GO Enrichment Analysis of Co-expressed Genes with
AT3G25410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 9 | GO:0009658: chloroplast organization | 2.23E-10 |
| 10 | GO:0006418: tRNA aminoacylation for protein translation | 2.80E-07 |
| 11 | GO:0015979: photosynthesis | 5.15E-07 |
| 12 | GO:0071482: cellular response to light stimulus | 1.19E-06 |
| 13 | GO:0043572: plastid fission | 6.48E-06 |
| 14 | GO:0045454: cell redox homeostasis | 9.60E-06 |
| 15 | GO:0016117: carotenoid biosynthetic process | 3.52E-05 |
| 16 | GO:0032544: plastid translation | 9.46E-05 |
| 17 | GO:0010027: thylakoid membrane organization | 1.09E-04 |
| 18 | GO:0006430: lysyl-tRNA aminoacylation | 1.20E-04 |
| 19 | GO:0018298: protein-chromophore linkage | 1.60E-04 |
| 20 | GO:0006415: translational termination | 1.96E-04 |
| 21 | GO:0043085: positive regulation of catalytic activity | 1.96E-04 |
| 22 | GO:0006352: DNA-templated transcription, initiation | 1.96E-04 |
| 23 | GO:0009637: response to blue light | 2.23E-04 |
| 24 | GO:0010086: embryonic root morphogenesis | 2.77E-04 |
| 25 | GO:0034755: iron ion transmembrane transport | 2.77E-04 |
| 26 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.77E-04 |
| 27 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.77E-04 |
| 28 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.77E-04 |
| 29 | GO:0043039: tRNA aminoacylation | 2.77E-04 |
| 30 | GO:0010020: chloroplast fission | 2.94E-04 |
| 31 | GO:0090351: seedling development | 3.30E-04 |
| 32 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.51E-04 |
| 33 | GO:0006000: fructose metabolic process | 4.58E-04 |
| 34 | GO:0010581: regulation of starch biosynthetic process | 4.58E-04 |
| 35 | GO:0006696: ergosterol biosynthetic process | 4.58E-04 |
| 36 | GO:0061077: chaperone-mediated protein folding | 4.95E-04 |
| 37 | GO:0009793: embryo development ending in seed dormancy | 5.53E-04 |
| 38 | GO:0019048: modulation by virus of host morphology or physiology | 6.57E-04 |
| 39 | GO:0071329: cellular response to sucrose stimulus | 6.57E-04 |
| 40 | GO:0031048: chromatin silencing by small RNA | 6.57E-04 |
| 41 | GO:0016556: mRNA modification | 6.57E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 6.57E-04 |
| 43 | GO:0007231: osmosensory signaling pathway | 6.57E-04 |
| 44 | GO:0051567: histone H3-K9 methylation | 8.72E-04 |
| 45 | GO:0033500: carbohydrate homeostasis | 8.72E-04 |
| 46 | GO:0006021: inositol biosynthetic process | 8.72E-04 |
| 47 | GO:0071483: cellular response to blue light | 8.72E-04 |
| 48 | GO:0009902: chloroplast relocation | 8.72E-04 |
| 49 | GO:0010021: amylopectin biosynthetic process | 8.72E-04 |
| 50 | GO:0009765: photosynthesis, light harvesting | 8.72E-04 |
| 51 | GO:0016120: carotene biosynthetic process | 1.10E-03 |
| 52 | GO:0032543: mitochondrial translation | 1.10E-03 |
| 53 | GO:0006564: L-serine biosynthetic process | 1.10E-03 |
| 54 | GO:0010236: plastoquinone biosynthetic process | 1.10E-03 |
| 55 | GO:0016123: xanthophyll biosynthetic process | 1.10E-03 |
| 56 | GO:0009790: embryo development | 1.15E-03 |
| 57 | GO:0016554: cytidine to uridine editing | 1.35E-03 |
| 58 | GO:0006828: manganese ion transport | 1.35E-03 |
| 59 | GO:0048831: regulation of shoot system development | 1.35E-03 |
| 60 | GO:0010190: cytochrome b6f complex assembly | 1.35E-03 |
| 61 | GO:0016458: gene silencing | 1.35E-03 |
| 62 | GO:0042549: photosystem II stabilization | 1.35E-03 |
| 63 | GO:0000470: maturation of LSU-rRNA | 1.35E-03 |
| 64 | GO:0042026: protein refolding | 1.61E-03 |
| 65 | GO:0006458: 'de novo' protein folding | 1.61E-03 |
| 66 | GO:0048509: regulation of meristem development | 1.61E-03 |
| 67 | GO:0010189: vitamin E biosynthetic process | 1.61E-03 |
| 68 | GO:0009854: oxidative photosynthetic carbon pathway | 1.61E-03 |
| 69 | GO:0015995: chlorophyll biosynthetic process | 1.63E-03 |
