co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.34E-07
6	GO:0009735: response to cytokinin	3.48E-05
7	GO:0015979: photosynthesis	3.78E-05
8	GO:0090548: response to nitrate starvation	1.77E-04
9	GO:1902458: positive regulation of stomatal opening	1.77E-04
10	GO:0034337: RNA folding	1.77E-04
11	GO:0051180: vitamin transport	1.77E-04
12	GO:0030974: thiamine pyrophosphate transport	1.77E-04
13	GO:0046520: sphingoid biosynthetic process	1.77E-04
14	GO:1902025: nitrate import	1.77E-04
15	GO:0071277: cellular response to calcium ion	1.77E-04
16	GO:0000481: maturation of 5S rRNA	1.77E-04
17	GO:0010205: photoinhibition	2.51E-04
18	GO:0018298: protein-chromophore linkage	3.37E-04
19	GO:0000038: very long-chain fatty acid metabolic process	3.42E-04
20	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.01E-04
21	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.01E-04
22	GO:0006633: fatty acid biosynthetic process	4.01E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	4.01E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	4.01E-04
25	GO:0015893: drug transport	4.01E-04
26	GO:0001736: establishment of planar polarity	4.01E-04
27	GO:0009409: response to cold	5.82E-04
28	GO:0006000: fructose metabolic process	6.55E-04
29	GO:0015714: phosphoenolpyruvate transport	6.55E-04
30	GO:0006518: peptide metabolic process	6.55E-04
31	GO:0009768: photosynthesis, light harvesting in photosystem I	7.64E-04
32	GO:0016998: cell wall macromolecule catabolic process	8.37E-04
33	GO:0010371: regulation of gibberellin biosynthetic process	9.34E-04
34	GO:0080170: hydrogen peroxide transmembrane transport	9.34E-04
35	GO:0015976: carbon utilization	1.24E-03
36	GO:0006183: GTP biosynthetic process	1.24E-03
37	GO:0045727: positive regulation of translation	1.24E-03
38	GO:0015994: chlorophyll metabolic process	1.24E-03
39	GO:2000122: negative regulation of stomatal complex development	1.24E-03
40	GO:0031122: cytoplasmic microtubule organization	1.24E-03
41	GO:0015713: phosphoglycerate transport	1.24E-03
42	GO:0010037: response to carbon dioxide	1.24E-03
43	GO:0009416: response to light stimulus	1.25E-03
44	GO:0042335: cuticle development	1.25E-03
45	GO:0010182: sugar mediated signaling pathway	1.35E-03
46	GO:0006461: protein complex assembly	1.57E-03
47	GO:0016120: carotene biosynthetic process	1.57E-03
48	GO:0006656: phosphatidylcholine biosynthetic process	1.57E-03
49	GO:0006564: L-serine biosynthetic process	1.57E-03
50	GO:0010236: plastoquinone biosynthetic process	1.57E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	1.57E-03
52	GO:0048759: xylem vessel member cell differentiation	1.94E-03
53	GO:0010405: arabinogalactan protein metabolic process	1.94E-03
54	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.94E-03
55	GO:0048827: phyllome development	1.94E-03
56	GO:0042549: photosystem II stabilization	1.94E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.94E-03
58	GO:0009913: epidermal cell differentiation	1.94E-03
59	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.94E-03
60	GO:0010337: regulation of salicylic acid metabolic process	1.94E-03
61	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.94E-03
62	GO:0006596: polyamine biosynthetic process	1.94E-03
63	GO:0006561: proline biosynthetic process	1.94E-03
64	GO:0071805: potassium ion transmembrane transport	2.12E-03
65	GO:0010189: vitamin E biosynthetic process	2.32E-03
66	GO:0010027: thylakoid membrane organization	2.38E-03
67	GO:0006810: transport	2.46E-03
68	GO:0009395: phospholipid catabolic process	2.74E-03
69	GO:0030497: fatty acid elongation	2.74E-03
70	GO:0010196: nonphotochemical quenching	2.74E-03
71	GO:0009645: response to low light intensity stimulus	2.74E-03
72	GO:0010444: guard mother cell differentiation	2.74E-03
73	GO:0006400: tRNA modification	2.74E-03
74	GO:0030244: cellulose biosynthetic process	3.09E-03
75	GO:0007155: cell adhesion	3.17E-03
76	GO:0008610: lipid biosynthetic process	3.17E-03
77	GO:0030091: protein repair	3.17E-03
78	GO:0009704: de-etiolation	3.17E-03
79	GO:0032508: DNA duplex unwinding	3.17E-03
80	GO:2000070: regulation of response to water deprivation	3.17E-03
