010027: thylakoid membrane organization	2.20E-07
18	GO:0010196: nonphotochemical quenching	8.28E-06
19	GO:0015979: photosynthesis	1.07E-05
20	GO:0090391: granum assembly	2.05E-05
21	GO:0009735: response to cytokinin	2.06E-05
22	GO:0010207: photosystem II assembly	9.92E-05
23	GO:0010236: plastoquinone biosynthetic process	1.25E-04
24	GO:0015995: chlorophyll biosynthetic process	1.28E-04
25	GO:0042372: phylloquinone biosynthetic process	2.44E-04
26	GO:1901259: chloroplast rRNA processing	2.44E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	3.60E-04
28	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.60E-04
29	GO:0060627: regulation of vesicle-mediated transport	3.60E-04
30	GO:0043489: RNA stabilization	3.60E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	3.60E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	3.60E-04
33	GO:0042759: long-chain fatty acid biosynthetic process	3.60E-04
34	GO:0000413: protein peptidyl-prolyl isomerization	3.78E-04
35	GO:0045454: cell redox homeostasis	4.64E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.83E-04
37	GO:0034755: iron ion transmembrane transport	7.83E-04
38	GO:0009773: photosynthetic electron transport in photosystem I	9.22E-04
39	GO:0042742: defense response to bacterium	9.29E-04
40	GO:0006954: inflammatory response	1.27E-03
41	GO:0006518: peptide metabolic process	1.27E-03
42	GO:0010020: chloroplast fission	1.34E-03
43	GO:0010239: chloroplast mRNA processing	1.83E-03
44	GO:0006241: CTP biosynthetic process	1.83E-03
45	GO:0019048: modulation by virus of host morphology or physiology	1.83E-03
46	GO:0009650: UV protection	1.83E-03
47	GO:0006165: nucleoside diphosphate phosphorylation	1.83E-03
48	GO:0006228: UTP biosynthetic process	1.83E-03
49	GO:0031048: chromatin silencing by small RNA	1.83E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.83E-03
51	GO:0046739: transport of virus in multicellular host	1.83E-03
52	GO:0010088: phloem development	1.83E-03
53	GO:0043572: plastid fission	1.83E-03
54	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.83E-03
55	GO:2001141: regulation of RNA biosynthetic process	1.83E-03
56	GO:0007231: osmosensory signaling pathway	1.83E-03
57	GO:0061077: chaperone-mediated protein folding	2.25E-03
58	GO:0006869: lipid transport	2.28E-03
59	GO:0009765: photosynthesis, light harvesting	2.45E-03
60	GO:0006183: GTP biosynthetic process	2.45E-03
61	GO:2000122: negative regulation of stomatal complex development	2.45E-03
62	GO:0033500: carbohydrate homeostasis	2.45E-03
63	GO:0000919: cell plate assembly	2.45E-03
64	GO:0051567: histone H3-K9 methylation	2.45E-03
65	GO:0042991: transcription factor import into nucleus	2.45E-03
66	GO:0010037: response to carbon dioxide	2.45E-03
67	GO:0009956: radial pattern formation	2.45E-03
68	GO:0015976: carbon utilization	2.45E-03
69	GO:0009411: response to UV	2.69E-03
70	GO:0048359: mucilage metabolic process involved in seed coat development	3.14E-03
71	GO:0016120: carotene biosynthetic process	3.14E-03
72	GO:0032543: mitochondrial translation	3.14E-03
73	GO:0006564: L-serine biosynthetic process	3.14E-03
74	GO:0031365: N-terminal protein amino acid modification	3.14E-03
75	GO:0016123: xanthophyll biosynthetic process	3.14E-03
76	GO:0042335: cuticle development	3.42E-03
77	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.88E-03
78	GO:0032973: amino acid export	3.88E-03
79	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.88E-03
80	GO:0016458: gene silencing	3.88E-03
81	GO:0010405: arabinogalactan protein metabolic process	3.88E-03
82	GO:0042549: photosystem II stabilization	3.88E-03
83	GO:0009955: adaxial/abaxial pattern specification	4.67E-03
84	GO:0017148: negative regulation of translation	4.67E-03
85	GO:0006694: steroid biosynthetic process	4.67E-03
86	GO:0010189: vitamin E biosynthetic process	4.67E-03
87	GO:0010019: chloroplast-nucleus signaling pathway	4.67E-03
88	GO:0010555: response to mannitol	4.67E-03
89	GO:0009772: photosynthetic electron transport in photosystem II	5.52E-03
