co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0006412: translation	2.61E-11
8	GO:0032544: plastid translation	1.17E-08
9	GO:0015995: chlorophyll biosynthetic process	2.51E-07
10	GO:0009658: chloroplast organization	3.22E-07
11	GO:0042254: ribosome biogenesis	3.44E-07
12	GO:0015979: photosynthesis	1.08E-06
13	GO:0090391: granum assembly	3.63E-06
14	GO:0010027: thylakoid membrane organization	6.47E-06
15	GO:0010207: photosystem II assembly	1.17E-05
16	GO:0010196: nonphotochemical quenching	7.34E-05
17	GO:1904966: positive regulation of vitamin E biosynthetic process	1.40E-04
18	GO:1904964: positive regulation of phytol biosynthetic process	1.40E-04
19	GO:0042371: vitamin K biosynthetic process	1.40E-04
20	GO:0071588: hydrogen peroxide mediated signaling pathway	1.40E-04
21	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-04
22	GO:0006568: tryptophan metabolic process	3.20E-04
23	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.20E-04
24	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.20E-04
25	GO:0034755: iron ion transmembrane transport	3.20E-04
26	GO:0006000: fructose metabolic process	5.26E-04
27	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.26E-04
28	GO:0006954: inflammatory response	5.26E-04
29	GO:0006418: tRNA aminoacylation for protein translation	5.53E-04
30	GO:2001141: regulation of RNA biosynthetic process	7.53E-04
31	GO:0000413: protein peptidyl-prolyl isomerization	9.10E-04
32	GO:0015994: chlorophyll metabolic process	9.98E-04
33	GO:0006457: protein folding	1.09E-03
34	GO:0032543: mitochondrial translation	1.26E-03
35	GO:0006564: L-serine biosynthetic process	1.26E-03
36	GO:0010236: plastoquinone biosynthetic process	1.26E-03
37	GO:0045038: protein import into chloroplast thylakoid membrane	1.26E-03
38	GO:0031365: N-terminal protein amino acid modification	1.26E-03
39	GO:0042549: photosystem II stabilization	1.55E-03
40	GO:0000470: maturation of LSU-rRNA	1.55E-03
41	GO:0032973: amino acid export	1.55E-03
42	GO:0006655: phosphatidylglycerol biosynthetic process	1.55E-03
43	GO:0010019: chloroplast-nucleus signaling pathway	1.86E-03
44	GO:0042372: phylloquinone biosynthetic process	1.86E-03
45	GO:0006400: tRNA modification	2.18E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	2.18E-03
47	GO:0043090: amino acid import	2.18E-03
48	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.18E-03
49	GO:0048564: photosystem I assembly	2.52E-03
50	GO:0009735: response to cytokinin	2.80E-03
51	GO:0006002: fructose 6-phosphate metabolic process	2.88E-03
52	GO:0071482: cellular response to light stimulus	2.88E-03
53	GO:0034599: cellular response to oxidative stress	2.93E-03
54	GO:0080144: amino acid homeostasis	3.26E-03
55	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.26E-03
56	GO:0006779: porphyrin-containing compound biosynthetic process	3.65E-03
57	GO:1900865: chloroplast RNA modification	3.65E-03
58	GO:0006782: protoporphyrinogen IX biosynthetic process	4.06E-03
59	GO:0043085: positive regulation of catalytic activity	4.48E-03
60	GO:0006879: cellular iron ion homeostasis	4.48E-03
61	GO:0006352: DNA-templated transcription, initiation	4.48E-03
62	GO:0009750: response to fructose	4.48E-03
63	GO:0006415: translational termination	4.48E-03
64	GO:0005983: starch catabolic process	4.92E-03
65	GO:0016024: CDP-diacylglycerol biosynthetic process	4.92E-03
66	GO:0045454: cell redox homeostasis	5.31E-03
67	GO:0006094: gluconeogenesis	5.37E-03
68	GO:0005986: sucrose biosynthetic process	5.37E-03
69	GO:0000027: ribosomal large subunit assembly	7.32E-03
70	GO:0061077: chaperone-mediated protein folding	8.38E-03
71	GO:0016226: iron-sulfur cluster assembly	8.92E-03
72	GO:0042742: defense response to bacterium	9.37E-03
73	GO:0042744: hydrogen peroxide catabolic process	9.84E-03
74	GO:0009790: embryo development	1.01E-02
75	GO:0016117: carotenoid biosynthetic process	1.06E-02
76	GO:0006413: translational initiation	1.11E-02
77	GO:0006662: glycerol ether metabolic process	1.18E-02
78	GO:0008654: phospholipid biosynthetic process	1.31E-02
79	GO:0000302: response to reactive oxygen species	1.37E-02
80	GO:0080156: mitochondrial mRNA modification	1.37E-02
81	GO:0016311: dephosphorylation	2.08E-02
82	GO:0018298: protein-chromophore linkage	2.16E-02
83	GO:0009817: defense response to fungus, incompatible interaction	2.16E-02
84	GO:0048481: plant ovule development	2.16E-02
85	GO:0007568: aging	2.39E-02
86	GO:0009631: cold acclimation	2.39E-02
87	GO:0009637: response to blue light	2.55E-02
88	GO:0010114: response to red light	3.06E-02
89	GO:0051707: response to other organism	3.06E-02
90	GO:0009624: response to nematode	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0019843: rRNA binding	4.20E-13
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.70E-13
12	GO:0003735: structural constituent of ribosome	2.37E-12
13	GO:0005528: FK506 binding	4.06E-09
14	GO:0002161: aminoacyl-tRNA editing activity	3.63E-06
15	GO:0016851: magnesium chelatase activity	8.48E-06
