co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G24190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
6	GO:0015843: methylammonium transport	0.00E+00
7	GO:0019464: glycine decarboxylation via glycine cleavage system	2.64E-06
8	GO:0006546: glycine catabolic process	2.64E-06
9	GO:0009854: oxidative photosynthetic carbon pathway	1.00E-05
10	GO:0009637: response to blue light	3.90E-05
11	GO:1902265: abscisic acid homeostasis	4.88E-05
12	GO:0006659: phosphatidylserine biosynthetic process	4.88E-05
13	GO:0000066: mitochondrial ornithine transport	4.88E-05
14	GO:0007154: cell communication	1.20E-04
15	GO:0031022: nuclear migration along microfilament	2.06E-04
16	GO:0044375: regulation of peroxisome size	2.06E-04
17	GO:0005977: glycogen metabolic process	2.06E-04
18	GO:0006011: UDP-glucose metabolic process	2.06E-04
19	GO:0080001: mucilage extrusion from seed coat	3.01E-04
20	GO:0010148: transpiration	3.01E-04
21	GO:0042823: pyridoxal phosphate biosynthetic process	3.01E-04
22	GO:0015696: ammonium transport	3.01E-04
23	GO:2000114: regulation of establishment of cell polarity	3.01E-04
24	GO:0009765: photosynthesis, light harvesting	4.04E-04
25	GO:0072488: ammonium transmembrane transport	4.04E-04
26	GO:0006021: inositol biosynthetic process	4.04E-04
27	GO:0009902: chloroplast relocation	4.04E-04
28	GO:0048442: sepal development	4.04E-04
29	GO:0016094: polyprenol biosynthetic process	5.13E-04
30	GO:0032876: negative regulation of DNA endoreduplication	5.13E-04
31	GO:0019408: dolichol biosynthetic process	5.13E-04
32	GO:0048359: mucilage metabolic process involved in seed coat development	5.13E-04
33	GO:0016120: carotene biosynthetic process	5.13E-04
34	GO:0043097: pyrimidine nucleoside salvage	5.13E-04
35	GO:0010236: plastoquinone biosynthetic process	5.13E-04
36	GO:0045962: positive regulation of development, heterochronic	6.29E-04
37	GO:0006206: pyrimidine nucleobase metabolic process	6.29E-04
38	GO:0050665: hydrogen peroxide biosynthetic process	6.29E-04
39	GO:0010942: positive regulation of cell death	6.29E-04
40	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.29E-04
41	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	6.29E-04
42	GO:0009853: photorespiration	7.29E-04
43	GO:0010076: maintenance of floral meristem identity	7.50E-04
44	GO:0017148: negative regulation of translation	7.50E-04
45	GO:0009903: chloroplast avoidance movement	7.50E-04
46	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.01E-03
47	GO:0048766: root hair initiation	1.01E-03
48	GO:0052543: callose deposition in cell wall	1.01E-03
49	GO:0016559: peroxisome fission	1.01E-03
50	GO:0009414: response to water deprivation	1.06E-03
51	GO:0071482: cellular response to light stimulus	1.14E-03
52	GO:0007389: pattern specification process	1.14E-03
53	GO:0009056: catabolic process	1.28E-03
54	GO:0048441: petal development	1.59E-03
55	GO:0010192: mucilage biosynthetic process	1.59E-03
56	GO:0018119: peptidyl-cysteine S-nitrosylation	1.75E-03
57	GO:0016485: protein processing	1.75E-03
58	GO:0006810: transport	1.96E-03
59	GO:0030048: actin filament-based movement	2.08E-03
60	GO:0048440: carpel development	2.26E-03
61	GO:0019253: reductive pentose-phosphate cycle	2.26E-03
62	GO:0010540: basipetal auxin transport	2.26E-03
63	GO:0007031: peroxisome organization	2.44E-03
64	GO:0042343: indole glucosinolate metabolic process	2.44E-03
65	GO:0009825: multidimensional cell growth	2.44E-03
66	GO:0006636: unsaturated fatty acid biosynthetic process	2.62E-03
67	GO:0009833: plant-type primary cell wall biogenesis	2.62E-03
68	GO:0006833: water transport	2.62E-03
69	GO:0006633: fatty acid biosynthetic process	2.70E-03
70	GO:0008299: isoprenoid biosynthetic process	3.01E-03
71	GO:0009768: photosynthesis, light harvesting in photosystem I	3.01E-03
72	GO:0098542: defense response to other organism	3.20E-03
