Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
2GO:0080056: petal vascular tissue pattern formation0.00E+00
3GO:0080057: sepal vascular tissue pattern formation0.00E+00
4GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening0.00E+00
5GO:0006364: rRNA processing5.39E-06
6GO:0071028: nuclear mRNA surveillance1.21E-05
7GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic1.21E-05
8GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic1.21E-05
9GO:0043687: post-translational protein modification1.21E-05
10GO:0031125: rRNA 3'-end processing3.21E-05
11GO:0071051: polyadenylation-dependent snoRNA 3'-end processing3.21E-05
12GO:0034475: U4 snRNA 3'-end processing3.21E-05
13GO:0045948: positive regulation of translational initiation3.21E-05
14GO:0010501: RNA secondary structure unwinding3.32E-05
15GO:0042780: tRNA 3'-end processing5.78E-05
16GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic5.78E-05
17GO:0016075: rRNA catabolic process5.78E-05
18GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'5.78E-05
19GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway1.22E-04
20GO:0018279: protein N-linked glycosylation via asparagine1.59E-04
21GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.39E-04
22GO:0009094: L-phenylalanine biosynthetic process2.39E-04
23GO:0009553: embryo sac development3.14E-04
24GO:0032508: DNA duplex unwinding3.27E-04
25GO:0006367: transcription initiation from RNA polymerase II promoter3.73E-04
26GO:0060321: acceptance of pollen3.73E-04
27GO:0006913: nucleocytoplasmic transport5.71E-04
28GO:0000266: mitochondrial fission6.23E-04
29GO:0010588: cotyledon vascular tissue pattern formation6.76E-04
30GO:0010102: lateral root morphogenesis6.76E-04
31GO:0042254: ribosome biogenesis8.52E-04
32GO:0000027: ribosomal large subunit assembly9.02E-04
33GO:0009561: megagametogenesis1.21E-03
34GO:0000413: protein peptidyl-prolyl isomerization1.34E-03
35GO:0010305: leaf vascular tissue pattern formation1.40E-03
36GO:0009791: post-embryonic development1.54E-03
37GO:0016126: sterol biosynthetic process2.06E-03
38GO:0048573: photoperiodism, flowering2.30E-03
39GO:0009631: cold acclimation2.71E-03
40GO:0009651: response to salt stress2.91E-03
41GO:0048367: shoot system development4.81E-03
42GO:0016569: covalent chromatin modification5.13E-03
43GO:0006396: RNA processing5.45E-03
44GO:0009790: embryo development6.94E-03
45GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process8.43E-03
46GO:0006970: response to osmotic stress1.11E-02
47GO:0048366: leaf development1.19E-02
48GO:0009793: embryo development ending in seed dormancy1.21E-02
49GO:0048364: root development1.67E-02
50GO:0006457: protein folding2.94E-02
51GO:0009414: response to water deprivation3.97E-02
52GO:0006979: response to oxidative stress4.06E-02
RankGO TermAdjusted P value
1GO:0004631: phosphomevalonate kinase activity0.00E+00
2GO:0016274: protein-arginine N-methyltransferase activity1.21E-05
3GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters3.21E-05
4GO:0042781: 3'-tRNA processing endoribonuclease activity5.78E-05
5GO:0070181: small ribosomal subunit rRNA binding5.78E-05
6GO:0003729: mRNA binding1.21E-04
7GO:0004576: oligosaccharyl transferase activity1.22E-04
8GO:0047769: arogenate dehydratase activity1.22E-04
9GO:0004664: prephenate dehydratase activity1.22E-04
10GO:0003697: single-stranded DNA binding1.25E-04
11GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.59E-04
12GO:0031369: translation initiation factor binding1.98E-04
13GO:0003950: NAD+ ADP-ribosyltransferase activity2.39E-04
14GO:0030515: snoRNA binding2.82E-04
15GO:0003676: nucleic acid binding6.27E-04
16GO:0000175: 3'-5'-exoribonuclease activity6.76E-04
17GO:0003727: single-stranded RNA binding1.21E-03
18GO:0016597: amino acid binding1.98E-03
19GO:0004004: ATP-dependent RNA helicase activity2.30E-03
20GO:0005096: GTPase activator activity2.55E-03
21GO:0000166: nucleotide binding2.60E-03
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.80E-03
23GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.20E-03
24GO:0003690: double-stranded DNA binding4.30E-03
25GO:0008026: ATP-dependent helicase activity5.56E-03
26GO:0019843: rRNA binding6.23E-03
27GO:0003723: RNA binding8.48E-03
28GO:0005525: GTP binding3.48E-02
29GO:0003824: catalytic activity4.32E-02
RankGO TermAdjusted P value
1GO:0019867: outer membrane0.00E+00
2GO:0032040: small-subunit processome7.42E-06
3GO:0005730: nucleolus1.06E-05
4GO:0000177: cytoplasmic exosome (RNase complex)3.21E-05
5GO:0000176: nuclear exosome (RNase complex)5.78E-05
6GO:0008250: oligosaccharyltransferase complex1.59E-04
7GO:0016363: nuclear matrix2.39E-04
8GO:0030687: preribosome, large subunit precursor2.82E-04
9GO:0005680: anaphase-promoting complex4.21E-04
10GO:0005665: DNA-directed RNA polymerase II, core complex6.23E-04
11GO:0031965: nuclear membrane1.54E-03
12GO:0000932: P-body2.06E-03
13GO:0005819: spindle3.06E-03
14GO:0031902: late endosome membrane3.24E-03
15GO:0090406: pollen tube3.43E-03
16GO:0005635: nuclear envelope4.40E-03
17GO:0005732: small nucleolar ribonucleoprotein complex5.67E-03
18GO:0009524: phragmoplast6.47E-03
19GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.13E-02
20GO:0005777: peroxisome2.69E-02
21GO:0005829: cytosol3.43E-02
22GO:0005783: endoplasmic reticulum3.66E-02
23GO:0009536: plastid4.67E-02
Gene type



Gene DE type