| 70 | GO:0048481: plant ovule development | 1.81E-03 |
| 71 | GO:0010196: nonphotochemical quenching | 1.89E-03 |
| 72 | GO:0008272: sulfate transport | 1.89E-03 |
| 73 | GO:0009645: response to low light intensity stimulus | 1.89E-03 |
| 74 | GO:0006400: tRNA modification | 1.89E-03 |
| 75 | GO:0000105: histidine biosynthetic process | 2.19E-03 |
| 76 | GO:0009853: photorespiration | 2.28E-03 |
| 77 | GO:0009657: plastid organization | 2.50E-03 |
| 78 | GO:0019430: removal of superoxide radicals | 2.50E-03 |
| 79 | GO:0017004: cytochrome complex assembly | 2.50E-03 |
| 80 | GO:0006002: fructose 6-phosphate metabolic process | 2.50E-03 |
| 81 | GO:0010114: response to red light | 2.93E-03 |
| 82 | GO:1900865: chloroplast RNA modification | 3.16E-03 |
| 83 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.16E-03 |
| 84 | GO:0043067: regulation of programmed cell death | 3.16E-03 |
| 85 | GO:0006457: protein folding | 3.44E-03 |
| 86 | GO:0030422: production of siRNA involved in RNA interference | 3.51E-03 |
| 87 | GO:0045036: protein targeting to chloroplast | 3.51E-03 |
| 88 | GO:0009773: photosynthetic electron transport in photosystem I | 3.88E-03 |
| 89 | GO:0006879: cellular iron ion homeostasis | 3.88E-03 |
| 90 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.88E-03 |
| 91 | GO:0006816: calcium ion transport | 3.88E-03 |
| 92 | GO:0045037: protein import into chloroplast stroma | 4.26E-03 |
| 93 | GO:0006790: sulfur compound metabolic process | 4.26E-03 |
| 94 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.64E-03 |
| 95 | GO:0006094: gluconeogenesis | 4.64E-03 |
| 96 | GO:0005986: sucrose biosynthetic process | 4.64E-03 |
| 97 | GO:0032259: methylation | 5.01E-03 |
| 98 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 99 | GO:0010207: photosystem II assembly | 5.04E-03 |
| 100 | GO:0005985: sucrose metabolic process | 5.46E-03 |
| 101 | GO:0046854: phosphatidylinositol phosphorylation | 5.46E-03 |
| 102 | GO:0055114: oxidation-reduction process | 5.62E-03 |
| 103 | GO:0080147: root hair cell development | 6.32E-03 |
| 104 | GO:0009116: nucleoside metabolic process | 6.32E-03 |
| 105 | GO:0007017: microtubule-based process | 6.76E-03 |
| 106 | GO:0042742: defense response to bacterium | 6.77E-03 |
| 107 | GO:0006306: DNA methylation | 7.22E-03 |
| 108 | GO:0016226: iron-sulfur cluster assembly | 7.69E-03 |
| 109 | GO:0006730: one-carbon metabolic process | 7.69E-03 |
| 110 | GO:0042744: hydrogen peroxide catabolic process | 7.95E-03 |
| 111 | GO:0006413: translational initiation | 8.98E-03 |
| 112 | GO:0016036: cellular response to phosphate starvation | 8.98E-03 |
| 113 | GO:0006662: glycerol ether metabolic process | 1.02E-02 |
| 114 | GO:0010197: polar nucleus fusion | 1.02E-02 |
| 115 | GO:0006342: chromatin silencing | 1.02E-02 |
| 116 | GO:0009409: response to cold | 1.07E-02 |
| 117 | GO:0019252: starch biosynthetic process | 1.13E-02 |
| 118 | GO:0016032: viral process | 1.24E-02 |
| 119 | GO:0051607: defense response to virus | 1.47E-02 |
| 120 | GO:0010029: regulation of seed germination | 1.60E-02 |
| 121 | GO:0009816: defense response to bacterium, incompatible interaction | 1.60E-02 |
| 122 | GO:0042128: nitrate assimilation | 1.66E-02 |
| 123 | GO:0009817: defense response to fungus, incompatible interaction | 1.85E-02 |
| 124 | GO:0000160: phosphorelay signal transduction system | 1.92E-02 |
| 125 | GO:0010218: response to far red light | 1.99E-02 |
| 126 | GO:0034599: cellular response to oxidative stress | 2.26E-02 |
| 127 | GO:0009644: response to high light intensity | 2.78E-02 |
| 128 | GO:0006364: rRNA processing | 3.25E-02 |
| 129 | GO:0006813: potassium ion transport | 3.25E-02 |
| 130 | GO:0009736: cytokinin-activated signaling pathway | 3.25E-02 |
| 131 | GO:0006417: regulation of translation | 3.49E-02 |
| 132 | GO:0006508: proteolysis | 3.62E-02 |
| 133 | GO:0006396: RNA processing | 4.26E-02 |