73	GO:0030433: ubiquitin-dependent ERAD pathway	3.41E-03
74	GO:0055114: oxidation-reduction process	3.75E-03
75	GO:0048443: stamen development	3.82E-03
76	GO:0010214: seed coat development	3.82E-03
77	GO:0016117: carotenoid biosynthetic process	4.04E-03
78	GO:0042631: cellular response to water deprivation	4.26E-03
79	GO:0034220: ion transmembrane transport	4.26E-03
80	GO:0010051: xylem and phloem pattern formation	4.26E-03
81	GO:0009791: post-embryonic development	4.94E-03
82	GO:0008654: phospholipid biosynthetic process	4.94E-03
83	GO:0010583: response to cyclopentenone	5.42E-03
84	GO:0080167: response to karrikin	5.63E-03
85	GO:0071555: cell wall organization	5.89E-03
86	GO:0015979: photosynthesis	6.43E-03
87	GO:0016126: sterol biosynthetic process	6.67E-03
88	GO:0010029: regulation of seed germination	6.94E-03
89	GO:0009817: defense response to fungus, incompatible interaction	8.03E-03
90	GO:0030244: cellulose biosynthetic process	8.03E-03
91	GO:0018298: protein-chromophore linkage	8.03E-03
92	GO:0016042: lipid catabolic process	8.08E-03
93	GO:0009408: response to heat	8.31E-03
94	GO:0009832: plant-type cell wall biogenesis	8.31E-03
95	GO:0010218: response to far red light	8.60E-03
96	GO:0006839: mitochondrial transport	1.04E-02
97	GO:0010114: response to red light	1.13E-02
98	GO:0000209: protein polyubiquitination	1.16E-02
99	GO:0042546: cell wall biogenesis	1.16E-02
100	GO:0009734: auxin-activated signaling pathway	1.17E-02
101	GO:0009965: leaf morphogenesis	1.23E-02
102	GO:0031347: regulation of defense response	1.30E-02
103	GO:0000165: MAPK cascade	1.30E-02
104	GO:0006486: protein glycosylation	1.40E-02
105	GO:0009585: red, far-red light phototransduction	1.40E-02
106	GO:0006096: glycolytic process	1.57E-02
107	GO:0009620: response to fungus	1.68E-02
108	GO:0009624: response to nematode	1.79E-02
109	GO:0009058: biosynthetic process	2.18E-02
110	GO:0042742: defense response to bacterium	3.00E-02
111	GO:0030154: cell differentiation	3.27E-02
112	GO:0009733: response to auxin	3.37E-02
113	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.42E-02
114	GO:0009658: chloroplast organization	3.61E-02
115	GO:0006970: response to osmotic stress	3.81E-02
116	GO:0009723: response to ethylene	4.01E-02
117	GO:0009409: response to cold	4.05E-02
118	GO:0048366: leaf development	4.06E-02
119	GO:0044550: secondary metabolite biosynthetic process	4.47E-02
120	GO:0046686: response to cadmium ion	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
2	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
3	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
4	GO:0008974: phosphoribulokinase activity	0.00E+00
5	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
8	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.36E-06
11	GO:0010313: phytochrome binding	4.88E-05
12	GO:0030797: 24-methylenesterol C-methyltransferase activity	4.88E-05
13	GO:0050347: trans-octaprenyltranstransferase activity	1.20E-04
14	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.20E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	1.20E-04
16	GO:0004512: inositol-3-phosphate synthase activity	1.20E-04
17	GO:1901981: phosphatidylinositol phosphate binding	1.20E-04
18	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	2.06E-04
19	GO:0048027: mRNA 5'-UTR binding	3.01E-04
20	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.01E-04
21	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.01E-04
22	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.01E-04
23	GO:0008453: alanine-glyoxylate transaminase activity	4.04E-04
24	GO:0008891: glycolate oxidase activity	4.04E-04
25	GO:0004301: epoxide hydrolase activity	4.04E-04
26	GO:0045547: dehydrodolichyl diphosphate synthase activity	5.13E-04
27	GO:0002094: polyprenyltransferase activity	5.13E-04
28	GO:0000210: NAD+ diphosphatase activity	6.29E-04