90	GO:0043090: amino acid import	5.52E-03
91	GO:0071669: plant-type cell wall organization or biogenesis	5.52E-03
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.26E-03
93	GO:0009642: response to light intensity	6.41E-03
94	GO:0030091: protein repair	6.41E-03
95	GO:0006353: DNA-templated transcription, termination	6.41E-03
96	GO:0009793: embryo development ending in seed dormancy	6.81E-03
97	GO:0071482: cellular response to light stimulus	7.36E-03
98	GO:0010497: plasmodesmata-mediated intercellular transport	7.36E-03
99	GO:0006526: arginine biosynthetic process	7.36E-03
100	GO:0009808: lignin metabolic process	7.36E-03
101	GO:0080144: amino acid homeostasis	8.35E-03
102	GO:0006783: heme biosynthetic process	8.35E-03
103	GO:0015780: nucleotide-sugar transport	8.35E-03
104	GO:0009790: embryo development	8.46E-03
105	GO:0009817: defense response to fungus, incompatible interaction	8.60E-03
106	GO:0018298: protein-chromophore linkage	8.60E-03
107	GO:0006779: porphyrin-containing compound biosynthetic process	9.38E-03
108	GO:0009631: cold acclimation	9.96E-03
109	GO:0007568: aging	9.96E-03
110	GO:0006782: protoporphyrinogen IX biosynthetic process	1.05E-02
111	GO:0030422: production of siRNA involved in RNA interference	1.05E-02
112	GO:0006949: syncytium formation	1.05E-02
113	GO:0009637: response to blue light	1.09E-02
114	GO:0034599: cellular response to oxidative stress	1.14E-02
115	GO:0010015: root morphogenesis	1.16E-02
116	GO:0006816: calcium ion transport	1.16E-02
117	GO:0043085: positive regulation of catalytic activity	1.16E-02
118	GO:0006415: translational termination	1.16E-02
119	GO:0006879: cellular iron ion homeostasis	1.16E-02
120	GO:0006352: DNA-templated transcription, initiation	1.16E-02
121	GO:0018119: peptidyl-cysteine S-nitrosylation	1.16E-02
122	GO:0006006: glucose metabolic process	1.40E-02
123	GO:0009725: response to hormone	1.40E-02
124	GO:0010114: response to red light	1.41E-02
125	GO:0055114: oxidation-reduction process	1.47E-02
126	GO:0042546: cell wall biogenesis	1.47E-02
127	GO:0009933: meristem structural organization	1.52E-02
128	GO:0019253: reductive pentose-phosphate cycle	1.52E-02
129	GO:0009409: response to cold	1.59E-02
130	GO:0070588: calcium ion transmembrane transport	1.65E-02
131	GO:0010025: wax biosynthetic process	1.78E-02
132	GO:0009736: cytokinin-activated signaling pathway	1.91E-02
133	GO:0006813: potassium ion transport	1.91E-02
134	GO:0019344: cysteine biosynthetic process	1.92E-02
135	GO:0000027: ribosomal large subunit assembly	1.92E-02
136	GO:0007010: cytoskeleton organization	1.92E-02
137	GO:0006418: tRNA aminoacylation for protein translation	2.06E-02
138	GO:0009768: photosynthesis, light harvesting in photosystem I	2.06E-02
139	GO:0006306: DNA methylation	2.20E-02
140	GO:0030245: cellulose catabolic process	2.35E-02
141	GO:0016226: iron-sulfur cluster assembly	2.35E-02
142	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.50E-02
143	GO:0071555: cell wall organization	2.58E-02
144	GO:0019722: calcium-mediated signaling	2.65E-02
145	GO:0009306: protein secretion	2.65E-02
146	GO:0016117: carotenoid biosynthetic process	2.81E-02
147	GO:0000271: polysaccharide biosynthetic process	2.97E-02
148	GO:0006520: cellular amino acid metabolic process	3.13E-02
149	GO:0010305: leaf vascular tissue pattern formation	3.13E-02
150	GO:0006662: glycerol ether metabolic process	3.13E-02
151	GO:0006342: chromatin silencing	3.13E-02
152	GO:0007018: microtubule-based movement	3.30E-02
153	GO:0048825: cotyledon development	3.47E-02
154	GO:0002229: defense response to oomycetes	3.64E-02
155	GO:0000302: response to reactive oxygen species	3.64E-02
156	GO:0016132: brassinosteroid biosynthetic process	3.64E-02
157	GO:0006457: protein folding	3.70E-02
158	GO:0016042: lipid catabolic process	3.75E-02
159	GO:0010583: response to cyclopentenone	3.81E-02
160	GO:0009828: plant-type cell wall loosening	4.17E-02