| 134 | GO:0009735: response to cytokinin | 4.44E-02 |
| 135 | GO:0009416: response to light stimulus | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019955: cytokine binding | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 7 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 8 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 9 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 10 | GO:0009885: transmembrane histidine kinase cytokinin receptor activity | 0.00E+00 |
| 11 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 12 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 13 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 14 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 15 | GO:0051920: peroxiredoxin activity | 3.19E-07 |
| 16 | GO:0004812: aminoacyl-tRNA ligase activity | 7.82E-07 |
| 17 | GO:0016209: antioxidant activity | 8.08E-07 |
| 18 | GO:0002161: aminoacyl-tRNA editing activity | 2.75E-06 |
| 19 | GO:0016149: translation release factor activity, codon specific | 6.48E-06 |
| 20 | GO:0001053: plastid sigma factor activity | 1.22E-05 |
| 21 | GO:0016987: sigma factor activity | 1.22E-05 |
| 22 | GO:0005528: FK506 binding | 1.45E-05 |
| 23 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.78E-05 |
| 24 | GO:0004601: peroxidase activity | 4.38E-05 |
| 25 | GO:0051082: unfolded protein binding | 7.23E-05 |
| 26 | GO:0004033: aldo-keto reductase (NADP) activity | 7.49E-05 |
| 27 | GO:0008237: metallopeptidase activity | 9.19E-05 |
| 28 | GO:0003747: translation release factor activity | 1.17E-04 |
| 29 | GO:0004831: tyrosine-tRNA ligase activity | 1.20E-04 |
| 30 | GO:0051996: squalene synthase activity | 1.20E-04 |
| 31 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.20E-04 |
| 32 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.20E-04 |
| 33 | GO:0004824: lysine-tRNA ligase activity | 1.20E-04 |
| 34 | GO:0008047: enzyme activator activity | 1.67E-04 |
| 35 | GO:0031072: heat shock protein binding | 2.59E-04 |
| 36 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.77E-04 |
| 37 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.77E-04 |
| 38 | GO:0009884: cytokinin receptor activity | 2.77E-04 |
| 39 | GO:0016630: protochlorophyllide reductase activity | 2.77E-04 |
| 40 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.77E-04 |
| 41 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.77E-04 |
| 42 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.77E-04 |
| 43 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.77E-04 |
| 44 | GO:0033201: alpha-1,4-glucan synthase activity | 2.77E-04 |
| 45 | GO:0004817: cysteine-tRNA ligase activity | 2.77E-04 |
| 46 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.77E-04 |
| 47 | GO:0031409: pigment binding | 3.68E-04 |
| 48 | GO:0004373: glycogen (starch) synthase activity | 4.58E-04 |
| 49 | GO:0003913: DNA photolyase activity | 4.58E-04 |
| 50 | GO:0005034: osmosensor activity | 4.58E-04 |
| 51 | GO:0004176: ATP-dependent peptidase activity | 4.95E-04 |
| 52 | GO:0035197: siRNA binding | 6.57E-04 |
| 53 | GO:0043023: ribosomal large subunit binding | 6.57E-04 |
| 54 | GO:0008097: 5S rRNA binding | 6.57E-04 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 8.58E-04 |
| 56 | GO:0009011: starch synthase activity | 8.72E-04 |
| 57 | GO:0004659: prenyltransferase activity | 8.72E-04 |
| 58 | GO:0005319: lipid transporter activity | 8.72E-04 |
| 59 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.10E-03 |
| 60 | GO:0003959: NADPH dehydrogenase activity | 1.10E-03 |
| 61 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.11E-03 |
| 62 | GO:0016168: chlorophyll binding | 1.47E-03 |
| 63 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.61E-03 |
| 64 | GO:0004721: phosphoprotein phosphatase activity | 1.63E-03 |
| 65 | GO:0009881: photoreceptor activity | 1.89E-03 |
| 66 | GO:0019899: enzyme binding | 1.89E-03 |