81	GO:0017004: cytochrome complex assembly	3.63E-03
82	GO:0006002: fructose 6-phosphate metabolic process	3.63E-03
83	GO:0015996: chlorophyll catabolic process	3.63E-03
84	GO:0009827: plant-type cell wall modification	3.63E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	3.63E-03
86	GO:0009657: plastid organization	3.63E-03
87	GO:0032544: plastid translation	3.63E-03
88	GO:0010206: photosystem II repair	4.10E-03
89	GO:0034765: regulation of ion transmembrane transport	4.10E-03
90	GO:0090333: regulation of stomatal closure	4.10E-03
91	GO:0000373: Group II intron splicing	4.10E-03
92	GO:0071555: cell wall organization	4.32E-03
93	GO:0009658: chloroplast organization	4.93E-03
94	GO:0009926: auxin polar transport	5.03E-03
95	GO:0009640: photomorphogenesis	5.03E-03
96	GO:0019538: protein metabolic process	5.11E-03
97	GO:0006032: chitin catabolic process	5.11E-03
98	GO:0009688: abscisic acid biosynthetic process	5.11E-03
99	GO:0043069: negative regulation of programmed cell death	5.11E-03
100	GO:0048829: root cap development	5.11E-03
101	GO:0009644: response to high light intensity	5.44E-03
102	GO:0048765: root hair cell differentiation	5.65E-03
103	GO:0008285: negative regulation of cell proliferation	5.65E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	5.65E-03
105	GO:0009750: response to fructose	5.65E-03
106	GO:0006820: anion transport	6.20E-03
107	GO:0045037: protein import into chloroplast stroma	6.20E-03
108	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.77E-03
109	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
110	GO:0006094: gluconeogenesis	6.78E-03
111	GO:0009767: photosynthetic electron transport chain	6.78E-03
112	GO:0005986: sucrose biosynthetic process	6.78E-03
113	GO:0010628: positive regulation of gene expression	6.78E-03
114	GO:0010229: inflorescence development	6.78E-03
115	GO:0010540: basipetal auxin transport	7.37E-03
116	GO:0010143: cutin biosynthetic process	7.37E-03
117	GO:0010207: photosystem II assembly	7.37E-03
118	GO:0019253: reductive pentose-phosphate cycle	7.37E-03
119	GO:0010053: root epidermal cell differentiation	7.98E-03
120	GO:0009969: xyloglucan biosynthetic process	7.98E-03
121	GO:0009825: multidimensional cell growth	7.98E-03
122	GO:0010167: response to nitrate	7.98E-03
123	GO:0005985: sucrose metabolic process	7.98E-03
124	GO:0006833: water transport	8.61E-03
125	GO:0019762: glucosinolate catabolic process	8.61E-03
126	GO:0010025: wax biosynthetic process	8.61E-03
127	GO:0006636: unsaturated fatty acid biosynthetic process	8.61E-03
128	GO:0005975: carbohydrate metabolic process	8.94E-03
129	GO:0006487: protein N-linked glycosylation	9.26E-03
130	GO:0010073: meristem maintenance	9.92E-03
131	GO:0007017: microtubule-based process	9.92E-03
132	GO:0032259: methylation	1.01E-02
133	GO:0031408: oxylipin biosynthetic process	1.06E-02
134	GO:0003333: amino acid transmembrane transport	1.06E-02
135	GO:0030245: cellulose catabolic process	1.13E-02
136	GO:0010227: floral organ abscission	1.20E-02
137	GO:0019722: calcium-mediated signaling	1.27E-02
138	GO:0042127: regulation of cell proliferation	1.27E-02
139	GO:0042391: regulation of membrane potential	1.43E-02
140	GO:0034220: ion transmembrane transport	1.43E-02
141	GO:0010087: phloem or xylem histogenesis	1.43E-02
142	GO:0009958: positive gravitropism	1.50E-02
143	GO:0045489: pectin biosynthetic process	1.50E-02
144	GO:0048825: cotyledon development	1.66E-02
145	GO:0071554: cell wall organization or biogenesis	1.75E-02
146	GO:1901657: glycosyl compound metabolic process	1.91E-02
147	GO:0007267: cell-cell signaling	2.09E-02
148	GO:0016126: sterol biosynthetic process	2.27E-02
149	GO:0009911: positive regulation of flower development	2.27E-02
150	GO:0042128: nitrate assimilation	2.45E-02
151	GO:0015995: chlorophyll biosynthetic process	2.55E-02
152	GO:0010411: xyloglucan metabolic process	2.55E-02
153	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
154	GO:0000160: phosphorelay signal transduction system	2.84E-02
155	GO:0010311: lateral root formation	2.84E-02
156	GO:0009834: plant-type secondary cell wall biogenesis	2.94E-02