161	GO:0071805: potassium ion transmembrane transport	4.35E-02
162	GO:0007267: cell-cell signaling	4.35E-02
163	GO:0006413: translational initiation	4.36E-02
164	GO:0051607: defense response to virus	4.54E-02
165	GO:0009451: RNA modification	4.78E-02
166	GO:0006810: transport	4.84E-02
167	GO:0009816: defense response to bacterium, incompatible interaction	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
9	GO:0047661: amino-acid racemase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
12	GO:0050614: delta24-sterol reductase activity	0.00E+00
13	GO:0019843: rRNA binding	6.22E-24
14	GO:0003735: structural constituent of ribosome	6.49E-20
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.03E-10
16	GO:0051920: peroxiredoxin activity	4.38E-08
17	GO:0016209: antioxidant activity	1.55E-07
18	GO:0005528: FK506 binding	1.67E-07
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.05E-05
20	GO:0043023: ribosomal large subunit binding	4.51E-05
21	GO:0051753: mannan synthase activity	2.44E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.60E-04
23	GO:0004655: porphobilinogen synthase activity	3.60E-04
24	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.60E-04
25	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.60E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.83E-04
27	GO:0016630: protochlorophyllide reductase activity	7.83E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.83E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	7.83E-04
30	GO:0002161: aminoacyl-tRNA editing activity	1.27E-03
31	GO:0030267: glyoxylate reductase (NADP) activity	1.27E-03
32	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.27E-03
33	GO:0008266: poly(U) RNA binding	1.34E-03
34	GO:0004222: metalloendopeptidase activity	1.38E-03
35	GO:0016149: translation release factor activity, codon specific	1.83E-03
36	GO:0035197: siRNA binding	1.83E-03
37	GO:0016851: magnesium chelatase activity	1.83E-03
38	GO:0004550: nucleoside diphosphate kinase activity	1.83E-03
39	GO:0008097: 5S rRNA binding	1.83E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	1.83E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.45E-03
42	GO:0016987: sigma factor activity	2.45E-03
43	GO:0046527: glucosyltransferase activity	2.45E-03
44	GO:0043495: protein anchor	2.45E-03
45	GO:0004659: prenyltransferase activity	2.45E-03
46	GO:0001053: plastid sigma factor activity	2.45E-03
47	GO:0051287: NAD binding	2.90E-03
48	GO:0003959: NADPH dehydrogenase activity	3.14E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.14E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.88E-03
51	GO:0004130: cytochrome-c peroxidase activity	3.88E-03
52	GO:0016208: AMP binding	3.88E-03
53	GO:0016688: L-ascorbate peroxidase activity	3.88E-03
54	GO:0004601: peroxidase activity	4.29E-03
55	GO:0016788: hydrolase activity, acting on ester bonds	4.41E-03
56	GO:0005507: copper ion binding	4.44E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.67E-03
58	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.67E-03
59	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.67E-03
60	GO:0008289: lipid binding	5.01E-03
61	GO:0008235: metalloexopeptidase activity	5.52E-03
62	GO:0019899: enzyme binding	5.52E-03
63	GO:0008237: metallopeptidase activity	5.86E-03
64	GO:0052747: sinapyl alcohol dehydrogenase activity	6.41E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
66	GO:0052689: carboxylic ester hydrolase activity	6.92E-03
67	GO:0016168: chlorophyll binding	6.96E-03
68	GO:0003747: translation release factor activity	8.35E-03
69	GO:0005381: iron ion transmembrane transporter activity	9.38E-03
70	GO:0008047: enzyme activator activity	1.05E-02
71	GO:0003746: translation elongation factor activity	1.09E-02
72	GO:0008017: microtubule binding	1.11E-02
73	GO:0004177: aminopeptidase activity	1.16E-02
74	GO:0009055: electron carrier activity	1.20E-02
75	GO:0004521: endoribonuclease activity	1.28E-02
76	GO:0000049: tRNA binding	1.28E-02