| 67 | GO:0004222: metalloendopeptidase activity | 1.99E-03 |
| 68 | GO:0008168: methyltransferase activity | 2.35E-03 |
| 69 | GO:0005381: iron ion transmembrane transporter activity | 3.16E-03 |
| 70 | GO:0005384: manganese ion transmembrane transporter activity | 3.16E-03 |
| 71 | GO:0004673: protein histidine kinase activity | 3.51E-03 |
| 72 | GO:0015386: potassium:proton antiporter activity | 3.88E-03 |
| 73 | GO:0044183: protein binding involved in protein folding | 3.88E-03 |
| 74 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.93E-03 |
| 75 | GO:0000049: tRNA binding | 4.26E-03 |
| 76 | GO:0004521: endoribonuclease activity | 4.26E-03 |
| 77 | GO:0015095: magnesium ion transmembrane transporter activity | 4.64E-03 |
| 78 | GO:0000155: phosphorelay sensor kinase activity | 4.64E-03 |
| 79 | GO:0003924: GTPase activity | 5.29E-03 |
| 80 | GO:0051536: iron-sulfur cluster binding | 6.32E-03 |
| 81 | GO:0015079: potassium ion transmembrane transporter activity | 6.76E-03 |
| 82 | GO:0008324: cation transmembrane transporter activity | 6.76E-03 |
| 83 | GO:0043424: protein histidine kinase binding | 6.76E-03 |
| 84 | GO:0047134: protein-disulfide reductase activity | 9.17E-03 |
| 85 | GO:0046872: metal ion binding | 9.28E-03 |
| 86 | GO:0019901: protein kinase binding | 1.13E-02 |
| 87 | GO:0003743: translation initiation factor activity | 1.13E-02 |
| 88 | GO:0016597: amino acid binding | 1.47E-02 |
| 89 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.79E-02 |
| 90 | GO:0005525: GTP binding | 2.06E-02 |
| 91 | GO:0003723: RNA binding | 2.14E-02 |
| 92 | GO:0005524: ATP binding | 2.33E-02 |
| 93 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.41E-02 |
| 94 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.78E-02 |
| 95 | GO:0043621: protein self-association | 2.78E-02 |
| 96 | GO:0005198: structural molecule activity | 2.85E-02 |
| 97 | GO:0005515: protein binding | 2.92E-02 |
| 98 | GO:0004519: endonuclease activity | 2.98E-02 |
| 99 | GO:0051287: NAD binding | 3.01E-02 |
| 100 | GO:0016491: oxidoreductase activity | 3.76E-02 |
| 101 | GO:0016887: ATPase activity | 4.24E-02 |
| 102 | GO:0015035: protein disulfide oxidoreductase activity | 4.26E-02 |
| 103 | GO:0019843: rRNA binding | 4.89E-02 |
| 104 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.76E-50 |
| 2 | GO:0009941: chloroplast envelope | 2.66E-23 |
| 3 | GO:0009570: chloroplast stroma | 9.25E-23 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.16E-17 |
| 5 | GO:0031969: chloroplast membrane | 1.49E-08 |
| 6 | GO:0009706: chloroplast inner membrane | 1.47E-07 |
| 7 | GO:0009579: thylakoid | 1.30E-06 |
| 8 | GO:0010287: plastoglobule | 6.24E-06 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 7.15E-06 |
| 10 | GO:0009536: plastid | 1.19E-04 |
| 11 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 1.20E-04 |
| 12 | GO:0009782: photosystem I antenna complex | 1.20E-04 |
| 13 | GO:0030076: light-harvesting complex | 3.30E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 4.51E-04 |
| 15 | GO:0005719: nuclear euchromatin | 6.57E-04 |
| 16 | GO:0009534: chloroplast thylakoid | 6.66E-04 |
| 17 | GO:0010319: stromule | 1.24E-03 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.89E-03 |
| 19 | GO:0009501: amyloplast | 2.19E-03 |
| 20 | GO:0009539: photosystem II reaction center | 2.50E-03 |
| 21 | GO:0031977: thylakoid lumen | 2.70E-03 |
| 22 | GO:0015030: Cajal body | 3.16E-03 |
| 23 | GO:0042651: thylakoid membrane | 6.76E-03 |
| 24 | GO:0005623: cell | 7.17E-03 |
| 25 | GO:0009532: plastid stroma | 7.22E-03 |
| 26 | GO:0009522: photosystem I | 1.07E-02 |
| 27 | GO:0009523: photosystem II | 1.13E-02 |
| 28 | GO:0019898: extrinsic component of membrane | 1.13E-02 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 1.54E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 1.85E-02 |
| 31 | GO:0005654: nucleoplasm | 4.80E-02 |