157	GO:0009407: toxin catabolic process	2.94E-02
158	GO:0010218: response to far red light	2.94E-02
159	GO:0010119: regulation of stomatal movement	3.04E-02
160	GO:0006865: amino acid transport	3.14E-02
161	GO:0080167: response to karrikin	3.22E-02
162	GO:0009637: response to blue light	3.24E-02
163	GO:0006839: mitochondrial transport	3.56E-02
164	GO:0006631: fatty acid metabolic process	3.67E-02
165	GO:0010114: response to red light	3.88E-02
166	GO:0042546: cell wall biogenesis	4.00E-02
167	GO:0008643: carbohydrate transport	4.11E-02
168	GO:0009636: response to toxic substance	4.22E-02
169	GO:0006855: drug transmembrane transport	4.33E-02
170	GO:0009408: response to heat	4.73E-02
171	GO:0009809: lignin biosynthetic process	4.80E-02
172	GO:0006364: rRNA processing	4.80E-02
173	GO:0006813: potassium ion transport	4.80E-02
174	GO:0009736: cytokinin-activated signaling pathway	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0010487: thermospermine synthase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
9	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.77E-04
10	GO:0000170: sphingosine hydroxylase activity	1.77E-04
11	GO:0090422: thiamine pyrophosphate transporter activity	1.77E-04
12	GO:0080132: fatty acid alpha-hydroxylase activity	1.77E-04
13	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.77E-04
14	GO:0009496: plastoquinol--plastocyanin reductase activity	1.77E-04
15	GO:0008568: microtubule-severing ATPase activity	1.77E-04
16	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.77E-04
17	GO:0016768: spermine synthase activity	1.77E-04
18	GO:0016168: chlorophyll binding	2.54E-04
19	GO:0047746: chlorophyllase activity	4.01E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	4.01E-04
21	GO:0003938: IMP dehydrogenase activity	4.01E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.01E-04
23	GO:0042284: sphingolipid delta-4 desaturase activity	4.01E-04
24	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.01E-04
25	GO:0031409: pigment binding	6.28E-04
26	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.28E-04
27	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.28E-04
28	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.28E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	6.55E-04
30	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	6.55E-04
31	GO:0015079: potassium ion transmembrane transporter activity	7.64E-04
32	GO:0001872: (1->3)-beta-D-glucan binding	9.34E-04
33	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9.34E-04
34	GO:0004659: prenyltransferase activity	1.24E-03
35	GO:0010011: auxin binding	1.24E-03
36	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.24E-03
37	GO:0010328: auxin influx transmembrane transporter activity	1.24E-03
38	GO:0052793: pectin acetylesterase activity	1.24E-03
39	GO:0004506: squalene monooxygenase activity	1.24E-03
40	GO:0042277: peptide binding	1.24E-03
41	GO:0015120: phosphoglycerate transmembrane transporter activity	1.24E-03
42	GO:0008381: mechanically-gated ion channel activity	1.57E-03
43	GO:0009922: fatty acid elongase activity	1.57E-03
44	GO:0004871: signal transducer activity	1.75E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.94E-03
46	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.04E-03
47	GO:0016413: O-acetyltransferase activity	2.25E-03
48	GO:0005242: inward rectifier potassium channel activity	2.32E-03
49	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.32E-03
50	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.32E-03
51	GO:0030247: polysaccharide binding	2.80E-03
52	GO:0004222: metalloendopeptidase activity	3.41E-03
53	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.63E-03
54	GO:0003824: catalytic activity	5.09E-03
55	GO:0030234: enzyme regulator activity	5.11E-03
56	GO:0004568: chitinase activity	5.11E-03
57	GO:0005215: transporter activity	5.15E-03
58	GO:0015386: potassium:proton antiporter activity	5.65E-03
59	GO:0015293: symporter activity	5.66E-03
60	GO:0008378: galactosyltransferase activity	6.20E-03
61	GO:0004089: carbonate dehydratase activity	6.78E-03
62	GO:0004565: beta-galactosidase activity	6.78E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	6.78E-03