77	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.28E-02
78	GO:0004089: carbonate dehydratase activity	1.40E-02
79	GO:0031072: heat shock protein binding	1.40E-02
80	GO:0005262: calcium channel activity	1.40E-02
81	GO:0042802: identical protein binding	1.42E-02
82	GO:0043621: protein self-association	1.53E-02
83	GO:0031409: pigment binding	1.78E-02
84	GO:0051536: iron-sulfur cluster binding	1.92E-02
85	GO:0015079: potassium ion transmembrane transporter activity	2.06E-02
86	GO:0008324: cation transmembrane transporter activity	2.06E-02
87	GO:0003777: microtubule motor activity	2.11E-02
88	GO:0004176: ATP-dependent peptidase activity	2.20E-02
89	GO:0030570: pectate lyase activity	2.50E-02
90	GO:0008810: cellulase activity	2.50E-02
91	GO:0016760: cellulose synthase (UDP-forming) activity	2.50E-02
92	GO:0022891: substrate-specific transmembrane transporter activity	2.50E-02
93	GO:0008514: organic anion transmembrane transporter activity	2.65E-02
94	GO:0047134: protein-disulfide reductase activity	2.81E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	2.81E-02
96	GO:0008080: N-acetyltransferase activity	3.13E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	3.30E-02
98	GO:0004872: receptor activity	3.47E-02
99	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.64E-02
100	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.81E-02
101	GO:0003924: GTPase activity	3.89E-02
102	GO:0000156: phosphorelay response regulator activity	3.99E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.99E-02
104	GO:0016491: oxidoreductase activity	4.06E-02
105	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.35E-02
106	GO:0016597: amino acid binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	1.16E-57
4	GO:0009570: chloroplast stroma	1.94E-47
5	GO:0009941: chloroplast envelope	6.43E-36
6	GO:0009579: thylakoid	1.74E-25
7	GO:0009535: chloroplast thylakoid membrane	8.69E-24
8	GO:0005840: ribosome	4.86E-21
9	GO:0009543: chloroplast thylakoid lumen	2.22E-14
10	GO:0009534: chloroplast thylakoid	5.53E-14
11	GO:0031977: thylakoid lumen	6.79E-14
12	GO:0048046: apoplast	5.16E-07
13	GO:0046658: anchored component of plasma membrane	1.70E-06
14	GO:0009536: plastid	3.19E-05
15	GO:0031969: chloroplast membrane	5.47E-05
16	GO:0000311: plastid large ribosomal subunit	6.72E-05
17	GO:0031225: anchored component of membrane	1.27E-04
18	GO:0016020: membrane	1.47E-04
19	GO:0009505: plant-type cell wall	1.49E-04
20	GO:0009706: chloroplast inner membrane	1.55E-04
21	GO:0015934: large ribosomal subunit	1.98E-04
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.60E-04
23	GO:0009547: plastid ribosome	3.60E-04
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.82E-04
25	GO:0010319: stromule	7.57E-04
26	GO:0010007: magnesium chelatase complex	1.27E-03
27	GO:0030095: chloroplast photosystem II	1.34E-03
28	GO:0005719: nuclear euchromatin	1.83E-03
29	GO:0009654: photosystem II oxygen evolving complex	2.05E-03
30	GO:0042651: thylakoid membrane	2.05E-03
31	GO:0005618: cell wall	4.10E-03
32	GO:0019898: extrinsic component of membrane	4.25E-03
33	GO:0009533: chloroplast stromal thylakoid	5.52E-03
34	GO:0005874: microtubule	5.64E-03
35	GO:0030529: intracellular ribonucleoprotein complex	6.58E-03
36	GO:0022626: cytosolic ribosome	7.10E-03
37	GO:0005763: mitochondrial small ribosomal subunit	8.35E-03
38	GO:0015030: Cajal body	9.38E-03
39	GO:0031012: extracellular matrix	1.40E-02
40	GO:0000312: plastid small ribosomal subunit	1.52E-02
41	GO:0030076: light-harvesting complex	1.65E-02
42	GO:0005875: microtubule associated complex	1.78E-02
43	GO:0015935: small ribosomal subunit	2.20E-02
44	GO:0009532: plastid stroma	2.20E-02
45	GO:0022625: cytosolic large ribosomal subunit	2.55E-02
46	GO:0005886: plasma membrane	2.58E-02
47	GO:0005871: kinesin complex	2.81E-02
48	GO:0010287: plastoglobule	3.22E-02
49	GO:0009522: photosystem I	3.30E-02
50	GO:0009523: photosystem II	3.47E-02
51	GO:0009295: nucleoid	4.35E-02
52	GO:0005778: peroxisomal membrane	4.35E-02