29	GO:0008519: ammonium transmembrane transporter activity	6.29E-04
30	GO:0004849: uridine kinase activity	7.50E-04
31	GO:0052689: carboxylic ester hydrolase activity	8.25E-04
32	GO:0004743: pyruvate kinase activity	1.43E-03
33	GO:0030955: potassium ion binding	1.43E-03
34	GO:0008266: poly(U) RNA binding	2.26E-03
35	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.26E-03
36	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.62E-03
37	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.62E-03
38	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.62E-03
39	GO:0031409: pigment binding	2.62E-03
40	GO:0051087: chaperone binding	3.01E-03
41	GO:0004176: ATP-dependent peptidase activity	3.20E-03
42	GO:0016760: cellulose synthase (UDP-forming) activity	3.61E-03
43	GO:0042802: identical protein binding	3.75E-03
44	GO:0008080: N-acetyltransferase activity	4.48E-03
45	GO:0010181: FMN binding	4.71E-03
46	GO:0048038: quinone binding	5.18E-03
47	GO:0004518: nuclease activity	5.42E-03
48	GO:0016759: cellulose synthase activity	5.91E-03
49	GO:0008237: metallopeptidase activity	6.16E-03
50	GO:0015250: water channel activity	6.67E-03
51	GO:0016168: chlorophyll binding	6.94E-03
52	GO:0030247: polysaccharide binding	7.48E-03
53	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	7.75E-03
54	GO:0004222: metalloendopeptidase activity	8.60E-03
55	GO:0016887: ATPase activity	1.29E-02
56	GO:0051287: NAD binding	1.30E-02
57	GO:0016298: lipase activity	1.43E-02
58	GO:0031625: ubiquitin protein ligase binding	1.50E-02
59	GO:0016746: transferase activity, transferring acyl groups	1.83E-02
60	GO:0004252: serine-type endopeptidase activity	2.27E-02
61	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.31E-02
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.14E-02
63	GO:0005515: protein binding	3.24E-02
64	GO:0046982: protein heterodimerization activity	3.56E-02
65	GO:0000287: magnesium ion binding	3.56E-02
66	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-02
67	GO:0005524: ATP binding	3.71E-02
68	GO:0016491: oxidoreductase activity	3.94E-02
69	GO:0061630: ubiquitin protein ligase activity	4.36E-02
70	GO:0004672: protein kinase activity	4.39E-02
71	GO:0004871: signal transducer activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.53E-07
2	GO:0005960: glycine cleavage complex	1.36E-06
3	GO:0009570: chloroplast stroma	7.42E-05
4	GO:0048046: apoplast	8.25E-05
5	GO:0009925: basal plasma membrane	1.20E-04
6	GO:0009509: chromoplast	2.06E-04
7	GO:0005777: peroxisome	4.68E-04
8	GO:0009941: chloroplast envelope	7.41E-04
9	GO:0005779: integral component of peroxisomal membrane	1.14E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.28E-03
11	GO:0048471: perinuclear region of cytoplasm	1.75E-03
12	GO:0019013: viral nucleocapsid	2.08E-03
13	GO:0030076: light-harvesting complex	2.44E-03
14	GO:0005829: cytosol	2.60E-03
15	GO:0009532: plastid stroma	3.20E-03
16	GO:0009535: chloroplast thylakoid membrane	3.72E-03
17	GO:0009522: photosystem I	4.71E-03
18	GO:0009523: photosystem II	4.94E-03
19	GO:0005783: endoplasmic reticulum	5.91E-03
20	GO:0005778: peroxisomal membrane	6.16E-03
21	GO:0010319: stromule	6.16E-03
22	GO:0009536: plastid	7.62E-03
23	GO:0005743: mitochondrial inner membrane	7.73E-03
24	GO:0005887: integral component of plasma membrane	1.13E-02
25	GO:0005834: heterotrimeric G-protein complex	1.65E-02
26	GO:0009579: thylakoid	1.77E-02
27	GO:0009534: chloroplast thylakoid	1.79E-02
28	GO:0010287: plastoglobule	2.02E-02
29	GO:0009543: chloroplast thylakoid lumen	2.10E-02
30	GO:0005623: cell	2.14E-02
31	GO:0046658: anchored component of plasma membrane	3.23E-02
32	GO:0016020: membrane	3.34E-02
33	GO:0005618: cell wall	3.35E-02
34	GO:0009505: plant-type cell wall	3.75E-02
35	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.86E-02
36	GO:0031969: chloroplast membrane	4.21E-02