64	GO:0016491: oxidoreductase activity	6.99E-03
65	GO:0008266: poly(U) RNA binding	7.37E-03
66	GO:0030599: pectinesterase activity	9.09E-03
67	GO:0004857: enzyme inhibitor activity	9.26E-03
68	GO:0043424: protein histidine kinase binding	9.92E-03
69	GO:0016746: transferase activity, transferring acyl groups	9.95E-03
70	GO:0004176: ATP-dependent peptidase activity	1.06E-02
71	GO:0022891: substrate-specific transmembrane transporter activity	1.20E-02
72	GO:0008810: cellulase activity	1.20E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.27E-02
74	GO:0005249: voltage-gated potassium channel activity	1.43E-02
75	GO:0030551: cyclic nucleotide binding	1.43E-02
76	GO:0030276: clathrin binding	1.50E-02
77	GO:0050662: coenzyme binding	1.58E-02
78	GO:0015297: antiporter activity	1.60E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.75E-02
80	GO:0000156: phosphorelay response regulator activity	1.91E-02
81	GO:0016759: cellulose synthase activity	2.00E-02
82	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.09E-02
83	GO:0008237: metallopeptidase activity	2.09E-02
84	GO:0005200: structural constituent of cytoskeleton	2.09E-02
85	GO:0016597: amino acid binding	2.18E-02
86	GO:0015250: water channel activity	2.27E-02
87	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
88	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.45E-02
89	GO:0008168: methyltransferase activity	2.50E-02
90	GO:0004683: calmodulin-dependent protein kinase activity	2.55E-02
91	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.55E-02
92	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
93	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.64E-02
94	GO:0004672: protein kinase activity	2.76E-02
95	GO:0015238: drug transmembrane transporter activity	2.84E-02
96	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.94E-02
97	GO:0030246: carbohydrate binding	3.19E-02
98	GO:0003993: acid phosphatase activity	3.35E-02
99	GO:0008422: beta-glucosidase activity	3.45E-02
100	GO:0052689: carboxylic ester hydrolase activity	3.56E-02
101	GO:0051539: 4 iron, 4 sulfur cluster binding	3.56E-02
102	GO:0004364: glutathione transferase activity	3.78E-02
103	GO:0051537: 2 iron, 2 sulfur cluster binding	4.11E-02
104	GO:0051287: NAD binding	4.45E-02
105	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	2.05E-11
3	GO:0009941: chloroplast envelope	1.94E-10
4	GO:0009535: chloroplast thylakoid membrane	8.01E-10
5	GO:0009534: chloroplast thylakoid	8.83E-08
6	GO:0016021: integral component of membrane	6.13E-07
7	GO:0009579: thylakoid	9.95E-06
8	GO:0009570: chloroplast stroma	2.26E-05
9	GO:0048046: apoplast	1.60E-04
10	GO:0009782: photosystem I antenna complex	1.77E-04
11	GO:0010319: stromule	2.01E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.09E-04
13	GO:0005886: plasma membrane	5.59E-04
14	GO:0030076: light-harvesting complex	5.64E-04
15	GO:0009528: plastid inner membrane	6.55E-04
16	GO:0015630: microtubule cytoskeleton	9.34E-04
17	GO:0009527: plastid outer membrane	1.24E-03
18	GO:0031969: chloroplast membrane	1.24E-03
19	GO:0009523: photosystem II	1.55E-03
20	GO:0009512: cytochrome b6f complex	1.57E-03
21	GO:0010287: plastoglobule	1.76E-03
22	GO:0016020: membrane	2.15E-03
23	GO:0009986: cell surface	2.74E-03
24	GO:0009533: chloroplast stromal thylakoid	2.74E-03
25	GO:0046658: anchored component of plasma membrane	4.05E-03
26	GO:0031977: thylakoid lumen	4.64E-03
27	GO:0032040: small-subunit processome	6.20E-03
28	GO:0009506: plasmodesma	6.26E-03
29	GO:0030095: chloroplast photosystem II	7.37E-03
30	GO:0005875: microtubule associated complex	8.61E-03
31	GO:0005789: endoplasmic reticulum membrane	9.05E-03
32	GO:0009706: chloroplast inner membrane	9.66E-03
33	GO:0009532: plastid stroma	1.06E-02
34	GO:0030136: clathrin-coated vesicle	1.35E-02
35	GO:0005794: Golgi apparatus	1.40E-02
36	GO:0005770: late endosome	1.50E-02
37	GO:0009522: photosystem I	1.58E-02
38	GO:0005618: cell wall	1.70E-02
39	GO:0030529: intracellular ribonucleoprotein complex	2.27E-02
40	GO:0009707: chloroplast outer membrane	2.74E-02
41	GO:0005874: microtubule	3.11E-02