16	GO:0051920: peroxiredoxin activity	5.48E-05
17	GO:0016209: antioxidant activity	9.51E-05
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.40E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.40E-04
20	GO:0003867: 4-aminobutyrate transaminase activity	1.40E-04
21	GO:0047746: chlorophyllase activity	3.20E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	3.20E-04
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.20E-04
24	GO:0016630: protochlorophyllide reductase activity	3.20E-04
25	GO:0030267: glyoxylate reductase (NADP) activity	5.26E-04
26	GO:0004601: peroxidase activity	5.42E-04
27	GO:0016149: translation release factor activity, codon specific	7.53E-04
28	GO:0043023: ribosomal large subunit binding	7.53E-04
29	GO:0008097: 5S rRNA binding	7.53E-04
30	GO:0004812: aminoacyl-tRNA ligase activity	8.45E-04
31	GO:0004659: prenyltransferase activity	9.98E-04
32	GO:0001053: plastid sigma factor activity	9.98E-04
33	GO:0016987: sigma factor activity	9.98E-04
34	GO:0043495: protein anchor	9.98E-04
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.26E-03
36	GO:0004040: amidase activity	1.26E-03
37	GO:0003959: NADPH dehydrogenase activity	1.26E-03
38	GO:0016688: L-ascorbate peroxidase activity	1.55E-03
39	GO:0004605: phosphatidate cytidylyltransferase activity	1.55E-03
40	GO:0004130: cytochrome-c peroxidase activity	1.55E-03
41	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.86E-03
42	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.86E-03
43	GO:0019899: enzyme binding	2.18E-03
44	GO:0008235: metalloexopeptidase activity	2.18E-03
45	GO:0008312: 7S RNA binding	2.52E-03
46	GO:0004033: aldo-keto reductase (NADP) activity	2.52E-03
47	GO:0003747: translation release factor activity	3.26E-03
48	GO:0005381: iron ion transmembrane transporter activity	3.65E-03
49	GO:0008047: enzyme activator activity	4.06E-03
50	GO:0004177: aminopeptidase activity	4.48E-03
51	GO:0000049: tRNA binding	4.92E-03
52	GO:0008081: phosphoric diester hydrolase activity	5.37E-03
53	GO:0031072: heat shock protein binding	5.37E-03
54	GO:0005507: copper ion binding	5.49E-03
55	GO:0051536: iron-sulfur cluster binding	7.32E-03
56	GO:0051087: chaperone binding	7.84E-03
57	GO:0022891: substrate-specific transmembrane transporter activity	9.48E-03
58	GO:0047134: protein-disulfide reductase activity	1.06E-02
59	GO:0008080: N-acetyltransferase activity	1.18E-02
60	GO:0016887: ATPase activity	1.21E-02
61	GO:0003723: RNA binding	1.24E-02
62	GO:0004791: thioredoxin-disulfide reductase activity	1.25E-02
63	GO:0003743: translation initiation factor activity	1.40E-02
64	GO:0004518: nuclease activity	1.44E-02
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
66	GO:0008237: metallopeptidase activity	1.64E-02
67	GO:0046872: metal ion binding	1.71E-02
68	GO:0016597: amino acid binding	1.71E-02
69	GO:0016168: chlorophyll binding	1.86E-02
70	GO:0004222: metalloendopeptidase activity	2.31E-02
71	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
72	GO:0005509: calcium ion binding	3.15E-02
73	GO:0051537: 2 iron, 2 sulfur cluster binding	3.23E-02
74	GO:0051287: NAD binding	3.50E-02
75	GO:0009055: electron carrier activity	3.64E-02
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.78E-02
77	GO:0005215: transporter activity	3.94E-02
78	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
79	GO:0051082: unfolded protein binding	4.85E-02
80	GO:0016491: oxidoreductase activity	4.87E-02
81	GO:0015035: protein disulfide oxidoreductase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.34E-60
3	GO:0009570: chloroplast stroma	2.67E-37
4	GO:0009941: chloroplast envelope	7.15E-26
5	GO:0009535: chloroplast thylakoid membrane	2.81E-19
6	GO:0009543: chloroplast thylakoid lumen	2.89E-18
7	GO:0009579: thylakoid	2.37E-16
8	GO:0031977: thylakoid lumen	2.56E-15
9	GO:0009534: chloroplast thylakoid	6.40E-15
10	GO:0005840: ribosome	3.67E-13
11	GO:0010007: magnesium chelatase complex	3.63E-06
12	GO:0031969: chloroplast membrane	1.11E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.40E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.47E-04
15	GO:0009536: plastid	2.07E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	3.20E-04
17	GO:0009654: photosystem II oxygen evolving complex	5.53E-04
18	GO:0015935: small ribosomal subunit	6.07E-04
19	GO:0019898: extrinsic component of membrane	1.12E-03
20	GO:0009533: chloroplast stromal thylakoid	2.18E-03
21	GO:0015934: large ribosomal subunit	2.56E-03
22	GO:0016020: membrane	2.63E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.88E-03
24	GO:0000311: plastid large ribosomal subunit	4.92E-03
25	GO:0030095: chloroplast photosystem II	5.84E-03
26	GO:0009706: chloroplast inner membrane	6.89E-03
27	GO:0042651: thylakoid membrane	7.84E-03
28	GO:0009523: photosystem II	1.31E-02
29	GO:0046658: anchored component of plasma membrane	1.58E-02
30	GO:0010319: stromule	1.64E-02
31	GO:0022625: cytosolic large ribosomal subunit	2.42E-02